Wall clock time and date at job start Mon Mar 30 2020 01:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00324 * 2 1 4 4 H 1.48498 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47083 * 300.00442 * 3 2 1 6 6 H 1.48496 * 109.46732 * 59.99878 * 3 2 1 7 7 C 1.39950 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99785 * 166.46521 * 7 2 1 9 9 C 1.41395 * 119.99927 * 346.45870 * 7 2 1 10 10 C 1.40728 * 120.24864 * 332.52637 * 9 7 2 11 11 C 1.37591 * 119.74683 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.25062 * 359.97438 * 11 10 9 13 13 C 1.38623 * 120.50075 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.24394 * 0.25514 * 13 12 11 15 15 C 1.50700 * 120.12590 * 179.74765 * 14 13 12 16 16 N 1.46897 * 109.47338 * 254.92757 * 15 14 13 17 17 C 1.47639 * 110.99983 * 204.89942 * 16 15 14 18 18 C 1.50816 * 108.04895 * 150.34305 * 17 16 15 19 19 C 1.53829 * 111.61895 * 95.06101 * 18 17 16 20 20 C 1.54170 * 111.96749 * 319.03673 * 19 18 17 21 21 C 1.50750 * 112.61240 * 318.49026 * 20 19 18 22 22 H 1.08999 * 109.54680 * 333.15264 * 21 20 19 23 23 O 1.42897 * 109.54437 * 212.87982 * 21 20 19 24 24 C 1.39774 * 111.00087 * 76.00893 * 16 15 14 25 25 H 0.97005 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.12400 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.87470 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.75064 * 180.02562 * 12 11 10 29 29 H 1.07995 * 119.87208 * 179.97438 * 13 12 11 30 30 H 1.08999 * 109.46976 * 14.92717 * 15 14 13 31 31 H 1.09005 * 109.47195 * 134.92263 * 15 14 13 32 32 H 1.08996 * 109.74428 * 269.98208 * 17 16 15 33 33 H 1.09001 * 109.74389 * 30.70608 * 17 16 15 34 34 H 1.08995 * 109.05340 * 334.50853 * 18 17 16 35 35 H 1.08994 * 109.05090 * 215.60387 * 18 17 16 36 36 H 1.08998 * 108.97768 * 198.40016 * 19 18 17 37 37 H 1.08998 * 108.91790 * 79.63561 * 19 18 17 38 38 H 1.09000 * 108.85517 * 197.68029 * 20 19 18 39 39 H 1.08997 * 108.76916 * 79.24436 * 20 19 18 40 40 H 0.96699 * 114.00325 * 60.45635 * 23 21 20 41 41 H 1.09000 * 109.01977 * 309.71873 * 24 16 15 42 42 H 1.09001 * 109.02105 * 68.61583 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0654 -1.2249 -0.2194 9 6 1.3304 -2.4196 0.2856 10 6 0.1833 -2.4129 1.1009 11 6 -0.4683 -3.5939 1.3723 12 6 0.0008 -4.7876 0.8455 13 6 1.1297 -4.8061 0.0411 14 6 1.8008 -3.6375 -0.2388 15 6 3.0310 -3.6616 -1.1089 16 7 4.2261 -3.4910 -0.2719 17 6 5.3438 -2.9266 -1.0543 18 6 6.2090 -2.1204 -0.1184 19 6 7.3908 -2.9480 0.4152 20 6 6.9728 -4.3893 0.7683 21 6 5.6384 -4.4511 1.4669 22 1 5.4599 -3.5148 1.9957 23 8 5.6356 -5.5357 2.3973 24 6 4.5291 -4.6700 0.4150 25 1 -0.4850 0.8401 0.0004 26 1 -0.1845 -1.4840 1.5113 27 1 -1.3486 -3.5912 1.9981 28 1 -0.5172 -5.7099 1.0634 29 1 1.4865 -5.7417 -0.3635 30 1 3.0872 -4.6160 -1.6323 31 1 2.9778 -2.8512 -1.8359 32 1 5.9296 -3.7336 -1.4943 33 1 4.9534 -2.2822 -1.8420 34 1 5.6039 -1.7812 0.7222 35 1 6.5951 -1.2513 -0.6509 36 1 7.7872 -2.4649 1.3083 37 1 8.1709 -2.9813 -0.3454 38 1 7.7310 -4.8269 1.4177 39 1 6.9169 -4.9733 -0.1503 40 1 6.3088 -5.4633 3.0877 41 1 3.6305 -5.0301 0.9159 42 1 4.8625 -5.4221 -0.3001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:01 Heat of formation + Delta-G solvation = -48.669278 kcal Electronic energy + Delta-G solvation = -22259.463672 eV Core-core repulsion = 19202.879445 eV Total energy + Delta-G solvation = -3056.584227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79906 -39.24071 -37.34862 -35.44231 -35.17928 -32.10665 -31.67088 -31.20004 -28.09039 -26.89548 -25.92520 -24.81272 -22.76800 -21.81363 -21.18466 -20.49340 -18.95723 -18.21468 -17.15320 -16.90952 -16.47282 -16.20899 -15.92807 -15.54662 -15.28645 -14.83411 -14.75286 -14.36135 -14.26735 -13.97456 -13.35534 -13.32717 -13.11900 -12.85147 -12.70824 -12.55780 -12.50166 -12.38118 -12.03769 -11.80122 -11.76435 -11.45717 -11.30061 -11.20882 -11.01478 -10.98410 -10.68776 -9.19272 -9.12707 -8.90214 -8.49902 -6.18226 1.03526 1.16477 1.41903 1.55718 1.56922 2.26995 2.80721 2.94956 3.59503 3.82686 3.88584 3.97454 4.16931 4.20877 4.25735 4.35126 4.48321 4.51990 4.53929 4.61881 4.72538 4.76613 4.79380 4.86127 4.96060 5.01849 5.06352 5.16055 5.23792 5.28688 5.31005 5.42749 5.45213 5.56399 5.60286 5.84900 6.09490 6.23584 6.30334 6.38350 6.51188 6.71024 6.85602 6.93761 7.12778 7.19786 8.46923 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.007751 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.032621 B = 3611.722441 C = 4973.043896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.029 3.971 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.102 3.898 10 C -0.193 4.193 11 C -0.117 4.117 12 C -0.246 4.246 13 C -0.096 4.096 14 C -0.194 4.194 15 C 0.142 3.858 16 N -0.550 5.550 17 C 0.066 3.934 18 C -0.122 4.122 19 C -0.107 4.107 20 C -0.142 4.142 21 C 0.112 3.888 22 H 0.051 0.949 23 O -0.585 6.585 24 C 0.095 3.905 25 H 0.281 0.719 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.394 0.606 41 H 0.051 0.949 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -3.516 -0.187 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.493 4.493 8 H 0.111 0.889 9 C 0.100 3.900 10 C -0.212 4.212 11 C -0.135 4.135 12 C -0.265 4.265 13 C -0.114 4.114 14 C -0.196 4.196 15 C 0.016 3.984 16 N -0.275 5.275 17 C -0.061 4.061 18 C -0.160 4.160 19 C -0.144 4.144 20 C -0.180 4.180 21 C 0.053 3.947 22 H 0.069 0.931 23 O -0.393 6.393 24 C -0.035 4.035 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.244 0.756 41 H 0.070 0.930 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.131 -3.253 -0.248 13.530 hybrid contribution 0.114 0.380 -0.059 0.401 sum 13.245 -2.873 -0.307 13.556 Atomic orbital electron populations 1.69920 1.08991 1.29747 1.37811 1.26769 0.95354 1.04404 0.91889 0.85303 0.80073 0.76977 0.78281 1.17410 1.19665 1.19901 1.19922 0.97376 0.90612 1.41422 0.88865 1.17724 0.90960 0.92966 0.88379 1.21358 1.00390 0.96501 1.02980 1.20916 0.99035 0.93459 1.00132 1.20651 1.01343 0.96873 1.07619 1.20717 0.95872 0.96487 0.98371 1.19924 1.00283 0.93360 1.06040 1.20480 0.86796 0.98621 0.92539 1.58387 1.05511 1.31628 1.31955 1.21903 0.91030 0.98001 0.95133 1.21453 0.96455 0.98532 0.99552 1.21834 0.97344 0.93760 1.01500 1.22095 0.96451 0.98161 1.01306 1.21465 0.94651 0.88798 0.89775 0.93060 1.86433 1.61578 1.47512 1.43752 1.20528 0.97980 0.90129 0.94905 0.90845 0.88547 0.88042 0.87257 0.87628 0.95179 0.91481 0.93288 0.91172 0.92722 0.90777 0.91278 0.90432 0.89759 0.92284 0.75597 0.93047 0.96638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.70 10.91 21.83 0.24 -44.46 16 2 C 0.03 1.44 5.21 85.26 0.44 1.89 16 3 Si 0.97 38.63 29.58 68.60 2.03 40.66 16 4 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.46 -24.24 8.20 23.46 0.19 -24.05 16 8 H 0.09 4.68 6.68 -2.91 -0.02 4.66 16 9 C 0.10 5.50 5.55 -21.29 -0.12 5.38 16 10 C -0.19 -10.54 8.67 22.73 0.20 -10.34 16 11 C -0.12 -5.76 10.02 22.22 0.22 -5.53 16 12 C -0.25 -11.27 10.05 22.46 0.23 -11.05 16 13 C -0.10 -4.35 8.94 22.22 0.20 -4.15 16 14 C -0.19 -9.27 4.81 -19.41 -0.09 -9.37 16 15 C 0.14 5.70 4.36 85.56 0.37 6.08 16 16 N -0.55 -19.86 3.23 -917.80 -2.96 -22.82 16 17 C 0.07 1.91 5.37 85.45 0.46 2.37 16 18 C -0.12 -3.17 5.41 30.16 0.16 -3.01 16 19 C -0.11 -2.14 5.91 31.27 0.18 -1.96 16 20 C -0.14 -3.09 5.05 30.26 0.15 -2.94 16 21 C 0.11 3.25 3.19 30.35 0.10 3.35 16 22 H 0.05 1.65 7.11 -2.39 -0.02 1.63 16 23 O -0.58 -16.28 13.27 -148.98 -1.98 -18.26 16 24 C 0.09 3.29 4.42 88.07 0.39 3.68 16 25 H 0.28 13.74 8.30 -92.70 -0.77 12.97 16 26 H 0.10 5.55 6.23 -2.91 -0.02 5.53 16 27 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 29 H 0.11 4.22 7.99 -2.91 -0.02 4.20 16 30 H 0.03 1.12 7.78 -2.39 -0.02 1.10 16 31 H 0.07 2.78 6.90 -2.38 -0.02 2.77 16 32 H 0.05 1.27 6.66 -2.39 -0.02 1.25 16 33 H 0.07 2.08 7.38 -2.39 -0.02 2.06 16 34 H 0.05 1.74 7.26 -2.39 -0.02 1.73 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.45 7.86 -2.39 -0.02 1.43 16 39 H 0.06 1.34 6.57 -2.39 -0.02 1.32 16 40 H 0.39 6.84 8.94 -74.06 -0.66 6.18 16 41 H 0.05 2.13 6.68 -2.39 -0.02 2.11 16 42 H 0.02 0.52 7.54 -2.39 -0.02 0.51 16 Total: -1.00 -61.43 323.90 0.77 -60.67 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.35 Total: 33.88 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.09 Total: -49.66 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -2.73 Total: -67.29 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -1.98 Total: -18.26 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -61.43 0.77 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.000 kcal (2) G-P(sol) polarization free energy of solvation -61.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds