Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.94596 * 2 1 4 4 C 1.38118 * 120.05789 * 180.27698 * 3 2 1 5 5 C 1.38757 * 119.94339 * 359.74782 * 4 3 2 6 6 O 1.35899 * 120.05580 * 179.97438 * 5 4 3 7 7 C 1.38710 * 119.88954 * 359.97438 * 5 4 3 8 8 C 1.38173 * 119.94474 * 0.02562 * 7 5 4 9 9 C 1.50695 * 119.97215 * 179.97438 * 8 7 5 10 10 N 1.46901 * 109.47019 * 106.11302 * 9 8 7 11 11 C 1.46850 * 110.99615 * 184.04371 * 10 9 8 12 12 C 1.53042 * 109.51098 * 185.84550 * 11 10 9 13 13 C 1.53120 * 109.27617 * 300.80012 * 12 11 10 14 14 C 1.50702 * 109.57485 * 177.60598 * 13 12 11 15 15 H 1.07999 * 119.99937 * 240.30194 * 14 13 12 16 16 C 1.37873 * 119.99707 * 60.29257 * 14 13 12 17 17 N 1.31512 * 120.00376 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99599 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47360 * 59.99830 * 18 16 14 20 20 H 1.48495 * 109.46846 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46628 * 300.00078 * 18 16 14 22 22 C 1.53118 * 109.15001 * 57.67321 * 13 12 11 23 23 C 1.46847 * 111.00084 * 308.24902 * 10 9 8 24 24 H 1.09001 * 109.47277 * 274.82509 * 1 2 3 25 25 H 1.08999 * 109.47434 * 34.82251 * 1 2 3 26 26 H 1.09006 * 109.47263 * 154.82478 * 1 2 3 27 27 H 1.07997 * 119.96808 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.03193 * 179.72259 * 4 3 2 29 29 H 0.96696 * 114.00042 * 270.01621 * 6 5 4 30 30 H 1.07996 * 120.03197 * 179.97438 * 7 5 4 31 31 H 1.09002 * 109.47453 * 346.10982 * 9 8 7 32 32 H 1.09007 * 109.46887 * 226.10948 * 9 8 7 33 33 H 1.09005 * 109.46099 * 305.85078 * 11 10 9 34 34 H 1.08998 * 109.46394 * 65.83042 * 11 10 9 35 35 H 1.08996 * 109.50602 * 60.75663 * 12 11 10 36 36 H 1.08999 * 109.49898 * 180.87072 * 12 11 10 37 37 H 1.09000 * 109.53123 * 297.76801 * 13 12 11 38 38 H 0.97008 * 119.99722 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.50185 * 182.39510 * 22 13 12 40 40 H 1.08998 * 109.53392 * 62.30118 * 22 13 12 41 41 H 1.09006 * 109.45853 * 294.18352 * 23 10 9 42 42 H 1.09000 * 109.46038 * 54.15466 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 -0.0058 5 6 4.2734 0.0000 -0.0063 6 8 5.6323 0.0000 -0.0125 7 6 3.5787 -1.2006 -0.0005 8 6 2.1970 -1.1979 0.0053 9 6 1.4416 -2.5019 0.0111 10 7 0.8692 -2.7303 1.3445 11 6 0.2060 -4.0386 1.4154 12 6 -0.5012 -4.1807 2.7651 13 6 0.5276 -4.0477 3.8913 14 6 -0.1701 -4.1280 5.2247 15 1 -0.1134 -3.2990 5.9146 16 6 -0.8810 -5.2596 5.5637 17 7 -0.9498 -6.2692 4.7238 18 14 -1.7465 -5.3587 7.2163 19 1 -2.7444 -4.2640 7.3189 20 1 -2.4343 -6.6692 7.3369 21 1 -0.7478 -5.2220 8.3069 22 6 1.2379 -2.6971 3.7659 23 6 1.8946 -2.5977 2.3872 24 1 -0.3634 0.0864 1.0240 25 1 -0.3634 0.8436 -0.5868 26 1 -0.3634 -0.9301 -0.4372 27 1 1.6559 2.1328 0.0004 28 1 4.1171 2.1370 -0.0103 29 1 6.0216 -0.0017 -0.8977 30 1 4.1173 -2.1367 -0.0013 31 1 2.1217 -3.3169 -0.2369 32 1 0.6399 -2.4606 -0.7263 33 1 -0.5260 -4.1187 0.6116 34 1 0.9493 -4.8288 1.3097 35 1 -1.2541 -3.3990 2.8656 36 1 -0.9804 -5.1580 2.8237 37 1 1.2588 -4.8524 3.8139 38 1 -1.4497 -7.0655 4.9626 39 1 2.0014 -2.6142 4.5395 40 1 0.5128 -1.8917 3.8825 41 1 2.6300 -3.3947 2.2768 42 1 2.3891 -1.6312 2.2894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238099927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = -47.449533 kcal Electronic energy + Delta-G solvation = -21595.794374 eV Core-core repulsion = 18539.263040 eV Total energy + Delta-G solvation = -3056.531335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10918 -39.61427 -37.93729 -35.77941 -33.70167 -32.62276 -32.05326 -31.18484 -28.37553 -27.12081 -25.95992 -23.83336 -23.30153 -22.92633 -21.57640 -20.33758 -18.86510 -18.44269 -17.14760 -16.85207 -16.60134 -16.37260 -16.06630 -15.60762 -15.11756 -14.80904 -14.60354 -14.42026 -14.24443 -14.10123 -13.78420 -13.36118 -13.09918 -12.99127 -12.83225 -12.65761 -12.48127 -12.36851 -12.30463 -12.10158 -11.95358 -11.87220 -11.37570 -11.28314 -10.79594 -10.66750 -10.36842 -9.79047 -9.31099 -9.13234 -8.07120 -6.20435 0.32446 0.38452 1.42002 1.43194 1.50869 2.44577 2.63476 3.11698 3.19804 3.37432 3.78417 3.94500 4.15057 4.21419 4.23989 4.32238 4.34564 4.43735 4.53590 4.61432 4.70183 4.76090 4.88162 4.90454 4.93668 4.96166 5.00853 5.08645 5.13109 5.22763 5.33085 5.40028 5.44354 5.48896 5.56298 5.63316 5.78537 5.96995 6.00905 6.03737 6.29494 6.30811 6.41852 6.89485 6.90171 7.47134 8.97298 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.004067 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.684066 B = 6882.430422 C = 7033.013007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.078 4.078 3 C -0.109 4.109 4 C -0.146 4.146 5 C 0.088 3.912 6 O -0.511 6.511 7 C -0.149 4.149 8 C -0.073 4.073 9 C 0.092 3.908 10 N -0.524 5.524 11 C 0.068 3.932 12 C -0.092 4.092 13 C 0.046 3.954 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.952 3.048 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.097 4.097 23 C 0.074 3.926 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.407 0.593 30 H 0.121 0.879 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.014 0.986 35 H 0.033 0.967 36 H 0.062 0.938 37 H -0.015 1.015 38 H 0.260 0.740 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.013 0.987 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.734 13.297 -14.594 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.165 4.165 5 C 0.044 3.956 6 O -0.324 6.324 7 C -0.168 4.168 8 C -0.073 4.073 9 C -0.034 4.034 10 N -0.249 5.249 11 C -0.060 4.060 12 C -0.131 4.131 13 C 0.027 3.973 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.135 4.135 23 C -0.054 4.054 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.266 0.734 30 H 0.139 0.861 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.003 0.997 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.239 13.458 -13.929 20.349 hybrid contribution 0.420 -1.251 0.500 1.411 sum 6.659 12.207 -13.429 19.331 Atomic orbital electron populations 1.20734 0.89980 1.03059 1.02380 1.20010 0.97227 0.92218 0.98445 1.21193 0.93616 0.98269 0.99557 1.21604 0.94787 0.98042 1.02027 1.18493 0.83134 0.92345 1.01659 1.84792 1.15836 1.96494 1.35276 1.21397 0.93992 0.98263 1.03146 1.19533 0.92676 0.94930 1.00173 1.21111 0.97698 0.93166 0.91457 1.62061 1.29238 1.31014 1.02606 1.22074 0.97030 0.88031 0.98831 1.21393 0.98166 1.00753 0.92767 1.18642 0.93206 0.91569 0.93872 1.21539 1.31986 1.01300 1.02478 0.93319 1.25710 0.97078 0.95369 1.00240 1.70005 1.42676 1.06047 1.36899 0.85705 0.78808 0.77287 0.80405 1.19618 1.20817 1.19932 1.21523 0.98539 0.98701 0.94766 1.21933 0.92277 0.99416 0.91810 0.91832 0.90278 0.91383 0.83405 0.83778 0.73419 0.86071 0.94584 0.88270 0.90145 0.96803 0.94770 0.91918 0.99675 0.93057 0.93647 0.93009 0.96849 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.53 71.23 0.68 -1.59 16 2 C -0.08 -1.84 5.88 -19.85 -0.12 -1.96 16 3 C -0.11 -2.19 9.71 22.25 0.22 -1.97 16 4 C -0.15 -2.95 9.99 22.37 0.22 -2.73 16 5 C 0.09 2.01 6.70 22.51 0.15 2.16 16 6 O -0.51 -10.29 13.50 -92.41 -1.25 -11.54 16 7 C -0.15 -3.73 8.99 22.37 0.20 -3.53 16 8 C -0.07 -1.87 3.72 -19.88 -0.07 -1.94 16 9 C 0.09 2.53 4.50 85.56 0.38 2.92 16 10 N -0.52 -18.00 4.59 -900.91 -4.14 -22.13 16 11 C 0.07 2.61 5.46 86.33 0.47 3.08 16 12 C -0.09 -4.45 5.12 30.65 0.16 -4.29 16 13 C 0.05 2.37 2.16 -11.46 -0.02 2.35 16 14 C -0.53 -30.45 8.56 25.60 0.22 -30.23 16 15 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 16 C 0.01 0.82 5.31 84.65 0.45 1.27 16 17 N -0.92 -53.60 11.38 21.45 0.24 -53.36 16 18 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.10 -4.31 5.32 30.64 0.16 -4.14 16 23 C 0.07 2.76 5.08 86.32 0.44 3.20 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 26 H 0.07 1.51 6.09 -2.38 -0.01 1.49 16 27 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.41 3.87 9.06 -74.06 -0.67 3.20 16 30 H 0.12 3.00 7.99 -2.91 -0.02 2.98 16 31 H 0.04 0.98 7.93 -2.39 -0.02 0.96 16 32 H 0.10 2.39 6.71 -2.38 -0.02 2.37 16 33 H 0.08 2.70 8.12 -2.38 -0.02 2.68 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 3.38 6.18 -2.39 -0.01 3.37 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 39 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.07 2.57 6.27 -2.39 -0.01 2.56 16 Total: -1.00 -64.92 332.01 0.75 -64.17 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.33 Total: 13.86 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.54 Total: -37.42 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -3.89 Total: -75.49 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.25 Total: -11.54 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.92 0.75 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238099927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.717 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds