Wall clock time and date at job start Mon Mar 30 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00533 * 2 1 4 4 H 1.48500 * 109.46658 * 270.00041 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99881 * 3 2 1 6 6 H 1.48500 * 109.47253 * 150.00469 * 3 2 1 7 7 C 1.37885 * 119.99190 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99341 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46674 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47041 * 180.02562 * 10 9 7 12 12 C 1.38419 * 120.44219 * 264.97601 * 11 10 9 13 13 C 1.38789 * 118.48594 * 180.02562 * 12 11 10 14 14 C 1.38086 * 119.28490 * 359.97438 * 13 12 11 15 15 N 1.31939 * 120.83564 * 359.72943 * 14 13 12 16 16 C 1.32268 * 121.64437 * 0.55726 * 15 14 13 17 17 O 1.35676 * 119.68259 * 179.71479 * 16 15 14 18 18 C 1.42895 * 117.00073 * 359.72556 * 17 16 15 19 19 C 1.53002 * 109.47308 * 150.00343 * 18 17 16 20 20 C 1.53000 * 109.47233 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47060 * 299.99657 * 20 19 18 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 20 19 23 23 C 1.52997 * 109.47503 * 270.00317 * 18 17 16 24 24 H 0.97001 * 119.99103 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46850 * 60.00670 * 9 7 2 26 26 H 1.08994 * 109.47477 * 299.99903 * 9 7 2 27 27 H 1.08999 * 109.47203 * 60.00037 * 10 9 7 28 28 H 1.09008 * 109.47007 * 300.00072 * 10 9 7 29 29 H 1.08002 * 120.75814 * 0.04270 * 12 11 10 30 30 H 1.07994 * 120.35539 * 180.02562 * 13 12 11 31 31 H 1.08002 * 119.57984 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47333 * 30.00157 * 18 17 16 33 33 H 1.08992 * 109.47063 * 60.00217 * 19 18 17 34 34 H 1.09004 * 109.46733 * 299.99930 * 19 18 17 35 35 H 1.09002 * 109.47398 * 59.99826 * 20 19 18 36 36 H 1.09001 * 109.47194 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 39 39 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 41 41 H 1.09002 * 109.47153 * 299.99957 * 23 18 17 42 42 H 1.09001 * 109.47289 * 60.00040 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5469 1.4399 0.6999 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0000 10 6 4.0214 -2.6368 0.0001 11 6 5.5283 -2.6370 0.0001 12 6 6.2297 -2.7416 -1.1886 13 6 7.6168 -2.7382 -1.1413 14 6 8.2507 -2.6307 0.0807 15 7 7.5547 -2.5265 1.1968 16 6 6.2321 -2.5316 1.1928 17 8 5.5563 -2.4280 2.3647 18 6 6.3372 -2.3233 3.5568 19 6 5.5700 -1.5071 4.5990 20 6 6.4064 -1.3945 5.8752 21 6 6.6849 -2.7939 6.4276 22 6 7.4519 -3.6102 5.3855 23 6 6.6152 -3.7229 4.1090 24 1 -0.4849 0.8401 0.0004 25 1 3.8751 -0.6800 0.8895 26 1 3.8745 -0.6811 -0.8905 27 1 3.6576 -3.1508 -0.8896 28 1 3.6583 -3.1505 0.8904 29 1 5.7094 -2.8239 -2.1315 30 1 8.1941 -2.8178 -2.0506 31 1 9.3299 -2.6279 0.1231 32 1 7.2813 -1.8280 3.3304 33 1 4.6260 -2.0024 4.8255 34 1 5.3721 -0.5099 4.2057 35 1 7.3504 -0.8989 5.6485 36 1 5.8597 -0.8134 6.6179 37 1 7.2803 -2.7138 7.3370 38 1 5.7409 -3.2895 6.6543 39 1 7.6499 -4.6073 5.7788 40 1 8.3959 -3.1146 5.1587 41 1 5.6710 -4.2183 4.3354 42 1 7.1617 -4.3044 3.3666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:12 Heat of formation + Delta-G solvation = -55.306108 kcal Electronic energy + Delta-G solvation = -21522.925206 eV Core-core repulsion = 18466.053185 eV Total energy + Delta-G solvation = -3056.872021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75314 -39.83507 -37.65196 -36.29525 -34.41772 -32.54040 -31.77409 -31.40317 -30.22878 -27.23123 -24.87277 -23.91057 -23.53520 -22.79271 -21.97449 -20.77012 -19.31691 -18.99416 -17.93511 -16.68189 -16.40203 -16.36144 -16.16208 -15.37636 -15.24910 -15.03920 -14.81586 -14.71542 -14.51049 -14.07731 -13.94633 -13.75130 -13.46105 -13.20581 -13.07446 -12.85406 -12.55845 -12.20581 -12.11671 -12.00040 -11.82592 -11.67857 -11.57345 -11.39960 -11.33545 -11.00188 -10.78925 -10.57215 -10.43846 -9.22336 -8.32139 -6.35205 0.26027 0.38047 1.29374 1.32082 1.44646 2.13013 2.32525 2.86503 3.02920 3.37510 3.69610 3.73222 3.94075 4.01024 4.05943 4.14511 4.20718 4.23087 4.30708 4.46511 4.48542 4.50514 4.59016 4.63860 4.68208 4.78557 4.90351 5.00642 5.04753 5.05695 5.15668 5.15856 5.18560 5.26073 5.29860 5.32493 5.40417 5.47085 5.56885 5.63323 5.68644 6.25766 6.43150 6.71120 6.93921 7.28898 8.84775 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.006033 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.093984 B = 4640.345967 C = 6015.028611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.035 0.965 9 C 0.007 3.993 10 C -0.045 4.045 11 C -0.167 4.167 12 C -0.050 4.050 13 C -0.198 4.198 14 C 0.120 3.880 15 N -0.551 5.551 16 C 0.302 3.698 17 O -0.318 6.318 18 C 0.088 3.912 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.127 4.127 24 H 0.267 0.733 25 H 0.005 0.995 26 H 0.016 0.984 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.155 0.845 30 H 0.174 0.826 31 H 0.193 0.807 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.578 -5.569 6.945 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.054 0.946 9 C -0.030 4.030 10 C -0.083 4.083 11 C -0.169 4.169 12 C -0.075 4.075 13 C -0.218 4.218 14 C -0.036 4.036 15 N -0.275 5.275 16 C 0.124 3.876 17 O -0.226 6.226 18 C 0.032 3.968 19 C -0.160 4.160 20 C -0.145 4.145 21 C -0.157 4.157 22 C -0.145 4.145 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.173 0.827 30 H 0.191 0.809 31 H 0.210 0.790 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.567 -5.379 7.826 23.565 hybrid contribution -0.910 0.625 -0.851 1.394 sum 20.657 -4.754 6.975 22.315 Atomic orbital electron populations 1.70058 1.08035 1.28107 1.52670 1.25904 0.95551 1.03095 0.94138 0.85737 0.79122 0.78870 0.79423 1.18523 1.20452 1.18490 1.21439 0.91690 0.93278 1.50254 0.94620 1.19353 0.93935 0.94068 0.95683 1.20123 0.88936 0.97777 1.01429 1.20290 0.97390 1.07106 0.92161 1.21704 0.95064 0.93632 0.97146 1.22321 0.94183 1.04551 1.00744 1.23040 1.01150 0.92875 0.86516 1.67279 1.06029 1.20079 1.34121 1.19791 0.88064 0.93442 0.86262 1.86372 1.36080 1.86734 1.13436 1.22496 0.94978 0.97660 0.81702 1.21691 0.99603 0.99241 0.95430 1.21481 0.99863 0.98291 0.94885 1.21595 1.00805 0.94781 0.98552 1.21465 0.98271 1.01307 0.93450 1.21899 1.00607 0.95428 0.98557 0.92405 0.97665 0.96587 0.91240 0.93150 0.82739 0.80875 0.79015 0.89963 0.91979 0.92792 0.91056 0.90137 0.89558 0.92060 0.90233 0.91198 0.92388 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.99 13.96 21.45 0.30 -60.70 16 2 C 0.01 0.61 5.47 84.66 0.46 1.08 16 3 Si 0.94 46.60 27.47 68.60 1.88 48.48 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 7 C -0.53 -32.05 9.66 25.60 0.25 -31.80 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C 0.01 0.36 4.02 29.85 0.12 0.48 16 10 C -0.04 -1.94 5.03 29.85 0.15 -1.79 16 11 C -0.17 -6.13 5.17 -19.67 -0.10 -6.23 16 12 C -0.05 -1.43 9.83 22.44 0.22 -1.21 16 13 C -0.20 -4.30 10.11 22.37 0.23 -4.08 16 14 C 0.12 2.76 11.18 84.64 0.95 3.71 16 15 N -0.55 -16.99 8.64 -308.94 -2.67 -19.66 16 16 C 0.30 11.08 7.43 84.78 0.63 11.71 16 17 O -0.32 -12.35 8.92 -89.94 -0.80 -13.15 16 18 C 0.09 2.66 2.38 30.59 0.07 2.73 16 19 C -0.12 -3.42 5.57 30.60 0.17 -3.24 16 20 C -0.11 -2.13 5.92 30.59 0.18 -1.94 16 21 C -0.12 -2.03 5.92 30.59 0.18 -1.85 16 22 C -0.11 -1.97 5.92 30.61 0.18 -1.79 16 23 C -0.13 -3.25 5.55 30.61 0.17 -3.08 16 24 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 25 H 0.00 0.27 7.20 -2.39 -0.02 0.25 16 26 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 27 H 0.07 2.85 8.06 -2.39 -0.02 2.83 16 28 H 0.05 2.33 7.71 -2.38 -0.02 2.31 16 29 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.08 2.49 6.98 -2.39 -0.02 2.48 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.06 338.31 3.49 -69.57 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.92 Total: 12.77 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.86 Total: -37.31 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.37 Total: -80.36 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.80 Total: -13.15 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.48 kcal Total: -73.06 3.49 -69.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.264 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds