Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47205 * 300.00542 * 3 2 1 6 6 H 1.48496 * 109.46957 * 60.00252 * 3 2 1 7 7 C 1.39950 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99367 * 191.92975 * 7 2 1 9 9 C 1.41389 * 120.00342 * 11.93394 * 7 2 1 10 10 C 1.40734 * 120.24381 * 28.19215 * 9 7 2 11 11 C 1.37601 * 119.74460 * 179.72208 * 10 9 7 12 12 C 1.38654 * 120.24875 * 0.26148 * 11 10 9 13 13 C 1.38618 * 120.50088 * 359.97438 * 12 11 10 14 14 C 1.37638 * 120.24669 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.12541 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.46764 * 259.99830 * 15 14 13 17 17 C 1.46849 * 111.00166 * 67.28888 * 16 15 14 18 18 C 1.53032 * 109.52839 * 185.83669 * 17 16 15 19 19 C 1.53123 * 109.27826 * 300.82235 * 18 17 16 20 20 C 1.53120 * 109.15828 * 57.64975 * 19 18 17 21 21 C 1.46851 * 111.00173 * 191.49589 * 16 15 14 22 22 H 1.08997 * 109.46061 * 294.18360 * 21 16 15 23 23 C 1.52999 * 109.45673 * 54.14700 * 21 16 15 24 24 O 1.42892 * 109.47323 * 64.41683 * 23 21 16 25 25 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12924 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.87655 * 180.23126 * 11 10 9 28 28 H 1.08003 * 119.75084 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.87376 * 179.97438 * 13 12 11 30 30 H 1.09000 * 109.47394 * 19.99592 * 15 14 13 31 31 H 1.09002 * 109.46966 * 140.00332 * 15 14 13 32 32 H 1.08999 * 109.46181 * 305.85492 * 17 16 15 33 33 H 1.09003 * 109.45920 * 65.81791 * 17 16 15 34 34 H 1.09007 * 109.50024 * 60.76028 * 18 17 16 35 35 H 1.08996 * 109.50499 * 180.83996 * 18 17 16 36 36 H 1.08998 * 109.52497 * 177.55555 * 19 18 17 37 37 H 1.08994 * 109.52330 * 297.68335 * 19 18 17 38 38 H 1.09003 * 109.50323 * 62.29076 * 20 19 18 39 39 H 1.09003 * 109.50273 * 182.40393 * 20 19 18 40 40 H 1.08998 * 109.46956 * 184.41974 * 23 21 16 41 41 H 1.09006 * 109.47034 * 304.41220 * 23 21 16 42 42 H 0.96707 * 114.00173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8835 2.3963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0705 -1.2221 0.1928 9 6 1.3240 -2.4232 -0.2543 10 6 0.1659 -2.4291 -1.0540 11 6 -0.4884 -3.6146 -1.2990 12 6 -0.0140 -4.7993 -0.7569 13 6 1.1229 -4.8045 0.0362 14 6 1.7940 -3.6308 0.2937 15 6 3.0300 -3.6397 1.1559 16 7 2.6816 -3.2066 2.5157 17 6 1.8183 -4.1933 3.1773 18 6 1.3583 -3.6452 4.5300 19 6 2.5840 -3.3480 5.3983 20 6 3.4902 -2.3550 4.6654 21 6 3.8885 -2.9406 3.3088 22 1 4.4353 -3.8711 3.4613 23 6 4.7780 -1.9430 2.5642 24 8 4.0999 -0.6901 2.4540 25 1 -0.4850 0.8400 0.0004 26 1 -0.2050 -1.5076 -1.4778 27 1 -1.3751 -3.6221 -1.9154 28 1 -0.5341 -5.7250 -0.9541 29 1 1.4833 -5.7331 0.4537 30 1 3.4419 -4.6483 1.1902 31 1 3.7706 -2.9588 0.7363 32 1 0.9485 -4.3926 2.5513 33 1 2.3749 -5.1180 3.3304 34 1 0.7899 -2.7278 4.3766 35 1 0.7297 -4.3838 5.0273 36 1 2.2628 -2.9167 6.3464 37 1 3.1307 -4.2721 5.5852 38 1 2.9554 -1.4173 4.5141 39 1 4.3854 -2.1721 5.2598 40 1 5.7089 -1.8052 3.1143 41 1 4.9982 -2.3259 1.5677 42 1 4.6064 -0.0080 1.9920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = -47.108089 kcal Electronic energy + Delta-G solvation = -22721.312360 eV Core-core repulsion = 19664.795831 eV Total energy + Delta-G solvation = -3056.516529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54502 -39.02255 -37.02655 -35.31078 -34.73755 -32.35697 -31.56753 -31.00347 -27.62522 -26.94874 -26.33330 -23.79873 -22.71193 -22.16545 -21.08360 -20.40763 -18.87896 -18.07762 -17.29181 -16.78745 -16.41532 -16.08808 -15.61076 -15.35959 -15.03300 -14.80672 -14.52370 -14.26457 -14.02434 -13.90611 -13.69741 -13.19669 -13.12495 -12.73236 -12.66715 -12.57344 -12.39332 -12.28120 -12.03905 -11.97772 -11.58162 -11.30503 -11.23632 -11.00029 -10.91666 -10.87088 -10.47353 -9.14644 -9.07706 -8.77935 -8.39563 -6.05111 1.08219 1.20006 1.44817 1.58229 1.61757 2.34671 2.94983 3.19580 3.61989 3.91903 3.95601 4.04398 4.08333 4.28543 4.41100 4.46278 4.52638 4.55977 4.57912 4.60441 4.71820 4.74822 4.83406 4.89483 4.99800 5.01160 5.10491 5.15385 5.20098 5.34040 5.36692 5.41203 5.49282 5.62113 5.65953 5.89942 6.11977 6.27345 6.31426 6.49130 6.58821 6.61501 6.91244 7.10263 7.20154 7.24975 8.57304 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.009834 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.241545 B = 2846.450921 C = 4224.962110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.238 1.238 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.431 4.431 8 H 0.085 0.915 9 C 0.098 3.902 10 C -0.195 4.195 11 C -0.117 4.117 12 C -0.249 4.249 13 C -0.095 4.095 14 C -0.191 4.191 15 C 0.131 3.869 16 N -0.521 5.521 17 C 0.062 3.938 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.100 4.100 21 C 0.083 3.917 22 H 0.054 0.946 23 C 0.081 3.919 24 O -0.563 6.563 25 H 0.275 0.725 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -3.613 7.761 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.160 1.160 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.095 3.905 10 C -0.215 4.215 11 C -0.136 4.136 12 C -0.269 4.269 13 C -0.113 4.113 14 C -0.193 4.193 15 C 0.004 3.996 16 N -0.246 5.246 17 C -0.066 4.066 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.138 4.138 21 C -0.025 4.025 22 H 0.072 0.928 23 C 0.003 3.997 24 O -0.368 6.368 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.465 -3.350 8.077 12.171 hybrid contribution 0.393 0.398 -0.604 0.823 sum 8.859 -2.952 7.473 11.959 Atomic orbital electron populations 1.69936 1.09118 1.29165 1.38922 1.26634 0.95199 1.04267 0.91791 0.85267 0.80810 0.77001 0.77156 1.16040 1.20911 1.20789 1.19607 0.96322 0.90222 1.39933 0.89752 1.17782 0.91320 0.93184 0.88238 1.21354 1.00536 0.96391 1.03191 1.20902 0.98909 0.93562 1.00211 1.20617 1.01197 0.96864 1.08188 1.20670 0.95710 0.96476 0.98475 1.19815 1.01623 0.93393 1.04443 1.20590 0.94677 0.96324 0.87966 1.61694 1.16960 1.44843 1.01085 1.21966 0.96802 0.92451 0.95331 1.21535 0.98292 1.00482 0.94739 1.21544 0.95809 0.99483 0.98070 1.21440 0.99760 0.98721 0.93870 1.21789 0.90379 0.96326 0.94019 0.92848 1.22325 0.93833 0.84983 0.98596 1.86713 1.47298 1.22109 1.80638 0.91445 0.88643 0.88307 0.87356 0.87597 0.96065 0.90957 0.93136 0.95005 0.94144 0.90582 0.90946 0.91033 0.93109 0.90137 0.91456 0.94141 0.77760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.60 10.87 21.83 0.24 -46.36 16 2 C 0.03 1.69 5.24 85.26 0.45 2.14 16 3 Si 0.97 39.66 29.58 68.60 2.03 41.68 16 4 H -0.24 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.43 -22.55 8.44 23.46 0.20 -22.35 16 8 H 0.08 4.20 5.75 -2.91 -0.02 4.18 16 9 C 0.10 5.24 5.55 -21.29 -0.12 5.13 16 10 C -0.19 -10.70 8.66 22.73 0.20 -10.51 16 11 C -0.12 -5.77 10.02 22.22 0.22 -5.55 16 12 C -0.25 -11.30 10.05 22.46 0.23 -11.08 16 13 C -0.09 -4.21 8.57 22.22 0.19 -4.02 16 14 C -0.19 -9.05 4.69 -19.40 -0.09 -9.14 16 15 C 0.13 5.25 4.28 85.56 0.37 5.61 16 16 N -0.52 -19.79 4.41 -875.65 -3.86 -23.65 16 17 C 0.06 2.22 5.27 86.32 0.45 2.67 16 18 C -0.11 -3.51 6.09 30.65 0.19 -3.32 16 19 C -0.11 -2.82 6.00 30.68 0.18 -2.64 16 20 C -0.10 -2.81 5.19 30.64 0.16 -2.65 16 21 C 0.08 2.52 2.23 44.93 0.10 2.62 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 C 0.08 2.29 6.31 71.98 0.45 2.75 16 24 O -0.56 -18.99 11.98 -148.98 -1.79 -20.77 16 25 H 0.28 14.13 8.30 -92.71 -0.77 13.37 16 26 H 0.10 5.55 6.22 -2.91 -0.02 5.53 16 27 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.11 4.10 8.03 -2.91 -0.02 4.07 16 30 H 0.02 0.78 7.97 -2.39 -0.02 0.76 16 31 H 0.07 2.94 4.09 -2.39 -0.01 2.93 16 32 H 0.05 2.09 6.36 -2.39 -0.02 2.08 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.77 7.55 -2.39 -0.02 1.75 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.20 5.83 -2.38 -0.01 1.18 16 42 H 0.38 10.09 9.12 -74.05 -0.68 9.41 16 Total: -1.00 -62.92 325.23 0.13 -62.79 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.34 Total: 36.66 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 3.18 Total: -50.35 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -3.63 Total: -70.01 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.79 Total: -20.77 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Total: -62.92 0.13 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.682 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds