Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47582 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47133 * 120.00313 * 3 2 1 7 7 C 1.39943 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99950 * 163.55798 * 7 2 1 9 9 C 1.41396 * 120.00167 * 343.56410 * 7 2 1 10 10 C 1.40735 * 120.24405 * 334.16661 * 9 7 2 11 11 C 1.37591 * 119.74560 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25167 * 359.97438 * 11 10 9 13 13 C 1.38622 * 120.49604 * 359.76369 * 12 11 10 14 14 C 1.37638 * 120.24645 * 0.51074 * 13 12 11 15 15 C 1.50703 * 120.12148 * 179.74503 * 14 13 12 16 16 N 1.46901 * 109.46798 * 259.72715 * 15 14 13 17 17 C 1.46852 * 110.99971 * 190.00521 * 16 15 14 18 18 C 1.53036 * 109.51850 * 174.16817 * 17 16 15 19 19 C 1.53099 * 109.28882 * 59.17882 * 18 17 16 20 20 C 1.53003 * 109.52324 * 182.43976 * 19 18 17 21 21 O 1.42908 * 109.46940 * 294.67803 * 20 19 18 22 22 C 1.53122 * 109.15540 * 302.34055 * 19 18 17 23 23 C 1.46845 * 111.00467 * 65.79492 * 16 15 14 24 24 H 0.97003 * 119.99845 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12393 * 359.95339 * 10 9 7 26 26 H 1.08003 * 119.87636 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.75329 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.87184 * 180.26031 * 13 12 11 29 29 H 1.08993 * 109.46897 * 139.73065 * 15 14 13 30 30 H 1.08990 * 109.47636 * 19.72602 * 15 14 13 31 31 H 1.09009 * 109.45862 * 294.17282 * 17 16 15 32 32 H 1.08993 * 109.46272 * 54.14903 * 17 16 15 33 33 H 1.08994 * 109.50280 * 179.11411 * 18 17 16 34 34 H 1.09006 * 109.50048 * 299.23301 * 18 17 16 35 35 H 1.08994 * 109.57921 * 62.28065 * 19 18 17 36 36 H 1.08997 * 109.47275 * 54.67674 * 20 19 18 37 37 H 1.09000 * 109.47143 * 174.68355 * 20 19 18 38 38 H 0.96693 * 113.99634 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.50502 * 297.71344 * 22 19 18 40 40 H 1.09000 * 109.53204 * 177.61849 * 22 19 18 41 41 H 1.09002 * 109.46098 * 305.85530 * 23 16 15 42 42 H 1.08996 * 109.46288 * 65.82474 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0549 -1.2309 -0.2653 9 6 1.3444 -2.4116 0.3454 10 6 0.2132 -2.3801 1.1821 11 6 -0.4249 -3.5537 1.5117 12 6 0.0421 -4.7641 1.0225 13 6 1.1522 -4.8065 0.1933 14 6 1.8096 -3.6455 -0.1450 15 6 3.0195 -3.6955 -1.0421 16 7 4.2378 -3.6031 -0.2265 17 6 5.4234 -3.4102 -1.0713 18 6 6.6491 -3.1735 -0.1861 19 6 6.8474 -4.3794 0.7360 20 6 8.0352 -4.1224 1.6656 21 8 9.2356 -4.0439 0.8941 22 6 5.5804 -4.5877 1.5703 23 6 4.3857 -4.7836 0.6343 24 1 -0.4850 0.8401 0.0004 25 1 -0.1523 -1.4384 1.5641 26 1 -1.2930 -3.5320 2.1539 27 1 -0.4652 -5.6803 1.2860 28 1 1.5048 -5.7544 -0.1854 29 1 2.9871 -2.8611 -1.7425 30 1 3.0231 -4.6345 -1.5954 31 1 5.5827 -4.2990 -1.6820 32 1 5.2711 -2.5470 -1.7192 33 1 7.5315 -3.0459 -0.8130 34 1 6.4962 -2.2770 0.4149 35 1 7.0396 -5.2695 0.1371 36 1 7.8834 -3.1835 2.1980 37 1 8.1177 -4.9382 2.3838 38 1 10.0309 -3.8817 1.4196 39 1 5.4108 -3.7135 2.1989 40 1 5.6990 -5.4703 2.1988 41 1 3.4797 -4.9180 1.2252 42 1 4.5500 -5.6659 0.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235517004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -60.739836 kcal Electronic energy + Delta-G solvation = -21739.708417 eV Core-core repulsion = 18682.600772 eV Total energy + Delta-G solvation = -3057.107646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42144 -39.17883 -37.54757 -35.44255 -34.80937 -32.02642 -31.65587 -31.09981 -28.34678 -27.03759 -25.28109 -24.01182 -22.77561 -22.55987 -21.13298 -20.59008 -18.95862 -18.15429 -17.20151 -16.75546 -16.37523 -16.00275 -15.93660 -15.63372 -15.27504 -14.98415 -14.67485 -14.33532 -14.14759 -13.89947 -13.40450 -13.33602 -13.12215 -12.96135 -12.82721 -12.70186 -12.42962 -12.32222 -12.07502 -12.06059 -11.62676 -11.37639 -11.28877 -11.22546 -10.99282 -10.92611 -10.77289 -9.21308 -9.16516 -8.95361 -8.53908 -6.19656 1.04237 1.16539 1.39862 1.49683 1.58206 2.25103 2.82184 3.19318 3.35838 3.82060 3.89278 3.94598 4.14462 4.31177 4.36712 4.39802 4.50632 4.52140 4.58555 4.63629 4.67261 4.73970 4.76558 4.83068 4.90494 5.01165 5.04797 5.14229 5.14700 5.24413 5.27527 5.32899 5.43525 5.51124 5.59326 5.83430 6.07382 6.23226 6.27858 6.37557 6.45302 6.52998 6.83142 6.95846 7.10282 7.18071 8.42502 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.006149 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.071783 B = 4552.334912 C = 5836.290146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.470 4.470 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.194 4.194 11 C -0.115 4.115 12 C -0.244 4.244 13 C -0.090 4.090 14 C -0.195 4.195 15 C 0.134 3.866 16 N -0.538 5.538 17 C 0.056 3.944 18 C -0.098 4.098 19 C -0.084 4.084 20 C 0.085 3.915 21 O -0.591 6.591 22 C -0.102 4.102 23 C 0.062 3.938 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.395 0.605 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 -5.861 2.214 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.100 3.900 10 C -0.213 4.213 11 C -0.133 4.133 12 C -0.264 4.264 13 C -0.109 4.109 14 C -0.196 4.196 15 C 0.007 3.993 16 N -0.263 5.263 17 C -0.072 4.072 18 C -0.136 4.136 19 C -0.102 4.102 20 C 0.008 3.992 21 O -0.399 6.399 22 C -0.140 4.140 23 C -0.066 4.066 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.245 0.755 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 12.571 -5.396 2.000 13.825 hybrid contribution 0.107 0.332 -0.075 0.357 sum 12.677 -5.064 1.925 13.786 Atomic orbital electron populations 1.69902 1.08870 1.30039 1.36961 1.26704 0.95319 1.04248 0.91761 0.85420 0.78843 0.76554 0.79896 1.18516 1.19719 1.18881 1.19810 0.98010 0.91388 1.40745 0.89699 1.17692 0.90929 0.92795 0.88630 1.21316 1.00574 0.96689 1.02743 1.20920 0.98997 0.93358 1.00048 1.20657 1.01656 0.96653 1.07397 1.20674 0.95876 0.96384 0.97937 1.19798 1.00669 0.93279 1.05903 1.20444 0.87457 0.98284 0.93074 1.61845 1.01623 1.40017 1.22785 1.22096 0.90374 0.99910 0.94805 1.21480 0.96150 0.98006 0.97936 1.21138 0.93604 0.98587 0.96897 1.22166 0.84051 1.00305 0.92694 1.86427 1.18138 1.95802 1.39535 1.21506 0.92665 1.02391 0.97402 1.21976 0.98773 0.90297 0.95517 0.90641 0.88658 0.87926 0.86986 0.87373 0.92365 0.95615 0.95118 0.91692 0.90793 0.92487 0.91230 0.93363 0.92112 0.75503 0.92151 0.89747 0.91942 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.38 10.97 21.83 0.24 -44.14 16 2 C 0.03 1.71 5.16 85.26 0.44 2.15 16 3 Si 0.97 39.54 29.59 68.60 2.03 41.57 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.47 -25.12 8.18 23.46 0.19 -24.92 16 8 H 0.08 4.46 6.85 -2.91 -0.02 4.44 16 9 C 0.10 5.47 5.56 -21.29 -0.12 5.36 16 10 C -0.19 -10.42 8.68 22.73 0.20 -10.22 16 11 C -0.11 -5.47 10.02 22.22 0.22 -5.25 16 12 C -0.24 -10.71 10.05 22.46 0.23 -10.49 16 13 C -0.09 -3.91 8.57 22.22 0.19 -3.72 16 14 C -0.19 -9.19 4.63 -19.41 -0.09 -9.28 16 15 C 0.13 5.53 4.29 85.56 0.37 5.89 16 16 N -0.54 -19.89 4.38 -900.95 -3.95 -23.83 16 17 C 0.06 1.76 5.46 86.32 0.47 2.23 16 18 C -0.10 -2.71 5.25 30.64 0.16 -2.55 16 19 C -0.08 -2.03 2.49 -10.72 -0.03 -2.06 16 20 C 0.09 1.67 6.43 71.98 0.46 2.13 16 21 O -0.59 -11.47 13.26 -148.98 -1.98 -13.45 16 22 C -0.10 -2.70 5.38 30.64 0.16 -2.54 16 23 C 0.06 2.03 5.26 86.32 0.45 2.48 16 24 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 25 H 0.10 5.41 6.21 -2.91 -0.02 5.39 16 26 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 28 H 0.11 4.08 8.03 -2.91 -0.02 4.05 16 29 H 0.06 2.57 7.19 -2.39 -0.02 2.55 16 30 H 0.03 0.98 7.98 -2.39 -0.02 0.96 16 31 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 2.11 8.01 -2.39 -0.02 2.09 16 33 H 0.07 1.93 7.90 -2.39 -0.02 1.91 16 34 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.40 3.84 9.12 -74.06 -0.68 3.17 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.31 6.32 -2.39 -0.02 2.30 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -60.92 332.10 -0.02 -60.94 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.32 Total: 29.70 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.31 Total: -50.78 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -3.71 Total: -67.97 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.98 Total: -13.45 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -60.92 -0.02 -60.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235517004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.197 kcal (2) G-P(sol) polarization free energy of solvation -60.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds