Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38287 * 119.94457 * 2 1 4 4 C 1.38119 * 120.06014 * 179.97438 * 3 2 1 5 5 C 1.38761 * 119.93831 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05014 * 180.02562 * 5 4 3 7 7 C 1.38704 * 119.89115 * 0.02562 * 5 4 3 8 8 C 1.38172 * 119.94475 * 359.70529 * 7 5 4 9 9 C 1.50699 * 119.97625 * 180.31860 * 8 7 5 10 10 N 1.46904 * 109.46968 * 260.25136 * 9 8 7 11 11 C 1.46845 * 110.99909 * 45.78731 * 10 9 8 12 12 C 1.53035 * 109.52107 * 185.83940 * 11 10 9 13 13 C 1.53117 * 109.27940 * 300.82204 * 12 11 10 14 14 C 1.53111 * 109.16185 * 57.65586 * 13 12 11 15 15 H 1.08995 * 109.53783 * 62.30404 * 14 13 12 16 16 C 1.50703 * 109.50584 * 182.40686 * 14 13 12 17 17 H 1.08000 * 120.00192 * 119.79719 * 16 14 13 18 18 C 1.37876 * 119.99642 * 299.80130 * 16 14 13 19 19 N 1.31516 * 120.00415 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99807 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46969 * 60.00233 * 20 18 16 22 22 H 1.48505 * 109.46751 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47004 * 299.99806 * 20 18 16 24 24 C 1.46849 * 110.99856 * 169.99740 * 10 9 8 25 25 H 1.09002 * 109.47152 * 89.99853 * 1 2 3 26 26 H 1.09001 * 109.46980 * 329.99953 * 1 2 3 27 27 H 1.09004 * 109.47113 * 209.99934 * 1 2 3 28 28 H 1.08003 * 119.96963 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.03355 * 180.02562 * 4 3 2 30 30 H 0.96704 * 113.99569 * 90.00554 * 6 5 4 31 31 H 1.07998 * 120.03000 * 179.97438 * 7 5 4 32 32 H 1.09009 * 109.46980 * 20.24861 * 9 8 7 33 33 H 1.08997 * 109.47578 * 140.24472 * 9 8 7 34 34 H 1.09007 * 109.46441 * 305.85567 * 11 10 9 35 35 H 1.09000 * 109.46635 * 65.82692 * 11 10 9 36 36 H 1.09005 * 109.50496 * 180.87985 * 12 11 10 37 37 H 1.09009 * 109.50409 * 60.76305 * 12 11 10 38 38 H 1.08995 * 109.52256 * 297.74452 * 13 12 11 39 39 H 1.09000 * 109.51983 * 177.55898 * 13 12 11 40 40 H 0.96996 * 120.00584 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46307 * 294.17566 * 24 10 9 42 42 H 1.09001 * 109.46114 * 54.14807 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 0.0001 0.0016 7 6 3.5788 -1.2005 -0.0005 8 6 2.1971 -1.1979 0.0045 9 6 1.4416 -2.5018 0.0106 10 7 0.9882 -2.8114 -1.3519 11 6 2.0671 -2.6021 -2.3259 12 6 1.5210 -2.7923 -3.7427 13 6 0.9520 -4.2072 -3.8795 14 6 -0.1359 -4.4157 -2.8226 15 1 -0.9509 -3.7128 -2.9948 16 6 -0.6604 -5.8258 -2.9116 17 1 -0.5783 -6.4872 -2.0618 18 6 -1.2448 -6.2715 -4.0782 19 7 -1.3452 -5.4660 -5.1129 20 14 -1.8942 -8.0195 -4.1888 21 1 -2.9458 -8.2229 -3.1602 22 1 -2.4712 -8.2486 -5.5379 23 1 -0.7825 -8.9762 -3.9563 24 6 0.4582 -4.1786 -1.4323 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.6559 2.1328 0.0004 29 1 4.1172 2.1371 0.0010 30 1 6.0250 -0.0004 0.8854 31 1 4.1174 -2.1366 -0.0010 32 1 2.0951 -3.2987 0.3660 33 1 0.5783 -2.4186 0.6708 34 1 2.4601 -1.5907 -2.2208 35 1 2.8650 -3.3222 -2.1445 36 1 2.3256 -2.6522 -4.4647 37 1 0.7324 -2.0633 -3.9298 38 1 1.7487 -4.9361 -3.7311 39 1 0.5229 -4.3327 -4.8736 40 1 -1.7561 -5.7796 -5.9337 41 1 1.2636 -4.8913 -1.2550 42 1 -0.3175 -4.3122 -0.6783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238107585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = -27.998115 kcal Electronic energy + Delta-G solvation = -21629.097776 eV Core-core repulsion = 18573.409918 eV Total energy + Delta-G solvation = -3055.687858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12830 -38.19999 -36.89827 -33.96073 -32.21444 -31.69051 -30.66620 -29.64452 -26.58132 -25.62127 -24.87476 -22.43771 -21.90644 -21.53836 -20.40027 -18.56445 -17.92309 -16.38147 -16.09831 -15.77628 -15.26743 -14.93521 -14.59723 -14.14201 -13.77865 -13.53092 -13.26775 -13.12982 -12.80292 -12.65557 -12.36453 -11.99861 -11.78652 -11.63356 -11.47031 -11.45721 -11.03694 -10.91255 -10.73339 -10.63560 -10.36999 -10.07861 -9.80541 -9.43479 -9.02621 -8.82346 -8.67537 -8.36382 -8.27129 -7.61574 -5.95131 -4.01489 1.24052 1.31399 3.33442 3.38271 3.40444 3.56854 4.12207 4.43661 4.68755 4.79557 4.86305 5.02606 5.25591 5.32582 5.34909 5.54886 5.68779 5.74702 5.80650 5.80924 5.92163 5.97281 6.07595 6.14458 6.28942 6.31724 6.34900 6.39422 6.44424 6.55157 6.73149 6.78065 6.79606 6.84080 6.99665 7.25524 7.42689 7.57885 7.69514 7.76949 7.83373 8.10926 8.20203 8.50338 9.02364 9.62658 11.10781 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.004069 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.678266 B = 6879.400243 C = 7092.545616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 C -0.109 4.109 4 C -0.146 4.146 5 C 0.091 3.909 6 O -0.500 6.500 7 C -0.135 4.135 8 C -0.058 4.058 9 C 0.089 3.911 10 N -0.528 5.528 11 C 0.062 3.938 12 C -0.117 4.117 13 C -0.110 4.110 14 C 0.057 3.943 15 H 0.034 0.966 16 C -0.516 4.516 17 H 0.052 0.948 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.067 3.933 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.385 0.615 31 H 0.124 0.876 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.090 0.910 40 H 0.260 0.740 41 H 0.019 0.981 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 12.062 11.438 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.165 4.165 5 C 0.047 3.953 6 O -0.310 6.310 7 C -0.154 4.154 8 C -0.059 4.059 9 C -0.039 4.039 10 N -0.252 5.252 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.148 4.148 14 C 0.038 3.962 15 H 0.053 0.947 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.060 4.060 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.240 0.760 31 H 0.142 0.858 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.872 12.366 10.517 18.042 hybrid contribution 0.599 -1.542 0.548 1.742 sum 8.470 10.825 11.065 17.645 Atomic orbital electron populations 1.20795 0.90487 1.02114 1.03328 1.19834 0.96715 0.92020 0.98395 1.20902 0.93404 0.97725 1.00683 1.21327 0.94589 0.97508 1.03064 1.18375 0.82585 0.92269 1.02048 1.84849 1.16368 1.96551 1.33199 1.21326 0.93995 0.97786 1.02316 1.19619 0.92556 0.95212 0.98486 1.21126 0.97755 0.92062 0.92922 1.62176 1.33050 1.27961 1.02044 1.22077 0.91851 0.99188 0.93435 1.21671 0.99377 1.00675 0.93726 1.21648 0.97526 0.91411 1.04233 1.18643 0.93633 0.96261 0.87675 0.94737 1.21112 1.38343 0.97507 0.98486 0.92937 1.24925 0.95805 0.97212 0.95817 1.69883 1.44333 1.35265 1.03195 0.86700 0.79205 0.85235 0.77069 1.20317 1.21327 1.20413 1.22345 0.97256 0.84782 1.01597 0.90151 0.92460 0.90921 0.85768 0.85837 0.75991 0.85837 0.94748 0.89831 0.92027 0.96198 0.93698 0.92186 0.95258 0.89185 0.93018 0.96294 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.61 36.01 0.35 -0.98 16 2 C -0.07 -0.89 5.88 -104.60 -0.62 -1.51 16 3 C -0.11 -1.25 9.69 -39.61 -0.38 -1.64 16 4 C -0.15 -1.67 9.99 -39.43 -0.39 -2.07 16 5 C 0.09 1.13 6.70 -39.22 -0.26 0.87 16 6 O -0.50 -5.54 13.50 -19.43 -0.26 -5.80 16 7 C -0.14 -1.81 8.56 -39.43 -0.34 -2.14 16 8 C -0.06 -0.81 3.69 -104.65 -0.39 -1.20 16 9 C 0.09 1.34 4.79 -4.97 -0.02 1.32 16 10 N -0.53 -9.67 4.80 -236.10 -1.13 -10.81 16 11 C 0.06 1.16 4.80 -3.84 -0.02 1.14 16 12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 13 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 14 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 15 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 16 C -0.52 -14.13 8.56 -34.44 -0.29 -14.42 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.41 11.36 55.43 0.63 -24.78 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.07 1.41 4.65 -3.83 -0.02 1.40 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.89 6.11 -51.93 -0.32 0.57 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.39 2.27 9.06 45.56 0.41 2.69 16 31 H 0.12 1.61 8.04 -52.49 -0.42 1.19 16 32 H 0.03 0.51 7.94 -51.92 -0.41 0.10 16 33 H 0.08 1.18 6.40 -51.93 -0.33 0.84 16 34 H 0.06 1.10 6.02 -51.92 -0.31 0.79 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -29.81 331.23 -9.67 -39.48 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.89 Total: 2.35 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.99 Total: -21.69 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.50 Total: -35.59 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.26 Total: -5.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.81 -9.67 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238107585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.484 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds