Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38289 * 119.94752 * 2 1 4 4 C 1.38125 * 120.05366 * 179.74641 * 3 2 1 5 5 C 1.38753 * 119.94393 * 0.50545 * 4 3 2 6 6 O 1.35896 * 120.05224 * 179.74490 * 5 4 3 7 7 C 1.38712 * 119.88817 * 359.47231 * 5 4 3 8 8 C 1.38167 * 119.94340 * 0.27511 * 7 5 4 9 9 C 1.50703 * 119.96795 * 179.97438 * 8 7 5 10 10 N 1.46903 * 109.46969 * 276.46817 * 9 8 7 11 11 C 1.46844 * 110.99979 * 75.80080 * 10 9 8 12 12 C 1.53047 * 109.52100 * 174.16217 * 11 10 9 13 13 C 1.53116 * 109.27766 * 59.17744 * 12 11 10 14 14 C 1.53110 * 109.16315 * 302.34649 * 13 12 11 15 15 H 1.09007 * 109.50572 * 297.71183 * 14 13 12 16 16 C 1.50702 * 109.50709 * 177.63946 * 14 13 12 17 17 H 1.08001 * 119.99840 * 266.27432 * 16 14 13 18 18 C 1.37876 * 120.00187 * 86.26077 * 16 14 13 19 19 N 1.31519 * 119.99905 * 185.31689 * 18 16 14 20 20 Si 1.86798 * 120.00082 * 5.32492 * 18 16 14 21 21 H 1.48499 * 109.47295 * 94.12009 * 20 18 16 22 22 H 1.48497 * 109.47205 * 214.11905 * 20 18 16 23 23 H 1.48502 * 109.47186 * 334.11787 * 20 18 16 24 24 C 1.46852 * 110.99879 * 311.58828 * 10 9 8 25 25 H 1.09003 * 109.47158 * 276.25784 * 1 2 3 26 26 H 1.08995 * 109.46835 * 36.25502 * 1 2 3 27 27 H 1.09001 * 109.47382 * 156.25874 * 1 2 3 28 28 H 1.07999 * 119.96937 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.02501 * 180.27665 * 4 3 2 30 30 H 0.96701 * 114.00171 * 269.72509 * 6 5 4 31 31 H 1.08006 * 120.02301 * 180.29356 * 7 5 4 32 32 H 1.08996 * 109.47150 * 36.46605 * 9 8 7 33 33 H 1.09001 * 109.46849 * 156.46853 * 9 8 7 34 34 H 1.09000 * 109.46421 * 294.17039 * 11 10 9 35 35 H 1.08999 * 109.46171 * 54.14624 * 11 10 9 36 36 H 1.09004 * 109.50092 * 179.12486 * 12 11 10 37 37 H 1.09006 * 109.49661 * 299.23751 * 12 11 10 38 38 H 1.09001 * 109.52204 * 62.25295 * 13 12 11 39 39 H 1.09001 * 109.51826 * 182.37597 * 13 12 11 40 40 H 0.96996 * 119.99642 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.46422 * 305.85581 * 24 10 9 42 42 H 1.09006 * 109.46111 * 65.83068 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5786 1.2008 0.0053 5 6 4.2734 -0.0002 0.0000 6 8 5.6324 -0.0002 0.0000 7 6 3.5786 -1.2007 0.0005 8 6 2.1970 -1.1979 0.0005 9 6 1.4415 -2.5020 0.0004 10 7 1.3311 -3.0038 -1.3758 11 6 2.6041 -3.5775 -1.8305 12 6 2.4134 -4.2185 -3.2071 13 6 1.9287 -3.1556 -4.1969 14 6 0.6273 -2.5398 -3.6758 15 1 -0.1409 -3.3107 -3.6140 16 6 0.1738 -1.4520 -4.6150 17 1 0.4544 -0.4259 -4.4285 18 6 -0.5991 -1.7667 -5.7126 19 7 -0.9073 -0.8355 -6.5886 20 14 -1.2086 -3.5157 -5.9552 21 1 -2.5703 -3.6500 -5.3782 22 1 -1.2530 -3.8276 -7.4063 23 1 -0.2870 -4.4601 -5.2739 24 6 0.8696 -1.9475 -2.2857 25 1 -0.3633 0.1120 1.0216 26 1 -0.3633 0.8287 -0.6077 27 1 -0.3634 -0.9407 -0.4137 28 1 1.6560 2.1328 -0.0004 29 1 4.1172 2.1369 0.0098 30 1 6.0257 -0.0006 -0.8835 31 1 4.1173 -2.1369 0.0012 32 1 1.9745 -3.2306 0.6112 33 1 0.4441 -2.3440 0.4107 34 1 3.3542 -2.7896 -1.8976 35 1 2.9354 -4.3348 -1.1200 36 1 3.3621 -4.6306 -3.5511 37 1 1.6734 -5.0158 -3.1378 38 1 2.6857 -2.3776 -4.2957 39 1 1.7512 -3.6166 -5.1685 40 1 -1.4513 -1.0568 -7.3605 41 1 -0.0587 -1.5210 -1.9058 42 1 1.6279 -1.1672 -2.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238107584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = -45.106804 kcal Electronic energy + Delta-G solvation = -22217.918141 eV Core-core repulsion = 19161.488394 eV Total energy + Delta-G solvation = -3056.429746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37551 -39.62648 -37.90736 -35.59119 -34.16819 -32.94038 -31.85645 -31.59912 -27.93599 -26.89535 -26.78329 -24.16787 -23.03610 -22.70033 -21.75986 -20.32940 -19.10917 -18.72763 -17.11339 -16.97293 -16.78478 -16.17118 -15.86834 -15.76169 -15.21735 -14.99562 -14.63184 -14.59365 -14.45393 -14.24596 -13.86362 -13.74543 -13.23534 -12.92565 -12.82420 -12.73014 -12.59238 -12.48936 -12.26752 -11.98152 -11.74193 -11.69932 -11.50729 -11.25690 -10.97668 -10.78953 -10.59707 -9.82385 -9.32471 -9.14018 -8.26946 -6.29580 0.26482 0.35653 1.36153 1.38616 1.51207 2.38079 2.59317 3.08010 3.18017 3.33327 3.82785 3.87680 4.05966 4.13307 4.16878 4.22847 4.29083 4.38968 4.46631 4.57569 4.69959 4.78391 4.80732 4.84167 4.85564 4.88184 4.92662 5.03219 5.09869 5.10218 5.24511 5.25758 5.30493 5.40308 5.43344 5.58309 5.64898 5.71049 5.79568 5.91534 6.18235 6.28901 6.41361 6.78351 6.80341 7.36537 8.90041 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.005834 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.928234 B = 4798.366831 C = 5155.271237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.152 4.152 5 C 0.085 3.915 6 O -0.508 6.508 7 C -0.141 4.141 8 C -0.106 4.106 9 C 0.089 3.911 10 N -0.532 5.532 11 C 0.056 3.944 12 C -0.114 4.114 13 C -0.112 4.112 14 C 0.017 3.983 15 H 0.033 0.967 16 C -0.511 4.511 17 H 0.026 0.974 18 C 0.014 3.986 19 N -0.952 5.952 20 Si 0.938 3.062 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.237 1.237 24 C 0.087 3.913 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.406 0.594 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.029 0.971 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 -2.981 15.154 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.171 4.171 5 C 0.041 3.959 6 O -0.321 6.321 7 C -0.160 4.160 8 C -0.108 4.108 9 C -0.038 4.038 10 N -0.255 5.255 11 C -0.071 4.071 12 C -0.152 4.152 13 C -0.150 4.150 14 C -0.003 4.003 15 H 0.051 0.949 16 C -0.549 4.549 17 H 0.045 0.955 18 C -0.183 4.183 19 N -0.592 5.592 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.160 1.160 24 C -0.040 4.040 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 7.891 -3.355 15.592 17.794 hybrid contribution 0.311 0.704 -1.385 1.585 sum 8.201 -2.651 14.207 16.617 Atomic orbital electron populations 1.21079 0.90485 1.03470 1.03134 1.20076 0.97025 0.92823 0.99167 1.21166 0.93856 0.98368 0.99899 1.21584 0.94728 0.98324 1.02452 1.18548 0.83260 0.92531 1.01550 1.84736 1.15643 1.96516 1.35209 1.21427 0.93960 0.98212 1.02430 1.20519 0.93715 0.96789 0.99815 1.21427 1.00592 0.91261 0.90550 1.62419 1.29065 1.32264 1.01721 1.22186 0.89933 0.98208 0.96792 1.21639 1.01306 0.97789 0.94448 1.21772 0.98185 0.97143 0.97886 1.19145 0.94202 0.94634 0.92282 0.94924 1.21227 1.31309 0.93842 1.08534 0.95540 1.25864 0.96033 1.01247 0.95124 1.70072 1.39863 1.35885 1.13384 0.85877 0.79626 0.81241 0.77075 1.19730 1.21637 1.16041 1.21973 0.98335 0.91374 0.92352 0.89176 0.91775 0.90934 0.84303 0.84247 0.73617 0.84806 0.88272 0.88856 0.95281 0.88796 0.90332 0.91870 0.94593 0.94491 0.92716 0.91410 0.97069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.74 71.24 0.62 -2.58 16 2 C -0.09 -2.50 5.03 -19.85 -0.10 -2.60 16 3 C -0.11 -3.01 9.72 22.25 0.22 -2.80 16 4 C -0.15 -3.88 9.99 22.37 0.22 -3.66 16 5 C 0.09 2.23 6.70 22.51 0.15 2.38 16 6 O -0.51 -11.51 13.50 -92.38 -1.25 -12.76 16 7 C -0.14 -3.72 8.18 22.37 0.18 -3.53 16 8 C -0.11 -2.90 3.78 -19.88 -0.08 -2.98 16 9 C 0.09 2.27 5.28 85.56 0.45 2.72 16 10 N -0.53 -16.74 4.86 -900.90 -4.38 -21.12 16 11 C 0.06 1.60 4.90 86.33 0.42 2.03 16 12 C -0.11 -3.60 6.09 30.65 0.19 -3.42 16 13 C -0.11 -4.63 4.99 30.67 0.15 -4.48 16 14 C 0.02 0.77 1.79 -11.49 -0.02 0.75 16 15 H 0.03 1.54 5.65 -2.38 -0.01 1.52 16 16 C -0.51 -29.06 8.87 25.60 0.23 -28.83 16 17 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 18 C 0.01 0.81 5.47 84.65 0.46 1.28 16 19 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 20 Si 0.94 44.43 26.46 68.60 1.82 46.25 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.24 -10.38 5.93 99.48 0.59 -9.79 16 24 C 0.09 3.43 3.46 86.32 0.30 3.73 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 27 H 0.07 2.01 3.82 -2.39 -0.01 2.01 16 28 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.41 5.79 9.06 -74.06 -0.67 5.11 16 31 H 0.13 3.15 7.47 -2.91 -0.02 3.12 16 32 H 0.10 2.08 7.86 -2.39 -0.02 2.06 16 33 H 0.09 2.25 6.20 -2.39 -0.01 2.23 16 34 H 0.03 0.85 6.29 -2.39 -0.02 0.84 16 35 H 0.09 2.11 7.96 -2.39 -0.02 2.09 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.60 6.88 -2.39 -0.02 1.58 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.07 2.71 5.35 -2.39 -0.01 2.70 16 42 H 0.01 0.48 6.74 -2.38 -0.02 0.46 16 Total: -1.00 -68.42 318.37 0.13 -68.29 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.24 Total: 20.72 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 3.40 Total: -41.98 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -4.08 Total: -80.51 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.25 Total: -12.76 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.82 Total: 46.25 kcal Total: -68.42 0.13 -68.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238107584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.182 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds