Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38289 * 119.94752 * 2 1 4 4 C 1.38125 * 120.05366 * 179.74641 * 3 2 1 5 5 C 1.38753 * 119.94393 * 0.50545 * 4 3 2 6 6 O 1.35896 * 120.05224 * 179.74490 * 5 4 3 7 7 C 1.38712 * 119.88817 * 359.47231 * 5 4 3 8 8 C 1.38167 * 119.94340 * 0.27511 * 7 5 4 9 9 C 1.50703 * 119.96795 * 179.97438 * 8 7 5 10 10 N 1.46903 * 109.46969 * 276.46817 * 9 8 7 11 11 C 1.46844 * 110.99979 * 75.80080 * 10 9 8 12 12 C 1.53047 * 109.52100 * 174.16217 * 11 10 9 13 13 C 1.53116 * 109.27766 * 59.17744 * 12 11 10 14 14 C 1.53110 * 109.16315 * 302.34649 * 13 12 11 15 15 H 1.09007 * 109.50572 * 297.71183 * 14 13 12 16 16 C 1.50702 * 109.50709 * 177.63946 * 14 13 12 17 17 H 1.08001 * 119.99840 * 266.27432 * 16 14 13 18 18 C 1.37876 * 120.00187 * 86.26077 * 16 14 13 19 19 N 1.31519 * 119.99905 * 185.31689 * 18 16 14 20 20 Si 1.86798 * 120.00082 * 5.32492 * 18 16 14 21 21 H 1.48499 * 109.47295 * 94.12009 * 20 18 16 22 22 H 1.48497 * 109.47205 * 214.11905 * 20 18 16 23 23 H 1.48502 * 109.47186 * 334.11787 * 20 18 16 24 24 C 1.46852 * 110.99879 * 311.58828 * 10 9 8 25 25 H 1.09003 * 109.47158 * 276.25784 * 1 2 3 26 26 H 1.08995 * 109.46835 * 36.25502 * 1 2 3 27 27 H 1.09001 * 109.47382 * 156.25874 * 1 2 3 28 28 H 1.07999 * 119.96937 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02501 * 180.27665 * 4 3 2 30 30 H 0.96701 * 114.00171 * 269.72509 * 6 5 4 31 31 H 1.08006 * 120.02301 * 180.29356 * 7 5 4 32 32 H 1.08996 * 109.47150 * 36.46605 * 9 8 7 33 33 H 1.09001 * 109.46849 * 156.46853 * 9 8 7 34 34 H 1.09000 * 109.46421 * 294.17039 * 11 10 9 35 35 H 1.08999 * 109.46171 * 54.14624 * 11 10 9 36 36 H 1.09004 * 109.50092 * 179.12486 * 12 11 10 37 37 H 1.09006 * 109.49661 * 299.23751 * 12 11 10 38 38 H 1.09001 * 109.52204 * 62.25295 * 13 12 11 39 39 H 1.09001 * 109.51826 * 182.37597 * 13 12 11 40 40 H 0.96996 * 119.99642 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.46422 * 305.85581 * 24 10 9 42 42 H 1.09006 * 109.46111 * 65.83068 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5786 1.2008 0.0053 5 6 4.2734 -0.0002 0.0000 6 8 5.6324 -0.0002 0.0000 7 6 3.5786 -1.2007 0.0005 8 6 2.1970 -1.1979 0.0005 9 6 1.4415 -2.5020 0.0004 10 7 1.3311 -3.0038 -1.3758 11 6 2.6041 -3.5775 -1.8305 12 6 2.4134 -4.2185 -3.2071 13 6 1.9287 -3.1556 -4.1969 14 6 0.6273 -2.5398 -3.6758 15 1 -0.1409 -3.3107 -3.6140 16 6 0.1738 -1.4520 -4.6150 17 1 0.4544 -0.4259 -4.4285 18 6 -0.5991 -1.7667 -5.7126 19 7 -0.9073 -0.8355 -6.5886 20 14 -1.2086 -3.5157 -5.9552 21 1 -2.5703 -3.6500 -5.3782 22 1 -1.2530 -3.8276 -7.4063 23 1 -0.2870 -4.4601 -5.2739 24 6 0.8696 -1.9475 -2.2857 25 1 -0.3633 0.1120 1.0216 26 1 -0.3633 0.8287 -0.6077 27 1 -0.3634 -0.9407 -0.4137 28 1 1.6560 2.1328 -0.0004 29 1 4.1172 2.1369 0.0098 30 1 6.0257 -0.0006 -0.8835 31 1 4.1173 -2.1369 0.0012 32 1 1.9745 -3.2306 0.6112 33 1 0.4441 -2.3440 0.4107 34 1 3.3542 -2.7896 -1.8976 35 1 2.9354 -4.3348 -1.1200 36 1 3.3621 -4.6306 -3.5511 37 1 1.6734 -5.0158 -3.1378 38 1 2.6857 -2.3776 -4.2957 39 1 1.7512 -3.6166 -5.1685 40 1 -1.4513 -1.0568 -7.3605 41 1 -0.0587 -1.5210 -1.9058 42 1 1.6279 -1.1672 -2.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238107584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = -23.560916 kcal Electronic energy + Delta-G solvation = -22216.983841 eV Core-core repulsion = 19161.488394 eV Total energy + Delta-G solvation = -3055.495447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26085 -38.35957 -36.79859 -33.99407 -32.44013 -31.76308 -30.44779 -30.16431 -26.75334 -25.67448 -25.00064 -22.84546 -21.80349 -21.24414 -20.55955 -18.77948 -17.89828 -16.80342 -16.01617 -15.75892 -15.46224 -15.07310 -14.42423 -14.12823 -13.84898 -13.62320 -13.46151 -13.32790 -12.82175 -12.67897 -12.52656 -12.49424 -11.85464 -11.66056 -11.50523 -11.41072 -11.08928 -10.97358 -10.94463 -10.57318 -10.47294 -10.13335 -9.77958 -9.51487 -9.27621 -8.92065 -8.75229 -8.48149 -8.25246 -7.81427 -6.05896 -4.04562 1.30099 1.40333 3.31324 3.40427 3.45472 3.62215 4.24462 4.45648 4.49712 4.87699 4.90921 5.06451 5.24125 5.27354 5.32042 5.47003 5.57266 5.59945 5.75061 5.78964 5.85197 5.88941 5.92380 6.03445 6.12473 6.20350 6.21530 6.38856 6.40127 6.44237 6.48158 6.54550 6.69067 6.78270 6.85847 6.90901 6.93565 7.32261 7.48011 7.60204 7.62102 7.65207 7.88946 8.55353 8.99172 9.58327 11.07331 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.005834 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.928234 B = 4798.366831 C = 5155.271237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.105 4.105 4 C -0.144 4.144 5 C 0.092 3.908 6 O -0.503 6.503 7 C -0.133 4.133 8 C -0.096 4.096 9 C 0.087 3.913 10 N -0.530 5.530 11 C 0.057 3.943 12 C -0.120 4.120 13 C -0.113 4.113 14 C 0.019 3.981 15 H 0.037 0.963 16 C -0.510 4.510 17 H 0.070 0.930 18 C 0.072 3.928 19 N -0.902 5.902 20 Si 0.874 3.126 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.257 1.257 24 C 0.068 3.932 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.388 0.612 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.516 -0.922 13.474 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.163 4.163 5 C 0.048 3.952 6 O -0.313 6.313 7 C -0.152 4.152 8 C -0.098 4.098 9 C -0.041 4.041 10 N -0.252 5.252 11 C -0.071 4.071 12 C -0.158 4.158 13 C -0.151 4.151 14 C 0.000 4.000 15 H 0.055 0.945 16 C -0.549 4.549 17 H 0.088 0.912 18 C -0.129 4.129 19 N -0.540 5.540 20 Si 0.701 3.299 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.182 1.182 24 C -0.058 4.058 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.243 0.757 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.984 -1.288 13.893 15.603 hybrid contribution 0.506 -0.066 -0.887 1.023 sum 7.490 -1.353 13.007 15.070 Atomic orbital electron populations 1.21115 0.90926 1.04522 1.01975 1.19840 0.96444 0.92340 0.98763 1.20908 0.93439 0.97837 1.00083 1.21329 0.94608 0.97562 1.02802 1.18403 0.82599 0.92383 1.01811 1.84787 1.16400 1.96567 1.33539 1.21264 0.93958 0.97603 1.02385 1.20450 0.93413 0.96671 0.99291 1.21355 0.99718 0.90824 0.92207 1.62492 1.28144 1.33528 1.01023 1.22105 0.90562 0.97587 0.96856 1.21684 1.00093 0.99258 0.94790 1.21900 0.99609 0.96277 0.97313 1.19176 0.93408 0.96163 0.91254 0.94489 1.20954 1.31856 0.94384 1.07662 0.91223 1.25013 0.95655 0.96855 0.95417 1.69924 1.38326 1.33373 1.12401 0.86904 0.79734 0.86222 0.77053 1.20471 1.21719 1.18153 1.22380 0.98851 0.91257 0.93312 0.91442 0.91026 0.89736 0.85710 0.85819 0.75685 0.85857 0.90636 0.89538 0.95063 0.92139 0.93037 0.92009 0.93370 0.93100 0.92783 0.90896 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.74 36.01 0.31 -1.36 16 2 C -0.07 -1.04 5.03 -104.60 -0.53 -1.57 16 3 C -0.10 -1.41 9.72 -39.60 -0.38 -1.79 16 4 C -0.14 -1.92 9.99 -39.43 -0.39 -2.31 16 5 C 0.09 1.27 6.70 -39.22 -0.26 1.01 16 6 O -0.50 -6.17 13.50 -19.41 -0.26 -6.43 16 7 C -0.13 -1.88 8.18 -39.43 -0.32 -2.20 16 8 C -0.10 -1.39 3.78 -104.64 -0.40 -1.78 16 9 C 0.09 1.22 5.28 -4.97 -0.03 1.19 16 10 N -0.53 -8.95 4.86 -236.11 -1.15 -10.10 16 11 C 0.06 0.90 4.90 -3.83 -0.02 0.88 16 12 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 13 C -0.11 -2.39 4.99 -26.61 -0.13 -2.53 16 14 C 0.02 0.45 1.79 -91.70 -0.16 0.28 16 15 H 0.04 0.89 5.65 -51.92 -0.29 0.60 16 16 C -0.51 -14.06 8.87 -34.44 -0.31 -14.36 16 17 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.87 21.46 26.46 -169.99 -4.50 16.96 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.26 -6.04 5.93 56.52 0.34 -5.70 16 24 C 0.07 1.36 3.46 -3.83 -0.01 1.35 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.08 1.19 3.82 -51.93 -0.20 0.99 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.39 3.12 9.06 45.56 0.41 3.54 16 31 H 0.12 1.62 7.47 -52.48 -0.39 1.23 16 32 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 33 H 0.09 1.14 6.20 -51.93 -0.32 0.82 16 34 H 0.03 0.50 6.29 -51.93 -0.33 0.18 16 35 H 0.06 0.83 7.96 -51.93 -0.41 0.42 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.13 6.88 -51.93 -0.36 0.77 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 1.45 5.35 -51.93 -0.28 1.17 16 42 H 0.03 0.62 6.74 -51.93 -0.35 0.27 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -31.15 318.37 -8.74 -39.88 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.51 Total: 4.97 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.89 Total: -23.49 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.37 Total: -36.69 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.26 Total: -6.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.50 Total: 16.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.15 -8.74 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238107584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.323 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds