Wall clock time and date at job start Mon Mar 30 2020 01:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48501 * 109.47018 * 239.99653 * 3 2 1 5 5 H 1.48499 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47013 * 120.00009 * 3 2 1 7 7 C 1.39944 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99398 * 163.55295 * 7 2 1 9 9 C 1.41387 * 120.00488 * 343.55117 * 7 2 1 10 10 C 1.40743 * 120.24282 * 334.15705 * 9 7 2 11 11 C 1.37594 * 119.74085 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25403 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.49943 * 359.97438 * 12 11 10 14 14 C 1.37631 * 120.24904 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12937 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47141 * 259.99678 * 15 14 13 17 17 C 1.44277 * 110.99823 * 48.01663 * 16 15 14 18 18 C 1.54067 * 111.98421 * 219.31117 * 17 16 15 19 19 C 1.54301 * 112.28490 * 318.91105 * 18 17 16 20 20 C 1.50456 * 113.03625 * 318.30784 * 19 18 17 21 21 C 1.54501 * 108.85753 * 92.15207 * 20 19 18 22 22 H 1.09004 * 109.05819 * 43.34468 * 21 20 19 23 23 O 1.42891 * 109.00383 * 162.30209 * 21 20 19 24 24 C 1.45872 * 111.59225 * 282.80729 * 21 20 19 25 25 H 0.96997 * 120.00444 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.12721 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.87167 * 180.24838 * 11 10 9 28 28 H 1.08001 * 119.75027 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.87150 * 180.02562 * 13 12 11 30 30 H 1.08997 * 109.47141 * 19.99750 * 15 14 13 31 31 H 1.08999 * 109.47262 * 139.99611 * 15 14 13 32 32 H 1.09005 * 108.97734 * 339.95809 * 17 16 15 33 33 H 1.08999 * 108.98003 * 98.66165 * 17 16 15 34 34 H 1.09002 * 108.91973 * 198.19269 * 18 17 16 35 35 H 1.08998 * 108.91943 * 79.63701 * 18 17 16 36 36 H 1.09001 * 108.76849 * 197.38520 * 19 18 17 37 37 H 1.09007 * 108.67066 * 79.15821 * 19 18 17 38 38 H 1.09005 * 109.57576 * 332.33599 * 20 19 18 39 39 H 1.08998 * 109.67698 * 212.02711 * 20 19 18 40 40 H 0.96701 * 113.99821 * 302.05323 * 23 21 20 41 41 H 1.09004 * 108.79056 * 300.44246 * 24 21 20 42 42 H 1.08997 * 108.70679 * 182.14844 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0548 -1.2312 -0.2643 9 6 1.3444 -2.4113 0.3478 10 6 0.2135 -2.3789 1.1849 11 6 -0.4240 -3.5523 1.5166 12 6 0.0435 -4.7632 1.0292 13 6 1.1558 -4.8069 0.2032 14 6 1.8092 -3.6457 -0.1418 15 6 3.0186 -3.6964 -1.0395 16 7 4.2374 -3.6023 -0.2249 17 6 4.1845 -4.5141 0.8920 18 6 4.7734 -3.8922 2.1726 19 6 6.0535 -3.0775 1.8923 20 6 6.9761 -3.7495 0.9120 21 6 6.6426 -3.2492 -0.5112 22 1 6.4900 -2.1703 -0.4826 23 8 7.7412 -3.5421 -1.3767 24 6 5.4399 -3.8864 -1.0360 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1526 -1.4368 1.5653 27 1 -1.2944 -3.5295 2.1556 28 1 -0.4628 -5.6794 1.2951 29 1 1.5110 -5.7557 -0.1710 30 1 3.0222 -4.6362 -1.5915 31 1 2.9854 -2.8630 -1.7413 32 1 3.1459 -4.7888 1.0764 33 1 4.7483 -5.4130 0.6427 34 1 5.0094 -4.6901 2.8767 35 1 4.0280 -3.2359 2.6219 36 1 6.5871 -2.9288 2.8311 37 1 5.7674 -2.1040 1.4941 38 1 6.8375 -4.8295 0.9614 39 1 8.0101 -3.5027 1.1528 40 1 8.5795 -3.1519 -1.0939 41 1 5.5976 -4.9646 -1.0644 42 1 5.2704 -3.5299 -2.0520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:04 Heat of formation + Delta-G solvation = -46.350379 kcal Electronic energy + Delta-G solvation = -22324.504161 eV Core-core repulsion = 19268.020489 eV Total energy + Delta-G solvation = -3056.483672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79950 -39.31645 -37.28074 -35.45855 -35.01401 -32.41689 -31.64492 -31.11868 -28.23551 -26.96617 -25.86871 -24.71105 -22.80214 -21.59143 -21.42811 -20.29071 -18.95778 -18.36641 -17.26987 -16.94199 -16.40244 -16.14989 -15.92231 -15.44254 -15.27901 -14.98240 -14.61415 -14.34825 -14.24377 -13.76991 -13.40534 -13.29788 -13.21428 -12.88733 -12.74619 -12.70270 -12.40532 -12.36783 -12.08449 -12.01004 -11.55339 -11.34600 -11.30692 -11.21254 -11.05570 -10.94943 -10.68681 -9.19353 -9.17500 -9.04716 -8.55200 -6.20610 1.01489 1.13109 1.39909 1.49467 1.57521 2.24637 2.74628 2.88784 3.70267 3.78630 3.94448 4.01249 4.15590 4.22960 4.30901 4.36479 4.41908 4.50520 4.52861 4.63743 4.70359 4.76952 4.83233 4.90317 5.00333 5.03320 5.14700 5.18180 5.29510 5.31788 5.34296 5.41842 5.46339 5.56238 5.57059 5.80999 6.04684 6.20549 6.25951 6.34018 6.43238 6.50034 6.81956 6.91703 7.08625 7.15837 8.41161 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.007606 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.750834 B = 3680.351256 C = 4844.721889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.104 3.896 10 C -0.192 4.192 11 C -0.113 4.113 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.199 4.199 15 C 0.134 3.866 16 N -0.517 5.517 17 C 0.046 3.954 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.132 4.132 21 C 0.118 3.882 22 H 0.050 0.950 23 O -0.584 6.584 24 C 0.058 3.942 25 H 0.283 0.717 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.397 0.603 41 H 0.039 0.961 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.834 -4.526 1.668 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.102 3.898 10 C -0.211 4.211 11 C -0.131 4.131 12 C -0.263 4.263 13 C -0.108 4.108 14 C -0.201 4.201 15 C 0.008 3.992 16 N -0.242 5.242 17 C -0.083 4.083 18 C -0.142 4.142 19 C -0.142 4.142 20 C -0.169 4.169 21 C 0.059 3.941 22 H 0.068 0.932 23 O -0.392 6.392 24 C -0.069 4.069 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.247 0.753 41 H 0.057 0.943 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.219 -4.196 1.488 12.070 hybrid contribution -0.016 0.416 -0.003 0.416 sum 11.204 -3.780 1.486 11.917 Atomic orbital electron populations 1.69895 1.08883 1.30094 1.36804 1.26704 0.95298 1.04269 0.91754 0.85434 0.78874 0.76576 0.79944 1.18570 1.19828 1.18720 1.19828 0.98110 0.91293 1.40382 0.89491 1.17671 0.90870 0.92711 0.88583 1.21326 1.00523 0.96686 1.02600 1.20924 0.98930 0.93339 0.99925 1.20644 1.01531 0.96690 1.07448 1.20676 0.95797 0.96403 0.97897 1.19699 1.00994 0.93301 1.06082 1.20573 0.86589 0.98479 0.93558 1.61368 1.00868 1.53077 1.08865 1.22056 1.01592 0.92846 0.91789 1.21853 0.96819 0.99200 0.96295 1.21052 0.94934 0.99162 0.99082 1.21952 1.00039 1.00918 0.94032 1.20530 0.86190 0.98275 0.89139 0.93174 1.86412 1.20727 1.78820 1.53204 1.20721 0.90439 0.98716 0.97041 0.90613 0.88633 0.87931 0.86970 0.87268 0.95283 0.92232 0.91317 0.94385 0.91168 0.94416 0.91227 0.93301 0.91818 0.89408 0.75347 0.94259 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.82 10.97 21.83 0.24 -43.58 16 2 C 0.03 1.70 5.16 85.26 0.44 2.14 16 3 Si 0.97 39.07 29.59 68.60 2.03 41.10 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.47 -24.46 8.18 23.46 0.19 -24.27 16 8 H 0.09 4.50 6.85 -2.91 -0.02 4.48 16 9 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 10 C -0.19 -10.11 8.69 22.73 0.20 -9.91 16 11 C -0.11 -5.27 10.02 22.22 0.22 -5.05 16 12 C -0.24 -10.47 10.05 22.46 0.23 -10.24 16 13 C -0.09 -3.78 7.86 22.22 0.17 -3.61 16 14 C -0.20 -9.15 4.17 -19.41 -0.08 -9.23 16 15 C 0.13 5.44 4.37 85.56 0.37 5.82 16 16 N -0.52 -18.70 4.09 -916.37 -3.75 -22.45 16 17 C 0.05 1.55 4.87 87.15 0.42 1.97 16 18 C -0.10 -3.20 6.15 31.40 0.19 -3.01 16 19 C -0.10 -2.79 5.42 30.21 0.16 -2.63 16 20 C -0.13 -3.01 5.22 30.28 0.16 -2.85 16 21 C 0.12 3.13 3.18 28.92 0.09 3.23 16 22 H 0.05 1.46 7.59 -2.38 -0.02 1.44 16 23 O -0.58 -13.79 13.25 -148.98 -1.97 -15.77 16 24 C 0.06 1.83 4.49 83.94 0.38 2.20 16 25 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 26 H 0.10 5.34 6.21 -2.91 -0.02 5.32 16 27 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 28 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.11 4.02 8.03 -2.91 -0.02 4.00 16 30 H 0.03 1.08 7.94 -2.39 -0.02 1.06 16 31 H 0.06 2.61 7.35 -2.39 -0.02 2.60 16 32 H 0.07 2.63 4.41 -2.38 -0.01 2.62 16 33 H 0.04 1.16 6.51 -2.39 -0.02 1.15 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.53 7.38 -2.38 -0.02 1.51 16 38 H 0.06 1.49 7.15 -2.38 -0.02 1.48 16 39 H 0.09 1.52 8.07 -2.39 -0.02 1.50 16 40 H 0.40 5.50 9.00 -74.06 -0.67 4.83 16 41 H 0.04 1.19 7.24 -2.39 -0.02 1.18 16 42 H 0.06 2.00 7.81 -2.39 -0.02 1.98 16 Total: -1.00 -58.59 322.99 -0.07 -58.66 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.35 Total: 32.13 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 3.04 Total: -50.09 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -3.51 Total: -66.03 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.97 Total: -15.77 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -58.59 -0.07 -58.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.310 kcal (2) G-P(sol) polarization free energy of solvation -58.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds