Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00205 * 2 1 4 4 C 1.38751 * 120.05980 * 0.29635 * 3 2 1 5 5 C 1.38115 * 119.94808 * 180.20839 * 4 3 2 6 6 C 1.50703 * 119.97354 * 179.79078 * 5 4 3 7 7 C 1.38289 * 120.05582 * 359.51332 * 5 4 3 8 8 C 1.50703 * 119.94609 * 180.25570 * 7 5 4 9 9 C 1.38244 * 120.11028 * 0.23448 * 7 5 4 10 10 C 1.38170 * 120.05645 * 359.97438 * 9 7 5 11 11 C 1.50700 * 120.02708 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.46840 * 260.00356 * 11 10 9 13 13 C 1.47484 * 111.00139 * 265.96944 * 12 11 10 14 14 C 1.53508 * 87.93499 * 221.30354 * 13 12 11 15 15 C 1.50699 * 114.34821 * 139.68628 * 14 13 12 16 16 H 1.07999 * 119.99864 * 266.07959 * 15 14 13 17 17 C 1.37881 * 119.99921 * 86.07271 * 15 14 13 18 18 N 1.31513 * 119.99739 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47109 * 90.00062 * 19 17 15 21 21 H 1.48498 * 109.46802 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47412 * 329.99875 * 19 17 15 23 23 C 1.47485 * 110.99602 * 170.00455 * 12 11 10 24 24 H 1.08991 * 109.47674 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47479 * 300.00742 * 1 2 3 26 26 H 1.09009 * 109.46807 * 60.00064 * 1 2 3 27 27 H 1.08012 * 120.02270 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47152 * 269.72266 * 6 5 4 29 29 H 1.09001 * 109.46980 * 149.72366 * 6 5 4 30 30 H 1.09004 * 109.47113 * 29.72347 * 6 5 4 31 31 H 1.08995 * 109.46902 * 90.00054 * 8 7 5 32 32 H 1.08999 * 109.46833 * 209.99962 * 8 7 5 33 33 H 1.09003 * 109.46697 * 329.99892 * 8 7 5 34 34 H 1.07996 * 119.97203 * 180.02562 * 9 7 5 35 35 H 1.08998 * 109.47086 * 20.00309 * 11 10 9 36 36 H 1.09007 * 109.46712 * 140.00656 * 11 10 9 37 37 H 1.09006 * 113.47599 * 336.06822 * 13 12 11 38 38 H 1.08994 * 113.47135 * 106.53145 * 13 12 11 39 39 H 1.09002 * 114.16978 * 272.38145 * 14 13 12 40 40 H 0.97000 * 119.99204 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.47626 * 253.46911 * 23 12 11 42 42 H 1.08997 * 113.48081 * 23.87520 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0062 5 6 1.9210 3.6047 0.0018 6 6 1.1021 4.8698 0.0038 7 6 3.3021 3.6757 0.0015 8 6 3.9863 5.0184 0.0025 9 6 4.0561 2.5170 0.0005 10 6 3.4312 1.2847 0.0006 11 6 4.2538 0.0220 0.0001 12 7 4.3192 -0.5193 -1.3639 13 6 3.2640 -1.5258 -1.5844 14 6 4.3026 -2.3688 -2.3374 15 6 4.2237 -3.8474 -2.0575 16 1 4.8418 -4.2851 -1.2876 17 6 3.3622 -4.6416 -2.7844 18 7 2.6098 -4.1086 -3.7222 19 14 3.2638 -6.4743 -2.4370 20 1 2.2284 -6.7272 -1.4030 21 1 2.9044 -7.1958 -3.6842 22 1 4.5802 -6.9568 -1.9478 23 6 5.3036 -1.6140 -1.4514 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2128 2.3204 0.0106 28 1 0.9043 5.1762 -1.0234 29 1 1.6520 5.6577 0.5185 30 1 0.1577 4.6906 0.5178 31 1 4.1516 5.3411 1.0304 32 1 4.9440 4.9385 -0.5117 33 1 3.3581 5.7467 -0.5105 34 1 5.1345 2.5750 0.0007 35 1 5.2613 0.2446 0.3514 36 1 3.7925 -0.7123 0.6607 37 1 2.9100 -1.9924 -0.6650 38 1 2.4510 -1.1709 -2.2177 39 1 4.3820 -2.1353 -3.3991 40 1 2.0040 -4.6674 -4.2338 41 1 6.2193 -1.3339 -1.9722 42 1 5.4949 -2.1034 -0.4965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238760938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = -6.933899 kcal Electronic energy + Delta-G solvation = -21476.247638 eV Core-core repulsion = 18421.473193 eV Total energy + Delta-G solvation = -3054.774445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48544 -40.29790 -38.78553 -35.19389 -34.27600 -32.65059 -31.08753 -28.83120 -28.56513 -27.23538 -26.50953 -25.85439 -23.79927 -22.80167 -21.08721 -20.44675 -18.74505 -18.31369 -17.44444 -16.92488 -16.59115 -16.25075 -15.93398 -15.66025 -15.16154 -14.95006 -14.87835 -14.76651 -14.11237 -13.91040 -13.54968 -13.38515 -13.19974 -13.06885 -12.92959 -12.89543 -12.76837 -12.65664 -12.39953 -12.17538 -12.00665 -11.76201 -11.56821 -11.41046 -11.15328 -10.85286 -10.48493 -9.72546 -9.56209 -8.81739 -8.14135 -6.25707 0.38451 0.52259 1.41986 1.42536 1.53676 2.42550 2.46916 2.73259 3.14727 3.51151 3.77138 3.84958 3.99342 4.15109 4.21738 4.29921 4.33533 4.34444 4.40645 4.50901 4.60736 4.65450 4.71932 4.76445 4.80996 4.83851 4.85639 4.89834 4.91681 4.96930 5.01077 5.19546 5.28093 5.32029 5.39376 5.49297 5.62587 5.64460 5.75186 5.85519 5.99887 6.30645 6.41240 6.56057 6.82976 7.42207 8.95911 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.004370 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.193069 B = 6405.856186 C = 7035.883430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.215 4.215 5 C -0.059 4.059 6 C -0.111 4.111 7 C -0.134 4.134 8 C -0.104 4.104 9 C -0.075 4.075 10 C -0.126 4.126 11 C 0.072 3.928 12 N -0.480 5.480 13 C 0.048 3.952 14 C 0.017 3.983 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.009 3.991 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.076 0.924 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 17.537 10.131 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C 0.068 3.932 4 C -0.234 4.234 5 C -0.060 4.060 6 C -0.167 4.167 7 C -0.134 4.134 8 C -0.161 4.161 9 C -0.093 4.093 10 C -0.127 4.127 11 C -0.056 4.056 12 N -0.202 5.202 13 C -0.081 4.081 14 C -0.002 4.002 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.120 4.120 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.880 17.918 9.600 20.530 hybrid contribution -0.647 -1.912 0.405 2.059 sum -3.528 16.006 10.005 19.203 Atomic orbital electron populations 1.23190 0.77396 1.04566 1.01930 1.86180 1.22728 1.27317 1.88502 1.19152 0.92230 0.84862 0.96937 1.21268 1.00437 0.91579 1.10085 1.19926 0.93771 0.95268 0.97014 1.20873 0.99230 0.93463 1.03161 1.19997 0.93206 0.96344 1.03897 1.20762 1.00296 0.92010 1.02985 1.20917 1.00292 0.90237 0.97867 1.19229 0.90820 0.95782 1.06842 1.21359 0.99070 0.93977 0.91153 1.68853 1.05745 1.21941 1.23636 1.23514 0.94894 0.91414 0.98293 1.20105 0.92605 0.93508 0.94000 1.21362 1.22950 0.93349 1.19182 0.92267 1.25846 0.95019 1.03182 0.94396 1.70118 1.25494 1.37337 1.23182 0.85542 0.78766 0.79658 0.77619 1.20038 1.20780 1.18844 1.23833 0.96805 0.91692 0.99644 0.88125 0.90878 0.92461 0.84126 0.90335 0.89551 0.90756 0.90213 0.91359 0.90265 0.84463 0.89482 0.94572 0.93696 0.95103 0.95478 0.92894 0.90594 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 16 2 O -0.33 -12.16 7.87 -92.42 -0.73 -12.89 16 3 C 0.11 3.91 6.65 22.51 0.15 4.06 16 4 C -0.22 -5.96 8.69 22.36 0.19 -5.77 16 5 C -0.06 -1.42 5.88 -19.88 -0.12 -1.54 16 6 C -0.11 -1.72 9.19 71.24 0.65 -1.07 16 7 C -0.13 -3.26 5.88 -19.85 -0.12 -3.37 16 8 C -0.10 -1.70 9.19 71.24 0.65 -1.04 16 9 C -0.07 -2.14 9.32 22.25 0.21 -1.94 16 10 C -0.13 -4.36 5.48 -19.77 -0.11 -4.47 16 11 C 0.07 2.72 4.71 85.56 0.40 3.12 16 12 N -0.48 -21.22 6.32 -932.49 -5.89 -27.11 16 13 C 0.05 2.45 5.72 83.57 0.48 2.92 16 14 C 0.02 0.92 3.76 -11.20 -0.04 0.88 16 15 C -0.53 -30.22 8.83 25.60 0.23 -30.00 16 16 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 17 C 0.01 0.84 5.46 84.66 0.46 1.30 16 18 N -0.92 -55.76 13.26 21.45 0.28 -55.47 16 19 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.01 0.40 7.24 83.57 0.61 1.00 16 24 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.07 1.53 7.65 -2.39 -0.02 1.51 16 26 H 0.06 1.43 7.68 -2.38 -0.02 1.41 16 27 H 0.14 3.23 6.30 -2.90 -0.02 3.21 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.04 6.70 -2.39 -0.02 1.03 16 30 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.08 1.06 6.69 -2.39 -0.02 1.04 16 34 H 0.14 3.43 8.04 -2.91 -0.02 3.41 16 35 H 0.09 2.84 7.94 -2.39 -0.02 2.82 16 36 H 0.04 1.45 7.01 -2.38 -0.02 1.44 16 37 H 0.04 2.35 7.09 -2.38 -0.02 2.33 16 38 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 40 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.06 2.59 7.87 -2.39 -0.02 2.57 16 Total: -1.00 -68.16 338.19 1.45 -66.71 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.99 Total: 16.69 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.76 Total: -34.17 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -5.61 Total: -82.58 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.73 Total: -12.89 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.16 1.45 -66.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238760938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.779 kcal (2) G-P(sol) polarization free energy of solvation -68.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds