Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47205 * 300.00542 * 3 2 1 6 6 H 1.48496 * 109.46957 * 60.00252 * 3 2 1 7 7 C 1.39950 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99367 * 191.92975 * 7 2 1 9 9 C 1.41389 * 120.00342 * 11.93394 * 7 2 1 10 10 C 1.40734 * 120.24381 * 28.19215 * 9 7 2 11 11 C 1.37601 * 119.74460 * 179.72208 * 10 9 7 12 12 C 1.38654 * 120.24875 * 0.26148 * 11 10 9 13 13 C 1.38618 * 120.50088 * 359.97438 * 12 11 10 14 14 C 1.37638 * 120.24669 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.12541 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.46764 * 259.99830 * 15 14 13 17 17 C 1.46849 * 111.00166 * 67.28888 * 16 15 14 18 18 C 1.53032 * 109.52839 * 185.83669 * 17 16 15 19 19 C 1.53123 * 109.27826 * 300.82235 * 18 17 16 20 20 C 1.53120 * 109.15828 * 57.64975 * 19 18 17 21 21 C 1.46851 * 111.00173 * 191.49589 * 16 15 14 22 22 H 1.08997 * 109.46061 * 294.18360 * 21 16 15 23 23 C 1.52999 * 109.45673 * 54.14700 * 21 16 15 24 24 O 1.42892 * 109.47323 * 64.41683 * 23 21 16 25 25 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12924 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.87655 * 180.23126 * 11 10 9 28 28 H 1.08003 * 119.75084 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.87376 * 179.97438 * 13 12 11 30 30 H 1.09000 * 109.47394 * 19.99592 * 15 14 13 31 31 H 1.09002 * 109.46966 * 140.00332 * 15 14 13 32 32 H 1.08999 * 109.46181 * 305.85492 * 17 16 15 33 33 H 1.09003 * 109.45920 * 65.81791 * 17 16 15 34 34 H 1.09007 * 109.50024 * 60.76028 * 18 17 16 35 35 H 1.08996 * 109.50499 * 180.83996 * 18 17 16 36 36 H 1.08998 * 109.52497 * 177.55555 * 19 18 17 37 37 H 1.08994 * 109.52330 * 297.68335 * 19 18 17 38 38 H 1.09003 * 109.50323 * 62.29076 * 20 19 18 39 39 H 1.09003 * 109.50273 * 182.40393 * 20 19 18 40 40 H 1.08998 * 109.46956 * 184.41974 * 23 21 16 41 41 H 1.09006 * 109.47034 * 304.41220 * 23 21 16 42 42 H 0.96707 * 114.00173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8835 2.3963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0705 -1.2221 0.1928 9 6 1.3240 -2.4232 -0.2543 10 6 0.1659 -2.4291 -1.0540 11 6 -0.4884 -3.6146 -1.2990 12 6 -0.0140 -4.7993 -0.7569 13 6 1.1229 -4.8045 0.0362 14 6 1.7940 -3.6308 0.2937 15 6 3.0300 -3.6397 1.1559 16 7 2.6816 -3.2066 2.5157 17 6 1.8183 -4.1933 3.1773 18 6 1.3583 -3.6452 4.5300 19 6 2.5840 -3.3480 5.3983 20 6 3.4902 -2.3550 4.6654 21 6 3.8885 -2.9406 3.3088 22 1 4.4353 -3.8711 3.4613 23 6 4.7780 -1.9430 2.5642 24 8 4.0999 -0.6901 2.4540 25 1 -0.4850 0.8400 0.0004 26 1 -0.2050 -1.5076 -1.4778 27 1 -1.3751 -3.6221 -1.9154 28 1 -0.5341 -5.7250 -0.9541 29 1 1.4833 -5.7331 0.4537 30 1 3.4419 -4.6483 1.1902 31 1 3.7706 -2.9588 0.7363 32 1 0.9485 -4.3926 2.5513 33 1 2.3749 -5.1180 3.3304 34 1 0.7899 -2.7278 4.3766 35 1 0.7297 -4.3838 5.0273 36 1 2.2628 -2.9167 6.3464 37 1 3.1307 -4.2721 5.5852 38 1 2.9554 -1.4173 4.5141 39 1 4.3854 -2.1721 5.2598 40 1 5.7089 -1.8052 3.1143 41 1 4.9982 -2.3259 1.5677 42 1 4.6064 -0.0080 1.9920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = -29.471818 kcal Electronic energy + Delta-G solvation = -22720.547594 eV Core-core repulsion = 19664.795831 eV Total energy + Delta-G solvation = -3055.751762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.11701 -37.27725 -35.74009 -33.44254 -33.26299 -31.02528 -29.82300 -29.17767 -26.12592 -25.38575 -24.67960 -22.34211 -20.98793 -20.69971 -19.36938 -19.06228 -16.99617 -16.79273 -15.68520 -15.33789 -14.79294 -14.40531 -14.08106 -13.92153 -13.56039 -13.28194 -12.99254 -12.71718 -12.56896 -12.45881 -12.30763 -11.46524 -11.41440 -11.16076 -11.01619 -10.98533 -10.88962 -10.68653 -10.53974 -10.32655 -10.26471 -9.91064 -9.75494 -9.42506 -9.29176 -9.02731 -8.99904 -7.42663 -7.20111 -7.14752 -6.51105 -4.09717 2.90557 3.07532 3.17852 3.21160 3.36988 4.10923 4.55658 4.78380 4.88940 5.15351 5.22177 5.31784 5.56591 5.68105 5.70725 5.80963 5.88103 5.94907 5.98390 6.06726 6.15677 6.18888 6.28851 6.30408 6.35451 6.42801 6.57458 6.60279 6.65933 6.73696 6.86877 6.94499 7.29664 7.41132 7.54127 7.78217 7.84767 7.94511 8.09101 8.20704 8.22522 8.26871 8.49494 8.84112 9.12266 9.17159 10.43886 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.009834 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.241545 B = 2846.450921 C = 4224.962110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.418 4.418 8 H 0.080 0.920 9 C 0.128 3.872 10 C -0.163 4.163 11 C -0.108 4.108 12 C -0.248 4.248 13 C -0.090 4.090 14 C -0.190 4.190 15 C 0.124 3.876 16 N -0.497 5.497 17 C 0.061 3.939 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.105 4.105 21 C 0.088 3.912 22 H 0.035 0.965 23 C 0.082 3.918 24 O -0.536 6.536 25 H 0.274 0.726 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.007 0.993 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.047 0.953 42 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -2.593 6.239 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.448 4.448 8 H 0.098 0.902 9 C 0.125 3.875 10 C -0.183 4.183 11 C -0.126 4.126 12 C -0.268 4.268 13 C -0.109 4.109 14 C -0.192 4.192 15 C -0.003 4.003 16 N -0.222 5.222 17 C -0.067 4.067 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.020 4.020 22 H 0.053 0.947 23 C 0.004 3.996 24 O -0.339 6.339 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.346 -2.315 6.558 9.415 hybrid contribution 1.090 0.202 -0.138 1.117 sum 7.436 -2.113 6.420 10.049 Atomic orbital electron populations 1.69832 1.07481 1.28349 1.37355 1.25804 0.94561 1.00937 0.92495 0.86246 0.80667 0.81606 0.77750 1.18760 1.20854 1.20296 1.19456 0.96146 0.89818 1.39397 0.90236 1.17401 0.90811 0.91697 0.87548 1.21373 0.99089 0.96328 1.01479 1.20664 0.98423 0.93647 0.99899 1.20256 1.01110 0.96348 1.09066 1.20346 0.95951 0.95660 0.98902 1.19395 1.00824 0.93944 1.05017 1.20719 0.96390 0.95602 0.87538 1.61805 1.15024 1.44254 1.01110 1.22014 0.97891 0.91686 0.95095 1.21564 0.97156 1.01598 0.95008 1.21570 0.97036 0.98752 0.98211 1.21480 0.98806 1.00080 0.93874 1.21610 0.91329 0.95217 0.93882 0.94740 1.22219 0.92968 0.85943 0.98481 1.86747 1.45856 1.20993 1.80282 0.91544 0.86487 0.89921 0.90062 0.90236 0.97517 0.90579 0.89886 0.96802 0.90849 0.92558 0.92516 0.93131 0.89832 0.92865 0.94874 0.93487 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.26 10.87 55.55 0.60 -20.65 16 2 C 0.08 1.96 5.24 -17.34 -0.09 1.87 16 3 Si 0.91 19.10 29.58 -169.99 -5.03 14.07 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.42 -10.71 8.44 -37.74 -0.32 -11.02 16 8 H 0.08 1.96 5.75 -52.49 -0.30 1.66 16 9 C 0.13 3.36 5.55 -106.83 -0.59 2.77 16 10 C -0.16 -4.31 8.66 -38.87 -0.34 -4.64 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 12 C -0.25 -5.74 10.05 -39.29 -0.39 -6.13 16 13 C -0.09 -2.04 8.57 -39.66 -0.34 -2.38 16 14 C -0.19 -4.50 4.69 -103.91 -0.49 -4.99 16 15 C 0.12 2.54 4.28 -4.97 -0.02 2.52 16 16 N -0.50 -9.72 4.41 -228.13 -1.01 -10.73 16 17 C 0.06 1.12 5.27 -3.84 -0.02 1.10 16 18 C -0.12 -1.87 6.09 -26.65 -0.16 -2.04 16 19 C -0.12 -1.67 6.00 -26.61 -0.16 -1.83 16 20 C -0.10 -1.60 5.19 -26.66 -0.14 -1.74 16 21 C 0.09 1.45 2.23 -67.73 -0.15 1.30 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 23 C 0.08 1.27 6.31 37.16 0.23 1.50 16 24 O -0.54 -9.39 11.98 -35.23 -0.42 -9.82 16 25 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 27 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.08 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.08 1.63 8.03 -52.49 -0.42 1.21 16 30 H 0.01 0.13 7.97 -51.93 -0.41 -0.28 16 31 H 0.08 1.57 4.09 -51.93 -0.21 1.36 16 32 H 0.08 1.73 6.36 -51.93 -0.33 1.40 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.50 7.55 -51.93 -0.39 1.10 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.74 5.83 -51.93 -0.30 0.44 16 42 H 0.36 5.18 9.12 45.56 0.42 5.60 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -28.30 325.23 -9.98 -38.28 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.65 Total: 10.67 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -3.38 Total: -26.72 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.40 Total: -31.38 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.42 Total: -9.82 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.30 -9.98 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.808 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds