Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38287 * 119.94457 * 2 1 4 4 C 1.38119 * 120.06014 * 179.97438 * 3 2 1 5 5 C 1.38761 * 119.93831 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05014 * 180.02562 * 5 4 3 7 7 C 1.38704 * 119.89115 * 0.02562 * 5 4 3 8 8 C 1.38172 * 119.94475 * 359.70529 * 7 5 4 9 9 C 1.50699 * 119.97625 * 180.31860 * 8 7 5 10 10 N 1.46904 * 109.46968 * 260.25136 * 9 8 7 11 11 C 1.46845 * 110.99909 * 45.78731 * 10 9 8 12 12 C 1.53035 * 109.52107 * 185.83940 * 11 10 9 13 13 C 1.53117 * 109.27940 * 300.82204 * 12 11 10 14 14 C 1.53111 * 109.16185 * 57.65586 * 13 12 11 15 15 H 1.08995 * 109.53783 * 62.30404 * 14 13 12 16 16 C 1.50703 * 109.50584 * 182.40686 * 14 13 12 17 17 H 1.08000 * 120.00192 * 119.79719 * 16 14 13 18 18 C 1.37876 * 119.99642 * 299.80130 * 16 14 13 19 19 N 1.31516 * 120.00415 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99807 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46969 * 60.00233 * 20 18 16 22 22 H 1.48505 * 109.46751 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47004 * 299.99806 * 20 18 16 24 24 C 1.46849 * 110.99856 * 169.99740 * 10 9 8 25 25 H 1.09002 * 109.47152 * 89.99853 * 1 2 3 26 26 H 1.09001 * 109.46980 * 329.99953 * 1 2 3 27 27 H 1.09004 * 109.47113 * 209.99934 * 1 2 3 28 28 H 1.08003 * 119.96963 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.03355 * 180.02562 * 4 3 2 30 30 H 0.96704 * 113.99569 * 90.00554 * 6 5 4 31 31 H 1.07998 * 120.03000 * 179.97438 * 7 5 4 32 32 H 1.09009 * 109.46980 * 20.24861 * 9 8 7 33 33 H 1.08997 * 109.47578 * 140.24472 * 9 8 7 34 34 H 1.09007 * 109.46441 * 305.85567 * 11 10 9 35 35 H 1.09000 * 109.46635 * 65.82692 * 11 10 9 36 36 H 1.09005 * 109.50496 * 180.87985 * 12 11 10 37 37 H 1.09009 * 109.50409 * 60.76305 * 12 11 10 38 38 H 1.08995 * 109.52256 * 297.74452 * 13 12 11 39 39 H 1.09000 * 109.51983 * 177.55898 * 13 12 11 40 40 H 0.96996 * 120.00584 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46307 * 294.17566 * 24 10 9 42 42 H 1.09001 * 109.46114 * 54.14807 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6324 0.0001 0.0016 7 6 3.5788 -1.2005 -0.0005 8 6 2.1971 -1.1979 0.0045 9 6 1.4416 -2.5018 0.0106 10 7 0.9882 -2.8114 -1.3519 11 6 2.0671 -2.6021 -2.3259 12 6 1.5210 -2.7923 -3.7427 13 6 0.9520 -4.2072 -3.8795 14 6 -0.1359 -4.4157 -2.8226 15 1 -0.9509 -3.7128 -2.9948 16 6 -0.6604 -5.8258 -2.9116 17 1 -0.5783 -6.4872 -2.0618 18 6 -1.2448 -6.2715 -4.0782 19 7 -1.3452 -5.4660 -5.1129 20 14 -1.8942 -8.0195 -4.1888 21 1 -2.9458 -8.2229 -3.1602 22 1 -2.4712 -8.2486 -5.5379 23 1 -0.7825 -8.9762 -3.9563 24 6 0.4582 -4.1786 -1.4323 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.6559 2.1328 0.0004 29 1 4.1172 2.1371 0.0010 30 1 6.0250 -0.0004 0.8854 31 1 4.1174 -2.1366 -0.0010 32 1 2.0951 -3.2987 0.3660 33 1 0.5783 -2.4186 0.6708 34 1 2.4601 -1.5907 -2.2208 35 1 2.8650 -3.3222 -2.1445 36 1 2.3256 -2.6522 -4.4647 37 1 0.7324 -2.0633 -3.9298 38 1 1.7487 -4.9361 -3.7311 39 1 0.5229 -4.3327 -4.8736 40 1 -1.7561 -5.7796 -5.9337 41 1 1.2636 -4.8913 -1.2550 42 1 -0.3175 -4.3122 -0.6783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238107585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = -46.740698 kcal Electronic energy + Delta-G solvation = -21629.910515 eV Core-core repulsion = 18573.409918 eV Total energy + Delta-G solvation = -3056.500597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15242 -39.60879 -37.94013 -35.65070 -33.87787 -32.65513 -32.06343 -31.37669 -27.70437 -26.94355 -26.66604 -23.83261 -23.30555 -22.91776 -21.54775 -20.34757 -18.89256 -18.36431 -17.09571 -16.92493 -16.59248 -16.39442 -16.04303 -15.58231 -15.07695 -14.89924 -14.59155 -14.43959 -14.27511 -14.05816 -13.79159 -13.48767 -13.24075 -12.86216 -12.79906 -12.64803 -12.61194 -12.46556 -12.38941 -12.04640 -11.83317 -11.72777 -11.42100 -11.29714 -10.86542 -10.66818 -10.37069 -9.79505 -9.33174 -9.07783 -8.06665 -6.20915 0.31185 0.37454 1.42581 1.43756 1.51339 2.43536 2.63145 3.16528 3.20447 3.37451 3.76777 3.93185 4.13424 4.18861 4.19873 4.30545 4.33834 4.41827 4.58140 4.59547 4.67593 4.75677 4.86524 4.87693 4.91670 4.95417 5.00059 5.07036 5.12824 5.17310 5.35789 5.37637 5.42732 5.47694 5.52355 5.63969 5.77814 5.94300 5.97957 6.11912 6.20509 6.31032 6.46149 6.89137 6.91497 7.46953 8.97907 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.004069 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.678266 B = 6879.400243 C = 7092.545616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.081 4.081 3 C -0.106 4.106 4 C -0.145 4.145 5 C 0.090 3.910 6 O -0.510 6.510 7 C -0.147 4.147 8 C -0.072 4.072 9 C 0.092 3.908 10 N -0.532 5.532 11 C 0.073 3.927 12 C -0.110 4.110 13 C -0.102 4.102 14 C 0.055 3.945 15 H 0.000 1.000 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.081 3.919 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.408 0.592 31 H 0.121 0.879 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.018 0.982 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.260 0.740 41 H 0.014 0.986 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 13.106 12.663 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 C -0.124 4.124 4 C -0.163 4.163 5 C 0.046 3.954 6 O -0.323 6.323 7 C -0.167 4.167 8 C -0.073 4.073 9 C -0.035 4.035 10 N -0.256 5.256 11 C -0.054 4.054 12 C -0.148 4.148 13 C -0.140 4.140 14 C 0.036 3.964 15 H 0.018 0.982 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.047 4.047 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.774 13.417 11.774 19.891 hybrid contribution 0.376 -1.794 0.196 1.843 sum 9.151 11.624 11.970 19.030 Atomic orbital electron populations 1.20761 0.90180 1.03034 1.02441 1.20003 0.97105 0.92314 0.98750 1.21194 0.93644 0.98145 0.99431 1.21612 0.94726 0.98073 1.01936 1.18473 0.83167 0.92264 1.01522 1.84788 1.15723 1.96483 1.35343 1.21370 0.93878 0.98302 1.03103 1.19511 0.92779 0.94772 1.00211 1.21128 0.98436 0.93111 0.90810 1.62075 1.33589 1.25859 1.04102 1.21948 0.91553 0.99862 0.92079 1.21583 0.99564 0.97789 0.95855 1.21454 0.96849 0.93612 1.02127 1.18557 0.93007 0.94417 0.90377 0.98226 1.21495 1.38704 0.98714 0.98649 0.92950 1.25710 0.96052 1.01137 0.95482 1.70030 1.44875 1.37005 1.03571 0.85684 0.78745 0.80470 0.77171 1.19529 1.21006 1.19801 1.22022 0.97112 0.86423 0.99107 0.91854 0.90050 0.91600 0.83292 0.83622 0.73385 0.86140 0.94542 0.88906 0.90635 0.96338 0.91912 0.93050 0.96125 0.92353 0.93089 0.96767 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.61 71.24 0.68 -1.74 16 2 C -0.08 -1.94 5.88 -19.85 -0.12 -2.05 16 3 C -0.11 -2.12 9.69 22.25 0.22 -1.91 16 4 C -0.14 -2.86 9.99 22.37 0.22 -2.64 16 5 C 0.09 2.02 6.70 22.51 0.15 2.17 16 6 O -0.51 -10.02 13.50 -92.42 -1.25 -11.26 16 7 C -0.15 -3.70 8.56 22.37 0.19 -3.51 16 8 C -0.07 -1.90 3.69 -19.88 -0.07 -1.98 16 9 C 0.09 2.69 4.79 85.56 0.41 3.10 16 10 N -0.53 -19.35 4.80 -900.90 -4.32 -23.67 16 11 C 0.07 2.67 4.80 86.33 0.41 3.08 16 12 C -0.11 -4.51 6.09 30.65 0.19 -4.32 16 13 C -0.10 -5.06 5.03 30.67 0.15 -4.91 16 14 C 0.06 2.85 2.26 -11.49 -0.03 2.82 16 15 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 16 C -0.54 -30.04 8.56 25.60 0.22 -29.82 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.02 0.84 5.30 84.65 0.45 1.29 16 19 N -0.92 -53.75 11.36 21.45 0.24 -53.51 16 20 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.08 3.44 4.65 86.33 0.40 3.84 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.07 1.54 6.11 -2.38 -0.01 1.53 16 28 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 29 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.41 3.74 9.06 -74.05 -0.67 3.07 16 31 H 0.12 3.01 8.04 -2.91 -0.02 2.99 16 32 H 0.04 1.06 7.94 -2.38 -0.02 1.04 16 33 H 0.09 2.53 6.40 -2.39 -0.02 2.51 16 34 H 0.08 2.58 6.02 -2.38 -0.01 2.57 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 3.25 6.17 -2.39 -0.01 3.24 16 40 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 2.61 8.12 -2.39 -0.02 2.59 16 Total: -1.00 -64.46 331.23 0.52 -63.95 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.33 Total: 15.04 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.48 Total: -36.55 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -4.08 Total: -77.18 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.25 Total: -11.26 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.46 0.52 -63.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238107585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.206 kcal (2) G-P(sol) polarization free energy of solvation -64.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds