Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00205 * 2 1 4 4 C 1.38751 * 120.05980 * 0.29635 * 3 2 1 5 5 C 1.38115 * 119.94808 * 180.20839 * 4 3 2 6 6 C 1.50703 * 119.97354 * 179.79078 * 5 4 3 7 7 C 1.38289 * 120.05582 * 359.51332 * 5 4 3 8 8 C 1.50703 * 119.94609 * 180.25570 * 7 5 4 9 9 C 1.38244 * 120.11028 * 0.23448 * 7 5 4 10 10 C 1.38170 * 120.05645 * 359.97438 * 9 7 5 11 11 C 1.50700 * 120.02708 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46840 * 260.00356 * 11 10 9 13 13 C 1.47484 * 111.00139 * 265.96944 * 12 11 10 14 14 C 1.53508 * 87.93499 * 221.30354 * 13 12 11 15 15 C 1.50699 * 114.34821 * 139.68628 * 14 13 12 16 16 H 1.07999 * 119.99864 * 266.07959 * 15 14 13 17 17 C 1.37881 * 119.99921 * 86.07271 * 15 14 13 18 18 N 1.31513 * 119.99739 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47109 * 90.00062 * 19 17 15 21 21 H 1.48498 * 109.46802 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47412 * 329.99875 * 19 17 15 23 23 C 1.47485 * 110.99602 * 170.00455 * 12 11 10 24 24 H 1.08991 * 109.47674 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47479 * 300.00742 * 1 2 3 26 26 H 1.09009 * 109.46807 * 60.00064 * 1 2 3 27 27 H 1.08012 * 120.02270 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47152 * 269.72266 * 6 5 4 29 29 H 1.09001 * 109.46980 * 149.72366 * 6 5 4 30 30 H 1.09004 * 109.47113 * 29.72347 * 6 5 4 31 31 H 1.08995 * 109.46902 * 90.00054 * 8 7 5 32 32 H 1.08999 * 109.46833 * 209.99962 * 8 7 5 33 33 H 1.09003 * 109.46697 * 329.99892 * 8 7 5 34 34 H 1.07996 * 119.97203 * 180.02562 * 9 7 5 35 35 H 1.08998 * 109.47086 * 20.00309 * 11 10 9 36 36 H 1.09007 * 109.46712 * 140.00656 * 11 10 9 37 37 H 1.09006 * 113.47599 * 336.06822 * 13 12 11 38 38 H 1.08994 * 113.47135 * 106.53145 * 13 12 11 39 39 H 1.09002 * 114.16978 * 272.38145 * 14 13 12 40 40 H 0.97000 * 119.99204 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.47626 * 253.46911 * 23 12 11 42 42 H 1.08997 * 113.48081 * 23.87520 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0062 5 6 1.9210 3.6047 0.0018 6 6 1.1021 4.8698 0.0038 7 6 3.3021 3.6757 0.0015 8 6 3.9863 5.0184 0.0025 9 6 4.0561 2.5170 0.0005 10 6 3.4312 1.2847 0.0006 11 6 4.2538 0.0220 0.0001 12 7 4.3192 -0.5193 -1.3639 13 6 3.2640 -1.5258 -1.5844 14 6 4.3026 -2.3688 -2.3374 15 6 4.2237 -3.8474 -2.0575 16 1 4.8418 -4.2851 -1.2876 17 6 3.3622 -4.6416 -2.7844 18 7 2.6098 -4.1086 -3.7222 19 14 3.2638 -6.4743 -2.4370 20 1 2.2284 -6.7272 -1.4030 21 1 2.9044 -7.1958 -3.6842 22 1 4.5802 -6.9568 -1.9478 23 6 5.3036 -1.6140 -1.4514 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2128 2.3204 0.0106 28 1 0.9043 5.1762 -1.0234 29 1 1.6520 5.6577 0.5185 30 1 0.1577 4.6906 0.5178 31 1 4.1516 5.3411 1.0304 32 1 4.9440 4.9385 -0.5117 33 1 3.3581 5.7467 -0.5105 34 1 5.1345 2.5750 0.0007 35 1 5.2613 0.2446 0.3514 36 1 3.7925 -0.7123 0.6607 37 1 2.9100 -1.9924 -0.6650 38 1 2.4510 -1.1709 -2.2177 39 1 4.3820 -2.1353 -3.3991 40 1 2.0040 -4.6674 -4.2338 41 1 6.2193 -1.3339 -1.9722 42 1 5.4949 -2.1034 -0.4965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238760938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = 12.209283 kcal Electronic energy + Delta-G solvation = -21475.417528 eV Core-core repulsion = 18421.473193 eV Total energy + Delta-G solvation = -3053.944334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25411 -38.55473 -37.67545 -33.75685 -32.40075 -31.66826 -29.60085 -27.72663 -27.24225 -25.85720 -24.63750 -24.42175 -22.24804 -21.64873 -19.88690 -18.48165 -17.29710 -16.64371 -16.18110 -15.57278 -14.99057 -14.67997 -14.24620 -14.11601 -14.03082 -13.93214 -13.78548 -13.34764 -12.85532 -12.76708 -12.25333 -12.07360 -12.02050 -11.71937 -11.67929 -11.49755 -11.16184 -11.15049 -10.94307 -10.66358 -10.49975 -10.43181 -10.12205 -9.60701 -9.21506 -8.82823 -8.49325 -8.35071 -7.85046 -7.66242 -5.98788 -4.02445 1.50875 1.63207 3.31820 3.38582 3.41973 3.57580 3.86635 4.45310 4.79098 4.88682 5.01733 5.14346 5.21973 5.27291 5.30866 5.33387 5.37004 5.51110 5.55814 5.61339 5.62744 5.70050 5.76220 5.81351 5.88461 5.95329 6.05891 6.25499 6.36438 6.42561 6.55901 6.61540 6.69027 6.80485 6.80798 6.91229 7.03904 7.34266 7.36752 7.69203 7.80773 7.99955 8.22864 8.46618 9.00209 9.61502 11.10863 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.004370 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.193069 B = 6405.856186 C = 7035.883430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.300 6.300 3 C 0.139 3.861 4 C -0.209 4.209 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.131 4.131 8 C -0.106 4.106 9 C -0.068 4.068 10 C -0.092 4.092 11 C 0.066 3.934 12 N -0.480 5.480 13 C 0.024 3.976 14 C 0.036 3.964 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.006 4.006 24 H 0.099 0.901 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 15.940 8.920 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.212 6.212 3 C 0.093 3.907 4 C -0.228 4.228 5 C -0.059 4.059 6 C -0.169 4.169 7 C -0.131 4.131 8 C -0.163 4.163 9 C -0.087 4.087 10 C -0.093 4.093 11 C -0.062 4.062 12 N -0.202 5.202 13 C -0.104 4.104 14 C 0.017 3.983 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.135 4.135 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.976 16.306 8.377 18.572 hybrid contribution -0.600 -1.533 0.778 1.821 sum -3.576 14.773 9.155 17.744 Atomic orbital electron populations 1.23007 0.79077 1.03958 1.00552 1.86249 1.20693 1.26218 1.88065 1.18866 0.91877 0.84276 0.95712 1.20994 0.99523 0.91817 1.10466 1.19416 0.93230 0.94299 0.98940 1.20792 0.99032 0.94945 1.02146 1.19554 0.92864 0.95316 1.05417 1.20696 1.00141 0.93812 1.01624 1.20684 0.99400 0.90428 0.98156 1.19173 0.90471 0.95700 1.03992 1.21418 0.97632 0.93541 0.93606 1.68924 1.07367 1.23018 1.20921 1.23939 0.95618 0.91145 0.99730 1.20145 0.89637 0.93326 0.95171 1.21043 1.22821 0.92263 1.19016 0.92528 1.25002 0.95531 0.98331 0.94705 1.69983 1.24754 1.35532 1.22145 0.86645 0.78386 0.85604 0.77659 1.20722 1.21210 1.19854 1.23998 0.96982 0.92291 1.00200 0.88231 0.93341 0.92893 0.85877 0.91270 0.91399 0.91941 0.91872 0.91826 0.91821 0.85741 0.91522 0.93086 0.92635 0.92411 0.92047 0.93010 0.92186 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.28 7.87 -19.42 -0.15 -5.43 16 3 C 0.14 2.36 6.65 -39.22 -0.26 2.10 16 4 C -0.21 -3.01 8.69 -39.44 -0.34 -3.35 16 5 C -0.06 -0.77 5.88 -104.65 -0.62 -1.38 16 6 C -0.11 -1.07 9.19 36.01 0.33 -0.74 16 7 C -0.13 -1.74 5.88 -104.60 -0.62 -2.36 16 8 C -0.11 -1.05 9.19 36.01 0.33 -0.72 16 9 C -0.07 -1.02 9.32 -39.60 -0.37 -1.39 16 10 C -0.09 -1.60 5.48 -104.47 -0.57 -2.17 16 11 C 0.07 1.24 4.71 -4.98 -0.02 1.21 16 12 N -0.48 -10.42 6.32 -246.09 -1.55 -11.97 16 13 C 0.02 0.59 5.72 -7.55 -0.04 0.55 16 14 C 0.04 0.95 3.76 -91.24 -0.34 0.60 16 15 C -0.51 -14.33 8.83 -34.44 -0.30 -14.63 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -26.06 13.26 55.43 0.74 -25.32 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.01 -0.13 7.24 -7.55 -0.05 -0.19 16 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 26 H 0.05 0.65 7.68 -51.92 -0.40 0.25 16 27 H 0.12 1.51 6.30 -52.48 -0.33 1.18 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.55 6.70 -51.93 -0.35 0.21 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.06 0.55 6.69 -51.93 -0.35 0.21 16 34 H 0.12 1.65 8.04 -52.49 -0.42 1.23 16 35 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 36 H 0.05 1.00 7.01 -51.93 -0.36 0.63 16 37 H 0.06 1.38 7.09 -51.93 -0.37 1.01 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.12 7.87 -51.93 -0.41 0.71 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -30.80 338.19 -9.60 -40.40 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.72 Total: 0.19 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -1.99 Total: -19.31 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.82 Total: -37.29 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.15 Total: -5.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.80 -9.60 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238760938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.609 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds