Wall clock time and date at job start Mon Mar 30 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86791 * 120.00198 * 2 1 4 4 H 1.48506 * 109.47235 * 86.69837 * 3 2 1 5 5 H 1.48502 * 109.47478 * 206.69911 * 3 2 1 6 6 H 1.48503 * 109.47171 * 326.69718 * 3 2 1 7 7 C 1.39950 * 119.99836 * 180.27020 * 2 1 3 8 8 H 1.08004 * 119.99577 * 15.07095 * 7 2 1 9 9 C 1.41398 * 120.00080 * 195.06689 * 7 2 1 10 10 C 1.40737 * 120.24090 * 33.30990 * 9 7 2 11 11 C 1.37591 * 119.74087 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.25521 * 0.02846 * 11 10 9 13 13 C 1.38616 * 120.49567 * 359.94649 * 12 11 10 14 14 C 1.37641 * 120.24855 * 359.76865 * 13 12 11 15 15 C 1.50703 * 120.12851 * 180.27681 * 14 13 12 16 16 N 1.46900 * 109.47186 * 105.86240 * 15 14 13 17 17 C 1.46853 * 110.99557 * 300.74801 * 16 15 14 18 18 C 1.53037 * 109.51821 * 174.16175 * 17 16 15 19 19 C 1.53123 * 109.28205 * 59.18169 * 18 17 16 20 20 C 1.53121 * 109.15718 * 302.34691 * 19 18 17 21 21 C 1.46845 * 110.99867 * 176.54413 * 16 15 14 22 22 H 1.08994 * 109.46840 * 65.83124 * 21 16 15 23 23 C 1.53003 * 109.46277 * 305.84995 * 21 16 15 24 24 O 1.42895 * 109.47173 * 294.35566 * 23 21 16 25 25 H 0.96998 * 119.99996 * 359.72813 * 1 2 3 26 26 H 1.08003 * 120.12843 * 359.97438 * 10 9 7 27 27 H 1.08008 * 119.87245 * 179.97438 * 11 10 9 28 28 H 1.07993 * 119.75400 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.87619 * 180.02562 * 13 12 11 30 30 H 1.08999 * 109.47129 * 225.86585 * 15 14 13 31 31 H 1.08998 * 109.46992 * 345.85985 * 15 14 13 32 32 H 1.08997 * 109.46454 * 294.17820 * 17 16 15 33 33 H 1.08994 * 109.46039 * 54.14909 * 17 16 15 34 34 H 1.09008 * 109.50645 * 299.23955 * 18 17 16 35 35 H 1.09006 * 109.53405 * 179.14280 * 18 17 16 36 36 H 1.08994 * 109.52494 * 182.44202 * 19 18 17 37 37 H 1.09000 * 109.52081 * 62.24754 * 19 18 17 38 38 H 1.09002 * 109.50258 * 297.70958 * 20 19 18 39 39 H 1.09001 * 109.50156 * 177.59404 * 20 19 18 40 40 H 1.09003 * 109.46672 * 54.35143 * 23 21 16 41 41 H 1.08998 * 109.47561 * 174.35146 * 23 21 16 42 42 H 0.96700 * 114.00338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4199 2.0867 1.3978 5 1 3.5730 1.4210 -0.6291 6 1 1.4764 2.6314 -0.7687 7 6 2.0079 -1.2120 -0.0057 8 1 1.4957 -2.1301 -0.2533 9 6 3.3855 -1.2346 0.3125 10 6 3.9106 -0.3290 1.2532 11 6 5.2525 -0.3604 1.5555 12 6 6.0867 -1.2792 0.9369 13 6 5.5802 -2.1761 0.0093 14 6 4.2400 -2.1667 -0.3042 15 6 3.6912 -3.1472 -1.3085 16 7 2.9314 -4.1915 -0.6085 17 6 3.7814 -4.9057 0.3528 18 6 2.9269 -5.8827 1.1636 19 6 2.2543 -6.8761 0.2121 20 6 1.4139 -6.1039 -0.8086 21 6 2.3122 -5.1205 -1.5623 22 1 3.0905 -5.6713 -2.0904 23 6 1.4725 -4.3324 -2.5697 24 8 0.3741 -3.7157 -1.8951 25 1 -0.4850 0.8400 0.0040 26 1 3.2627 0.3878 1.7358 27 1 5.6579 0.3338 2.2768 28 1 7.1388 -1.2965 1.1800 29 1 6.2389 -2.8878 -0.4662 30 1 3.0348 -2.6251 -2.0046 31 1 4.5144 -3.6034 -1.8581 32 1 4.5529 -5.4573 -0.1844 33 1 4.2503 -4.1882 1.0260 34 1 2.1638 -5.3303 1.7120 35 1 3.5601 -6.4239 1.8667 36 1 1.6106 -7.5468 0.7812 37 1 3.0170 -7.4558 -0.3079 38 1 0.6270 -5.5550 -0.2914 39 1 0.9666 -6.8032 -1.5151 40 1 2.0902 -3.5645 -3.0355 41 1 1.0946 -5.0091 -3.3361 42 1 -0.2021 -3.1978 -2.4737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:55 Heat of formation + Delta-G solvation = -30.778820 kcal Electronic energy + Delta-G solvation = -22610.230274 eV Core-core repulsion = 19554.421835 eV Total energy + Delta-G solvation = -3055.808438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.20887 -37.54130 -35.69513 -33.41203 -33.37276 -31.06016 -30.27031 -29.73010 -26.19975 -25.43351 -24.56830 -22.37261 -21.26299 -20.87571 -19.47226 -19.05266 -17.15015 -16.74611 -15.70904 -15.55016 -14.88775 -14.52704 -14.14459 -13.92468 -13.56144 -13.46981 -13.21688 -12.74420 -12.59680 -12.55594 -12.40339 -11.87124 -11.64795 -11.46745 -11.12249 -10.99463 -10.77261 -10.70174 -10.47671 -10.37533 -10.17120 -9.94819 -9.76935 -9.58114 -9.38070 -9.17214 -9.00156 -7.59298 -7.45235 -7.32516 -6.71971 -4.25075 2.65130 2.78184 3.21610 3.29198 3.41718 4.11552 4.44954 4.71749 4.81227 5.14043 5.20243 5.29664 5.54799 5.61461 5.69753 5.71236 5.80041 5.88703 5.94847 5.99502 6.07351 6.12015 6.16612 6.24846 6.26993 6.28599 6.37852 6.49174 6.63044 6.65805 6.80260 6.80981 6.86748 7.07957 7.34021 7.52851 7.67113 7.81127 7.89735 7.92611 8.13819 8.28682 8.29541 8.75720 8.89119 9.12492 10.28254 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.008163 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.349227 B = 3429.204077 C = 4484.173652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.084 3.916 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.248 1.248 6 H -0.295 1.295 7 C -0.430 4.430 8 H 0.129 0.871 9 C 0.109 3.891 10 C -0.239 4.239 11 C -0.081 4.081 12 C -0.251 4.251 13 C -0.078 4.078 14 C -0.179 4.179 15 C 0.122 3.878 16 N -0.503 5.503 17 C 0.061 3.939 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.105 4.105 21 C 0.088 3.912 22 H 0.037 0.963 23 C 0.081 3.919 24 O -0.539 6.539 25 H 0.279 0.721 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.010 0.990 32 H 0.016 0.984 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.033 0.967 42 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 -8.342 -3.816 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.171 1.171 6 H -0.223 1.223 7 C -0.458 4.458 8 H 0.146 0.854 9 C 0.105 3.895 10 C -0.258 4.258 11 C -0.099 4.099 12 C -0.270 4.270 13 C -0.097 4.097 14 C -0.181 4.181 15 C -0.005 4.005 16 N -0.228 5.228 17 C -0.067 4.067 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.020 4.020 22 H 0.054 0.946 23 C 0.003 3.997 24 O -0.342 6.342 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.385 -8.331 -3.070 9.194 hybrid contribution 0.855 0.798 -0.853 1.448 sum 3.240 -7.533 -3.923 9.090 Atomic orbital electron populations 1.69719 1.07829 1.29388 1.36290 1.26165 0.94630 1.01109 0.91503 0.86527 0.81206 0.80837 0.78780 1.20041 1.17137 1.22291 1.20013 0.91719 0.96831 1.37253 0.85357 1.17558 0.93285 0.89609 0.89030 1.21106 0.95002 1.05571 1.04161 1.20584 0.93988 0.97259 0.98092 1.20276 0.97689 1.03123 1.05948 1.20495 0.94552 0.97469 0.97172 1.19500 0.92360 1.02875 1.03324 1.20722 0.94072 0.91010 0.94649 1.61843 1.33181 1.11545 1.16242 1.22017 0.93465 0.95812 0.95436 1.21577 0.99605 0.96628 0.97579 1.21579 0.98808 0.97599 0.97632 1.21484 0.98628 0.96507 0.97658 1.21627 0.95015 0.92670 0.92711 0.94580 1.22196 0.89151 0.95181 0.93186 1.86694 1.39976 1.69496 1.38009 0.91074 0.88452 0.89353 0.89366 0.89530 0.89981 0.97182 0.96611 0.89839 0.90827 0.92497 0.92432 0.93117 0.89731 0.92763 0.93519 0.94869 0.78436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.43 13.93 55.55 0.77 -20.66 16 2 C 0.08 2.19 5.43 -17.34 -0.09 2.09 16 3 Si 0.90 21.14 24.54 -169.99 -4.17 16.97 16 4 H -0.27 -6.38 6.70 56.52 0.38 -6.00 16 5 H -0.25 -6.02 6.89 56.52 0.39 -5.63 16 6 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.43 -11.38 8.62 -37.74 -0.33 -11.71 16 8 H 0.13 3.58 6.26 -52.48 -0.33 3.26 16 9 C 0.11 2.74 5.04 -106.82 -0.54 2.20 16 10 C -0.24 -5.91 7.15 -38.87 -0.28 -6.19 16 11 C -0.08 -1.81 10.02 -39.66 -0.40 -2.21 16 12 C -0.25 -5.35 10.05 -39.29 -0.39 -5.74 16 13 C -0.08 -1.65 8.97 -39.66 -0.36 -2.01 16 14 C -0.18 -4.05 4.16 -103.91 -0.43 -4.48 16 15 C 0.12 2.44 3.96 -4.97 -0.02 2.42 16 16 N -0.50 -9.55 3.77 -228.13 -0.86 -10.41 16 17 C 0.06 1.07 5.22 -3.83 -0.02 1.05 16 18 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 19 C -0.12 -1.63 6.00 -26.61 -0.16 -1.79 16 20 C -0.10 -1.58 5.18 -26.65 -0.14 -1.72 16 21 C 0.09 1.43 2.24 -67.72 -0.15 1.28 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 C 0.08 1.26 6.33 37.16 0.24 1.50 16 24 O -0.54 -9.68 11.96 -35.23 -0.42 -10.10 16 25 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 26 H 0.10 2.43 4.95 -52.48 -0.26 2.17 16 27 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.09 1.63 7.99 -52.49 -0.42 1.21 16 30 H 0.08 1.73 5.47 -51.93 -0.28 1.44 16 31 H 0.01 0.19 7.94 -51.93 -0.41 -0.23 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 1.66 6.39 -51.93 -0.33 1.33 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.50 7.52 -51.93 -0.39 1.11 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.74 5.93 -51.93 -0.31 0.44 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.37 5.42 9.12 45.56 0.42 5.84 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -28.19 320.45 -8.80 -36.99 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.72 Total: 9.66 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -3.23 Total: -27.28 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.09 Total: -31.07 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.42 Total: -10.10 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.17 Total: 16.97 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.19 -8.80 -36.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.209 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds