Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48501 * 109.47018 * 239.99653 * 3 2 1 5 5 H 1.48499 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47013 * 120.00009 * 3 2 1 7 7 C 1.39944 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99398 * 163.55295 * 7 2 1 9 9 C 1.41387 * 120.00488 * 343.55117 * 7 2 1 10 10 C 1.40743 * 120.24282 * 334.15705 * 9 7 2 11 11 C 1.37594 * 119.74085 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25403 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.49943 * 359.97438 * 12 11 10 14 14 C 1.37631 * 120.24904 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12937 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47141 * 259.99678 * 15 14 13 17 17 C 1.44277 * 110.99823 * 48.01663 * 16 15 14 18 18 C 1.54067 * 111.98421 * 219.31117 * 17 16 15 19 19 C 1.54301 * 112.28490 * 318.91105 * 18 17 16 20 20 C 1.50456 * 113.03625 * 318.30784 * 19 18 17 21 21 C 1.54501 * 108.85753 * 92.15207 * 20 19 18 22 22 H 1.09004 * 109.05819 * 43.34468 * 21 20 19 23 23 O 1.42891 * 109.00383 * 162.30209 * 21 20 19 24 24 C 1.45872 * 111.59225 * 282.80729 * 21 20 19 25 25 H 0.96997 * 120.00444 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.12721 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.87167 * 180.24838 * 11 10 9 28 28 H 1.08001 * 119.75027 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.87150 * 180.02562 * 13 12 11 30 30 H 1.08997 * 109.47141 * 19.99750 * 15 14 13 31 31 H 1.08999 * 109.47262 * 139.99611 * 15 14 13 32 32 H 1.09005 * 108.97734 * 339.95809 * 17 16 15 33 33 H 1.08999 * 108.98003 * 98.66165 * 17 16 15 34 34 H 1.09002 * 108.91973 * 198.19269 * 18 17 16 35 35 H 1.08998 * 108.91943 * 79.63701 * 18 17 16 36 36 H 1.09001 * 108.76849 * 197.38520 * 19 18 17 37 37 H 1.09007 * 108.67066 * 79.15821 * 19 18 17 38 38 H 1.09005 * 109.57576 * 332.33599 * 20 19 18 39 39 H 1.08998 * 109.67698 * 212.02711 * 20 19 18 40 40 H 0.96701 * 113.99821 * 302.05323 * 23 21 20 41 41 H 1.09004 * 108.79056 * 300.44246 * 24 21 20 42 42 H 1.08997 * 108.70679 * 182.14844 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0548 -1.2312 -0.2643 9 6 1.3444 -2.4113 0.3478 10 6 0.2135 -2.3789 1.1849 11 6 -0.4240 -3.5523 1.5166 12 6 0.0435 -4.7632 1.0292 13 6 1.1558 -4.8069 0.2032 14 6 1.8092 -3.6457 -0.1418 15 6 3.0186 -3.6964 -1.0395 16 7 4.2374 -3.6023 -0.2249 17 6 4.1845 -4.5141 0.8920 18 6 4.7734 -3.8922 2.1726 19 6 6.0535 -3.0775 1.8923 20 6 6.9761 -3.7495 0.9120 21 6 6.6426 -3.2492 -0.5112 22 1 6.4900 -2.1703 -0.4826 23 8 7.7412 -3.5421 -1.3767 24 6 5.4399 -3.8864 -1.0360 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1526 -1.4368 1.5653 27 1 -1.2944 -3.5295 2.1556 28 1 -0.4628 -5.6794 1.2951 29 1 1.5110 -5.7557 -0.1710 30 1 3.0222 -4.6362 -1.5915 31 1 2.9854 -2.8630 -1.7413 32 1 3.1459 -4.7888 1.0764 33 1 4.7483 -5.4130 0.6427 34 1 5.0094 -4.6901 2.8767 35 1 4.0280 -3.2359 2.6219 36 1 6.5871 -2.9288 2.8311 37 1 5.7674 -2.1040 1.4941 38 1 6.8375 -4.8295 0.9614 39 1 8.0101 -3.5027 1.1528 40 1 8.5795 -3.1519 -1.0939 41 1 5.5976 -4.9646 -1.0644 42 1 5.2704 -3.5299 -2.0520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = -30.378457 kcal Electronic energy + Delta-G solvation = -22323.811567 eV Core-core repulsion = 19268.020489 eV Total energy + Delta-G solvation = -3055.791077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.42978 -37.72119 -35.99039 -33.75671 -33.58194 -30.98559 -30.09086 -29.37085 -26.71833 -25.17353 -24.60213 -23.22822 -20.96762 -20.35056 -19.83488 -18.86212 -17.31161 -17.06313 -15.80961 -15.28947 -14.89070 -14.83299 -14.36153 -13.86357 -13.71363 -13.64662 -13.22525 -12.96058 -12.60281 -12.44871 -12.07724 -11.58321 -11.51848 -11.40798 -11.28991 -11.06027 -10.91206 -10.69459 -10.55098 -10.43987 -10.25587 -10.15740 -9.93778 -9.60174 -9.49846 -9.25781 -9.11295 -7.67135 -7.33110 -7.30483 -6.71438 -4.29093 2.80015 2.94193 3.09520 3.13174 3.27818 3.97477 4.05029 4.67600 4.84946 5.01430 5.14136 5.38984 5.47277 5.62449 5.66221 5.70711 5.81173 5.87888 5.95635 6.11691 6.16315 6.21810 6.25783 6.26883 6.34255 6.46556 6.48659 6.53328 6.65767 6.73265 6.79031 6.88627 7.15096 7.28361 7.40511 7.63672 7.68005 7.75976 7.77650 7.98299 8.09751 8.16637 8.34099 8.70991 8.96846 9.03253 10.23120 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.007606 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.750834 B = 3680.351256 C = 4844.721889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.444 4.444 8 H 0.092 0.908 9 C 0.132 3.868 10 C -0.163 4.163 11 C -0.105 4.105 12 C -0.246 4.246 13 C -0.087 4.087 14 C -0.200 4.200 15 C 0.127 3.873 16 N -0.508 5.508 17 C 0.044 3.956 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.141 4.141 21 C 0.113 3.887 22 H 0.062 0.938 23 O -0.576 6.576 24 C 0.056 3.944 25 H 0.279 0.721 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.022 0.978 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.375 0.625 41 H 0.035 0.965 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 -3.491 1.464 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.110 0.890 9 C 0.129 3.871 10 C -0.182 4.182 11 C -0.124 4.124 12 C -0.266 4.266 13 C -0.105 4.105 14 C -0.202 4.202 15 C 0.001 3.999 16 N -0.233 5.233 17 C -0.085 4.085 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.179 4.179 21 C 0.054 3.946 22 H 0.080 0.920 23 O -0.381 6.381 24 C -0.072 4.072 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.034 0.966 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.222 0.778 41 H 0.053 0.947 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.250 -3.153 1.279 9.856 hybrid contribution 0.595 0.238 0.065 0.644 sum 9.846 -2.915 1.344 10.356 Atomic orbital electron populations 1.69829 1.07598 1.29151 1.35620 1.25972 0.94639 1.01339 0.92421 0.86421 0.80147 0.80456 0.80016 1.19038 1.20658 1.18864 1.19728 0.98231 0.90359 1.39013 0.89009 1.17359 0.90340 0.91487 0.87945 1.21360 0.99211 0.96587 1.01046 1.20676 0.98495 0.93471 0.99760 1.20280 1.01710 0.96151 1.08424 1.20370 0.96154 0.95671 0.98344 1.19404 1.00437 0.93707 1.06680 1.20742 0.86401 0.98646 0.94084 1.61439 1.00918 1.52344 1.08592 1.22081 1.02572 0.92325 0.91536 1.21869 0.96694 0.98915 0.96797 1.21095 0.95352 1.00565 0.97670 1.22022 0.98829 1.01323 0.95715 1.20728 0.86444 0.99201 0.88181 0.92032 1.86459 1.19896 1.78525 1.53179 1.20704 0.90447 0.98338 0.97664 0.91009 0.86596 0.89730 0.89823 0.89919 0.96628 0.90365 0.89130 0.95932 0.93313 0.91420 0.93312 0.91086 0.91813 0.92370 0.77821 0.94676 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.97 55.55 0.61 -19.68 16 2 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 3 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.44 -11.22 8.18 -37.75 -0.31 -11.53 16 8 H 0.09 2.28 6.85 -52.49 -0.36 1.92 16 9 C 0.13 3.34 5.56 -106.82 -0.59 2.74 16 10 C -0.16 -4.15 8.69 -38.87 -0.34 -4.48 16 11 C -0.11 -2.46 10.02 -39.66 -0.40 -2.85 16 12 C -0.25 -5.45 10.05 -39.29 -0.39 -5.85 16 13 C -0.09 -1.89 7.86 -39.66 -0.31 -2.20 16 14 C -0.20 -4.57 4.17 -103.91 -0.43 -5.01 16 15 C 0.13 2.57 4.37 -4.98 -0.02 2.54 16 16 N -0.51 -9.29 4.09 -240.99 -0.99 -10.27 16 17 C 0.04 0.76 4.87 -4.67 -0.02 0.74 16 18 C -0.10 -1.67 6.15 -25.49 -0.16 -1.83 16 19 C -0.11 -1.56 5.42 -27.32 -0.15 -1.71 16 20 C -0.14 -1.83 5.22 -27.21 -0.14 -1.97 16 21 C 0.11 1.62 3.18 -29.32 -0.09 1.52 16 22 H 0.06 0.93 7.59 -51.93 -0.39 0.53 16 23 O -0.58 -7.58 13.25 -35.23 -0.47 -8.05 16 24 C 0.06 0.92 4.49 -6.70 -0.03 0.89 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.12 3.07 6.21 -52.49 -0.33 2.75 16 27 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.08 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.08 1.62 8.03 -52.48 -0.42 1.20 16 30 H 0.02 0.30 7.94 -51.93 -0.41 -0.12 16 31 H 0.08 1.67 7.35 -51.93 -0.38 1.29 16 32 H 0.09 1.77 4.41 -51.93 -0.23 1.54 16 33 H 0.02 0.37 6.51 -51.93 -0.34 0.03 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.14 7.38 -51.93 -0.38 0.75 16 38 H 0.06 0.86 7.15 -51.93 -0.37 0.49 16 39 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.38 3.22 9.00 45.56 0.41 3.63 16 41 H 0.04 0.57 7.24 -51.93 -0.38 0.19 16 42 H 0.07 1.17 7.81 -51.93 -0.41 0.76 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -26.73 322.99 -10.14 -36.87 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.66 Total: 9.91 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -3.48 Total: -27.28 kcal Atomic # 7 Polarization: -29.57 SS G_CDS: -0.38 Total: -29.95 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.47 Total: -8.05 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.73 -10.14 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.496 kcal (2) G-P(sol) polarization free energy of solvation -26.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds