Wall clock time and date at job start Mon Mar 30 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00533 * 2 1 4 4 H 1.48500 * 109.46658 * 270.00041 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99881 * 3 2 1 6 6 H 1.48500 * 109.47253 * 150.00469 * 3 2 1 7 7 C 1.37885 * 119.99190 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99341 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46674 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47041 * 180.02562 * 10 9 7 12 12 C 1.38419 * 120.44219 * 264.97601 * 11 10 9 13 13 C 1.38789 * 118.48594 * 180.02562 * 12 11 10 14 14 C 1.38086 * 119.28490 * 359.97438 * 13 12 11 15 15 N 1.31939 * 120.83564 * 359.72943 * 14 13 12 16 16 C 1.32268 * 121.64437 * 0.55726 * 15 14 13 17 17 O 1.35676 * 119.68259 * 179.71479 * 16 15 14 18 18 C 1.42895 * 117.00073 * 359.72556 * 17 16 15 19 19 C 1.53002 * 109.47308 * 150.00343 * 18 17 16 20 20 C 1.53000 * 109.47233 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47060 * 299.99657 * 20 19 18 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 20 19 23 23 C 1.52997 * 109.47503 * 270.00317 * 18 17 16 24 24 H 0.97001 * 119.99103 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46850 * 60.00670 * 9 7 2 26 26 H 1.08994 * 109.47477 * 299.99903 * 9 7 2 27 27 H 1.08999 * 109.47203 * 60.00037 * 10 9 7 28 28 H 1.09008 * 109.47007 * 300.00072 * 10 9 7 29 29 H 1.08002 * 120.75814 * 0.04270 * 12 11 10 30 30 H 1.07994 * 120.35539 * 180.02562 * 13 12 11 31 31 H 1.08002 * 119.57984 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47333 * 30.00157 * 18 17 16 33 33 H 1.08992 * 109.47063 * 60.00217 * 19 18 17 34 34 H 1.09004 * 109.46733 * 299.99930 * 19 18 17 35 35 H 1.09002 * 109.47398 * 59.99826 * 20 19 18 36 36 H 1.09001 * 109.47194 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 39 39 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 41 41 H 1.09002 * 109.47153 * 299.99957 * 23 18 17 42 42 H 1.09001 * 109.47289 * 60.00040 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5469 1.4399 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0000 10 6 4.0214 -2.6368 0.0001 11 6 5.5283 -2.6370 0.0001 12 6 6.2297 -2.7416 -1.1886 13 6 7.6168 -2.7382 -1.1413 14 6 8.2507 -2.6307 0.0807 15 7 7.5547 -2.5265 1.1968 16 6 6.2321 -2.5316 1.1928 17 8 5.5563 -2.4280 2.3647 18 6 6.3372 -2.3233 3.5568 19 6 5.5700 -1.5071 4.5990 20 6 6.4064 -1.3945 5.8752 21 6 6.6849 -2.7939 6.4276 22 6 7.4519 -3.6102 5.3855 23 6 6.6152 -3.7229 4.1090 24 1 -0.4849 0.8401 0.0004 25 1 3.8751 -0.6800 0.8895 26 1 3.8745 -0.6811 -0.8905 27 1 3.6576 -3.1508 -0.8896 28 1 3.6583 -3.1505 0.8904 29 1 5.7094 -2.8239 -2.1315 30 1 8.1941 -2.8178 -2.0506 31 1 9.3299 -2.6279 0.1231 32 1 7.2813 -1.8280 3.3304 33 1 4.6260 -2.0024 4.8255 34 1 5.3721 -0.5099 4.2057 35 1 7.3504 -0.8989 5.6485 36 1 5.8597 -0.8134 6.6179 37 1 7.2803 -2.7138 7.3370 38 1 5.7409 -3.2895 6.6543 39 1 7.6499 -4.6073 5.7788 40 1 8.3959 -3.1146 5.1587 41 1 5.6710 -4.2183 4.3354 42 1 7.1617 -4.3044 3.3666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:13 Heat of formation + Delta-G solvation = -36.188510 kcal Electronic energy + Delta-G solvation = -21522.096205 eV Core-core repulsion = 18466.053185 eV Total energy + Delta-G solvation = -3056.043020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54713 -38.75313 -36.57298 -34.55235 -32.44157 -31.25799 -30.81051 -30.03573 -28.92027 -25.45999 -23.73160 -22.70740 -22.21104 -21.74454 -20.24229 -19.77188 -18.11536 -16.85901 -16.67635 -15.49253 -15.26250 -15.14347 -14.33689 -14.26949 -14.03767 -14.00300 -13.36761 -13.08431 -12.93982 -12.83694 -12.68181 -12.55519 -12.25952 -11.75235 -11.55912 -11.41372 -11.15723 -11.06446 -10.91004 -10.73556 -10.40754 -10.30311 -10.03178 -9.84160 -9.78622 -9.32159 -9.24660 -9.08717 -8.49569 -7.96422 -6.00747 -3.97837 1.45052 1.55040 3.28762 3.33079 3.40405 3.46623 4.04477 4.48407 4.49160 4.66467 4.69268 4.86320 5.07972 5.14264 5.16959 5.25681 5.32575 5.34092 5.41168 5.42231 5.43960 5.54378 5.57350 5.75265 5.89433 5.94127 5.99090 6.03348 6.11195 6.11298 6.15999 6.29689 6.35416 6.39405 6.52390 6.64551 6.71196 6.94951 7.34711 7.49275 7.62923 7.83114 8.11366 8.57575 9.04402 9.62352 11.12785 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.006033 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.093984 B = 4640.345967 C = 6015.028611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.003 4.003 10 C -0.058 4.058 11 C -0.131 4.131 12 C -0.051 4.051 13 C -0.212 4.212 14 C 0.116 3.884 15 N -0.543 5.543 16 C 0.322 3.678 17 O -0.287 6.287 18 C 0.091 3.909 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.134 4.134 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.008 0.992 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.151 0.849 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.003 -6.129 7.130 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.040 4.040 10 C -0.096 4.096 11 C -0.133 4.133 12 C -0.076 4.076 13 C -0.233 4.233 14 C -0.039 4.039 15 N -0.266 5.266 16 C 0.143 3.857 17 O -0.193 6.193 18 C 0.035 3.965 19 C -0.158 4.158 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.988 -5.925 8.009 20.562 hybrid contribution 0.172 0.888 -0.857 1.246 sum 18.160 -5.036 7.152 20.157 Atomic orbital electron populations 1.69918 1.06232 1.26770 1.51450 1.24986 0.94673 0.99007 0.94642 0.86827 0.80499 0.83831 0.78489 1.20336 1.21360 1.19036 1.21125 0.89311 0.94480 1.50477 0.90919 1.19513 0.96931 0.91291 0.96315 1.20449 0.86218 1.00641 1.02265 1.20463 0.99241 1.03220 0.90424 1.21393 0.93667 0.94794 0.97748 1.21885 0.95223 1.06951 0.99197 1.22198 0.99296 0.95356 0.87076 1.67195 1.07059 1.19707 1.32656 1.19674 0.87179 0.92406 0.86489 1.86415 1.34289 1.86405 1.12216 1.22289 0.95422 0.96332 0.82479 1.21638 0.99453 1.00702 0.94029 1.21480 1.00050 0.97096 0.96473 1.21591 1.00589 0.95873 0.97952 1.21467 0.98649 1.00098 0.94854 1.21955 1.00734 0.97023 0.97430 0.92807 0.96296 0.97335 0.91676 0.91011 0.84355 0.85162 0.83166 0.89660 0.90635 0.90953 0.91881 0.91298 0.91986 0.91711 0.91835 0.91843 0.91307 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 2 C 0.07 2.01 5.47 -17.81 -0.10 1.92 16 3 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 10 C -0.06 -1.21 5.03 -27.88 -0.14 -1.35 16 11 C -0.13 -2.40 5.17 -104.32 -0.54 -2.94 16 12 C -0.05 -0.78 9.83 -39.31 -0.39 -1.16 16 13 C -0.21 -2.74 10.11 -39.43 -0.40 -3.14 16 14 C 0.12 1.55 11.18 -17.56 -0.20 1.36 16 15 N -0.54 -8.76 8.64 -13.33 -0.12 -8.88 16 16 C 0.32 5.85 7.43 -17.13 -0.13 5.72 16 17 O -0.29 -5.30 8.92 -18.73 -0.17 -5.47 16 18 C 0.09 1.35 2.38 -26.73 -0.06 1.29 16 19 C -0.12 -1.63 5.57 -26.73 -0.15 -1.78 16 20 C -0.11 -1.18 5.92 -26.73 -0.16 -1.34 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 22 C -0.11 -1.14 5.92 -26.71 -0.16 -1.29 16 23 C -0.13 -1.70 5.55 -26.71 -0.15 -1.85 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 26 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 27 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 28 H 0.07 1.54 7.71 -51.92 -0.40 1.14 16 29 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.09 1.29 6.98 -51.93 -0.36 0.93 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -32.22 338.31 -9.28 -41.49 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.03 Total: -1.04 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.17 Total: -21.40 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.66 Total: -36.39 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.17 Total: -5.47 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.22 -9.28 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.303 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds