Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47582 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47133 * 120.00313 * 3 2 1 7 7 C 1.39943 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99950 * 163.55798 * 7 2 1 9 9 C 1.41396 * 120.00167 * 343.56410 * 7 2 1 10 10 C 1.40735 * 120.24405 * 334.16661 * 9 7 2 11 11 C 1.37591 * 119.74560 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25167 * 359.97438 * 11 10 9 13 13 C 1.38622 * 120.49604 * 359.76369 * 12 11 10 14 14 C 1.37638 * 120.24645 * 0.51074 * 13 12 11 15 15 C 1.50703 * 120.12148 * 179.74503 * 14 13 12 16 16 N 1.46901 * 109.46798 * 259.72715 * 15 14 13 17 17 C 1.46852 * 110.99971 * 190.00521 * 16 15 14 18 18 C 1.53036 * 109.51850 * 174.16817 * 17 16 15 19 19 C 1.53099 * 109.28882 * 59.17882 * 18 17 16 20 20 C 1.53003 * 109.52324 * 182.43976 * 19 18 17 21 21 O 1.42908 * 109.46940 * 294.67803 * 20 19 18 22 22 C 1.53122 * 109.15540 * 302.34055 * 19 18 17 23 23 C 1.46845 * 111.00467 * 65.79492 * 16 15 14 24 24 H 0.97003 * 119.99845 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12393 * 359.95339 * 10 9 7 26 26 H 1.08003 * 119.87636 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.75329 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.87184 * 180.26031 * 13 12 11 29 29 H 1.08993 * 109.46897 * 139.73065 * 15 14 13 30 30 H 1.08990 * 109.47636 * 19.72602 * 15 14 13 31 31 H 1.09009 * 109.45862 * 294.17282 * 17 16 15 32 32 H 1.08993 * 109.46272 * 54.14903 * 17 16 15 33 33 H 1.08994 * 109.50280 * 179.11411 * 18 17 16 34 34 H 1.09006 * 109.50048 * 299.23301 * 18 17 16 35 35 H 1.08994 * 109.57921 * 62.28065 * 19 18 17 36 36 H 1.08997 * 109.47275 * 54.67674 * 20 19 18 37 37 H 1.09000 * 109.47143 * 174.68355 * 20 19 18 38 38 H 0.96693 * 113.99634 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.50502 * 297.71344 * 22 19 18 40 40 H 1.09000 * 109.53204 * 177.61849 * 22 19 18 41 41 H 1.09002 * 109.46098 * 305.85530 * 23 16 15 42 42 H 1.08996 * 109.46288 * 65.82474 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0549 -1.2309 -0.2653 9 6 1.3444 -2.4116 0.3454 10 6 0.2132 -2.3801 1.1821 11 6 -0.4249 -3.5537 1.5117 12 6 0.0421 -4.7641 1.0225 13 6 1.1522 -4.8065 0.1933 14 6 1.8096 -3.6455 -0.1450 15 6 3.0195 -3.6955 -1.0421 16 7 4.2378 -3.6031 -0.2265 17 6 5.4234 -3.4102 -1.0713 18 6 6.6491 -3.1735 -0.1861 19 6 6.8474 -4.3794 0.7360 20 6 8.0352 -4.1224 1.6656 21 8 9.2356 -4.0439 0.8941 22 6 5.5804 -4.5877 1.5703 23 6 4.3857 -4.7836 0.6343 24 1 -0.4850 0.8401 0.0004 25 1 -0.1523 -1.4384 1.5641 26 1 -1.2930 -3.5320 2.1539 27 1 -0.4652 -5.6803 1.2860 28 1 1.5048 -5.7544 -0.1854 29 1 2.9871 -2.8611 -1.7425 30 1 3.0231 -4.6345 -1.5954 31 1 5.5827 -4.2990 -1.6820 32 1 5.2711 -2.5470 -1.7192 33 1 7.5315 -3.0459 -0.8130 34 1 6.4962 -2.2770 0.4149 35 1 7.0396 -5.2695 0.1371 36 1 7.8834 -3.1835 2.1980 37 1 8.1177 -4.9382 2.3838 38 1 10.0309 -3.8817 1.4196 39 1 5.4108 -3.7135 2.1989 40 1 5.6990 -5.4703 2.1988 41 1 3.4797 -4.9180 1.2252 42 1 4.5500 -5.6659 0.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235517004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -43.663239 kcal Electronic energy + Delta-G solvation = -21738.967921 eV Core-core repulsion = 18682.600772 eV Total energy + Delta-G solvation = -3056.367149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.06189 -37.59031 -36.47277 -33.60325 -33.46441 -30.61662 -30.09093 -29.30443 -26.99987 -25.24584 -23.80958 -22.74894 -21.36956 -20.84762 -19.46260 -19.31345 -17.31792 -17.05759 -15.57667 -15.28271 -15.01667 -14.65877 -14.42378 -14.09390 -14.01629 -13.41023 -13.22208 -12.87165 -12.71071 -12.50105 -12.05159 -11.86932 -11.54375 -11.40794 -11.14095 -10.98958 -10.88535 -10.80176 -10.58171 -10.47982 -10.36384 -10.15548 -10.04349 -9.84471 -9.43855 -9.20749 -9.08024 -7.60853 -7.28217 -7.23716 -6.66901 -4.24327 2.85414 3.02223 3.11662 3.15579 3.31972 4.00670 4.17472 4.56483 4.75406 4.89618 5.00364 5.19364 5.44309 5.51707 5.57996 5.69389 5.77020 5.82044 5.90665 5.97227 6.10079 6.10275 6.17022 6.28965 6.32135 6.39579 6.42057 6.48898 6.54878 6.64498 6.67527 6.92284 7.18773 7.34169 7.46040 7.53727 7.69590 7.74951 7.83234 8.02625 8.15459 8.21968 8.40082 8.75600 9.02259 9.09253 10.27743 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.006149 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.071783 B = 4552.334912 C = 5836.290146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.446 4.446 8 H 0.089 0.911 9 C 0.131 3.869 10 C -0.164 4.164 11 C -0.107 4.107 12 C -0.247 4.247 13 C -0.087 4.087 14 C -0.193 4.193 15 C 0.126 3.874 16 N -0.522 5.522 17 C 0.055 3.945 18 C -0.104 4.104 19 C -0.087 4.087 20 C 0.081 3.919 21 O -0.574 6.574 22 C -0.109 4.109 23 C 0.061 3.939 24 H 0.278 0.722 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.013 0.987 31 H 0.021 0.979 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.531 -4.757 1.973 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.129 3.871 10 C -0.183 4.183 11 C -0.126 4.126 12 C -0.266 4.266 13 C -0.106 4.106 14 C -0.195 4.195 15 C 0.000 4.000 16 N -0.247 5.247 17 C -0.073 4.073 18 C -0.142 4.142 19 C -0.105 4.105 20 C 0.003 3.997 21 O -0.379 6.379 22 C -0.147 4.147 23 C -0.067 4.067 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.221 0.779 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.862 -4.281 1.749 11.805 hybrid contribution 0.644 0.121 0.004 0.656 sum 11.506 -4.160 1.753 12.360 Atomic orbital electron populations 1.69837 1.07560 1.29035 1.35956 1.25960 0.94640 1.01267 0.92485 0.86431 0.80124 0.80534 0.79962 1.19109 1.20667 1.18918 1.19690 0.98088 0.90419 1.39315 0.89260 1.17357 0.90345 0.91524 0.87921 1.21340 0.99250 0.96552 1.01181 1.20662 0.98539 0.93502 0.99859 1.20279 1.01856 0.96075 1.08401 1.20361 0.96224 0.95647 0.98358 1.19447 0.99948 0.93660 1.06404 1.20615 0.87284 0.98453 0.93652 1.61935 1.01578 1.38775 1.22378 1.22062 0.90696 0.99842 0.94696 1.21543 0.96875 0.97797 0.98007 1.21194 0.93028 0.99397 0.96915 1.22284 0.84717 0.99478 0.93213 1.86492 1.17256 1.95706 1.38444 1.21571 0.93346 1.01899 0.97853 1.21978 0.98517 0.90630 0.95543 0.91085 0.86654 0.89808 0.89929 0.90075 0.90606 0.96894 0.96047 0.90926 0.91622 0.91216 0.91270 0.93473 0.94014 0.77947 0.90781 0.92144 0.89653 0.96263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 10.97 55.55 0.61 -20.04 16 2 C 0.07 1.84 5.16 -17.34 -0.09 1.75 16 3 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.45 -11.53 8.18 -37.74 -0.31 -11.84 16 8 H 0.09 2.27 6.85 -52.49 -0.36 1.91 16 9 C 0.13 3.42 5.56 -106.83 -0.59 2.83 16 10 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 11 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.25 -5.60 10.05 -39.28 -0.39 -5.99 16 13 C -0.09 -1.95 8.57 -39.66 -0.34 -2.29 16 14 C -0.19 -4.53 4.63 -103.91 -0.48 -5.01 16 15 C 0.13 2.60 4.29 -4.97 -0.02 2.58 16 16 N -0.52 -9.75 4.38 -236.12 -1.03 -10.78 16 17 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 18 C -0.10 -1.51 5.25 -26.66 -0.14 -1.65 16 19 C -0.09 -1.15 2.49 -90.50 -0.23 -1.38 16 20 C 0.08 0.90 6.43 37.16 0.24 1.14 16 21 O -0.57 -6.39 13.26 -35.23 -0.47 -6.86 16 22 C -0.11 -1.54 5.38 -26.65 -0.14 -1.69 16 23 C 0.06 1.04 5.26 -3.84 -0.02 1.02 16 24 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 25 H 0.12 3.12 6.21 -52.49 -0.33 2.79 16 26 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 27 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.08 1.63 8.03 -52.49 -0.42 1.21 16 29 H 0.08 1.64 7.19 -51.93 -0.37 1.26 16 30 H 0.01 0.25 7.98 -51.93 -0.41 -0.16 16 31 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 33 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.37 2.37 9.12 45.56 0.42 2.78 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.62 6.32 -51.93 -0.33 1.29 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -28.06 332.10 -10.19 -38.25 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.00 Total: 7.74 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -3.28 Total: -27.23 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: -0.43 Total: -30.82 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.47 Total: -6.86 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.06 -10.19 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235517004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.412 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds