Wall clock time and date at job start Mon Mar 30 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38118 * 119.96541 * 2 1 4 4 C 1.38893 * 119.92559 * 180.02562 * 3 2 1 5 5 N 1.39681 * 120.07439 * 180.02562 * 4 3 2 6 6 C 1.47011 * 110.99600 * 303.63203 * 5 4 3 7 7 C 1.53102 * 109.25484 * 177.61082 * 6 5 4 8 8 O 1.43010 * 109.26001 * 56.84540 * 7 6 5 9 9 C 1.43019 * 113.73950 * 301.33051 * 8 7 6 10 10 C 1.47015 * 110.99639 * 179.97438 * 5 4 3 11 11 C 1.38928 * 119.85061 * 359.97438 * 4 3 2 12 12 C 1.38082 * 119.92302 * 359.73122 * 11 4 3 13 13 C 1.38263 * 119.95977 * 180.02562 * 2 1 3 14 14 C 1.50703 * 119.92630 * 359.97438 * 13 2 1 15 15 C 1.53000 * 109.46912 * 85.00154 * 14 13 2 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00489 * 20 18 16 22 22 H 1.48505 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00464 * 20 18 16 24 24 H 1.09002 * 109.47046 * 269.97962 * 1 2 3 25 25 H 1.09004 * 109.47220 * 29.97442 * 1 2 3 26 26 H 1.08992 * 109.47571 * 149.97974 * 1 2 3 27 27 H 1.08002 * 120.03905 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.51056 * 297.54033 * 6 5 4 29 29 H 1.09000 * 109.50914 * 57.67590 * 6 5 4 30 30 H 1.09006 * 109.50570 * 296.91131 * 7 6 5 31 31 H 1.08997 * 109.54545 * 176.80888 * 7 6 5 32 32 H 1.08994 * 109.50901 * 298.73544 * 9 8 7 33 33 H 1.09004 * 109.53823 * 178.62368 * 9 8 7 34 34 H 1.08996 * 109.50480 * 302.32277 * 10 5 4 35 35 H 1.08996 * 109.50925 * 62.41586 * 10 5 4 36 36 H 1.08005 * 120.03508 * 180.02562 * 11 4 3 37 37 H 1.08005 * 119.96324 * 180.29666 * 12 11 4 38 38 H 1.09002 * 109.47152 * 324.99926 * 14 13 2 39 39 H 1.09001 * 109.46980 * 205.00026 * 14 13 2 40 40 H 1.09001 * 109.47194 * 299.99742 * 15 14 13 41 41 H 1.08992 * 109.47399 * 59.99914 * 15 14 13 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1956 -0.0005 5 7 4.2866 2.4039 0.0000 6 6 3.8929 3.2417 -1.1420 7 6 4.6388 4.5767 -1.0697 8 8 6.0470 4.3293 -1.0397 9 6 6.4655 3.5167 0.0603 10 6 5.7382 2.1709 -0.0001 11 6 4.2765 -0.0099 -0.0005 12 6 3.5805 -1.2024 0.0056 13 6 2.1975 -1.1979 -0.0005 14 6 1.4414 -2.5015 -0.0005 15 6 1.0762 -2.8792 -1.4375 16 6 0.3207 -4.1832 -1.4376 17 1 0.1206 -4.6913 -0.5058 18 6 -0.1160 -4.7268 -2.6270 19 7 0.1272 -4.1078 -3.7615 20 14 -1.0519 -6.3435 -2.6271 21 1 -2.2917 -6.1977 -1.8227 22 1 -1.4065 -6.7101 -4.0218 23 1 -0.2013 -7.4080 -2.0369 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6569 2.1319 -0.0004 28 1 4.1472 2.7327 -2.0717 29 1 2.8186 3.4226 -1.1075 30 1 4.3436 5.1101 -0.1660 31 1 4.3936 5.1793 -1.9443 32 1 6.2235 4.0192 0.9968 33 1 7.5415 3.3519 0.0031 34 1 6.0105 1.5704 0.8678 35 1 6.0222 1.6439 -0.9109 36 1 5.3565 -0.0141 -0.0005 37 1 4.1168 -2.1399 0.0105 38 1 0.5311 -2.3936 0.5893 39 1 2.0649 -3.2832 0.4334 40 1 0.4527 -2.0976 -1.8714 41 1 1.9864 -2.9871 -2.0273 42 1 -0.1803 -4.4901 -4.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:52 Heat of formation + Delta-G solvation = -27.710398 kcal Electronic energy + Delta-G solvation = -21032.157886 eV Core-core repulsion = 17976.482505 eV Total energy + Delta-G solvation = -3055.675382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49061 -38.77397 -36.20007 -33.60989 -32.34657 -31.71687 -31.31181 -29.07911 -26.86284 -26.69962 -24.50227 -24.09216 -21.80271 -21.38944 -20.71834 -19.30394 -17.36426 -16.41225 -16.37909 -15.76243 -15.43142 -15.24817 -14.92058 -14.52784 -14.41060 -14.24615 -13.38828 -13.28219 -12.97260 -12.72158 -12.35332 -12.25645 -11.88464 -11.78538 -11.62533 -11.53144 -11.36162 -10.99103 -10.92031 -10.77657 -10.57926 -10.47559 -10.06086 -9.78325 -9.64218 -9.17531 -9.07061 -8.36464 -8.34440 -7.45256 -5.99749 -4.02972 1.71245 1.76037 3.32842 3.37424 3.39675 3.49164 3.64715 4.13122 4.45927 4.60492 4.72340 4.81341 4.89601 5.05182 5.17265 5.20951 5.30687 5.35546 5.36659 5.48770 5.51588 5.54867 5.67332 5.73815 5.77494 5.82569 6.04410 6.15411 6.23249 6.27869 6.43530 6.63764 6.68446 6.81579 6.83872 6.92261 7.02294 7.11979 7.21960 7.53387 7.69372 7.82938 8.00868 8.40992 9.04103 9.61059 11.11054 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.003366 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.743978 B = 8315.423190 C = 8354.689209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.061 4.061 3 C -0.136 4.136 4 C 0.086 3.914 5 N -0.487 5.487 6 C 0.019 3.981 7 C 0.063 3.937 8 O -0.386 6.386 9 C 0.063 3.937 10 C 0.014 3.986 11 C -0.171 4.171 12 C -0.095 4.095 13 C -0.077 4.077 14 C -0.079 4.079 15 C 0.031 3.969 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 15.830 7.802 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.061 4.061 3 C -0.156 4.156 4 C -0.010 4.010 5 N -0.204 5.204 6 C -0.107 4.107 7 C -0.014 4.014 8 O -0.304 6.304 9 C -0.014 4.014 10 C -0.114 4.114 11 C -0.192 4.192 12 C -0.113 4.113 13 C -0.077 4.077 14 C -0.116 4.116 15 C -0.006 4.006 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.240 16.217 7.884 20.262 hybrid contribution -0.453 -1.469 -0.557 1.635 sum 8.787 14.748 7.328 18.666 Atomic orbital electron populations 1.20910 0.91168 1.03715 1.01949 1.19654 0.96117 0.92022 0.98326 1.20518 0.91886 0.97637 1.05528 1.18691 0.92819 0.88170 1.01344 1.59434 1.05249 1.14862 1.40810 1.22931 1.01521 0.94413 0.91860 1.22711 0.80692 0.95339 1.02625 1.87987 1.23147 1.70692 1.48605 1.22705 0.98974 0.89701 0.89990 1.22935 0.87315 0.98457 1.02685 1.21136 0.99350 0.92009 1.06669 1.20918 0.93887 0.97338 0.99180 1.20199 0.93571 0.95918 0.98033 1.20810 0.98004 0.91147 1.01642 1.19067 0.96564 0.96077 0.88921 1.21235 1.35545 1.06619 0.92727 0.92679 1.25015 0.96221 0.97442 0.95656 1.69959 1.46562 1.39149 0.97679 0.86673 0.80385 0.84087 0.76945 1.20215 1.21310 1.20253 0.91648 0.92269 0.89403 0.86484 0.92946 0.88961 0.92186 0.88143 0.92228 0.88204 0.88970 0.92749 0.86343 0.86164 0.92084 0.92509 0.96241 0.96631 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.21 36.01 0.33 -1.58 16 2 C -0.06 -1.04 5.88 -104.66 -0.62 -1.66 16 3 C -0.14 -2.09 8.85 -39.38 -0.35 -2.44 16 4 C 0.09 1.28 5.63 -83.78 -0.47 0.80 16 5 N -0.49 -6.12 4.77 -170.81 -0.82 -6.93 16 6 C 0.02 0.21 5.41 -3.71 -0.02 0.19 16 7 C 0.06 0.60 7.01 37.21 0.26 0.86 16 8 O -0.39 -4.26 10.83 -35.23 -0.38 -4.65 16 9 C 0.06 0.58 7.01 37.21 0.26 0.84 16 10 C 0.01 0.14 4.33 -3.71 -0.02 0.13 16 11 C -0.17 -2.60 8.82 -39.38 -0.35 -2.95 16 12 C -0.09 -1.62 9.67 -39.61 -0.38 -2.00 16 13 C -0.08 -1.43 5.14 -104.59 -0.54 -1.97 16 14 C -0.08 -1.64 4.58 -27.88 -0.13 -1.77 16 15 C 0.03 0.79 4.76 -27.88 -0.13 0.66 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 26 H 0.09 1.61 5.41 -51.93 -0.28 1.33 16 27 H 0.12 1.58 7.20 -52.49 -0.38 1.20 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.96 6.86 -51.93 -0.36 0.61 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.91 7.23 -51.93 -0.38 0.53 16 35 H 0.05 0.62 7.53 -51.93 -0.39 0.23 16 36 H 0.12 1.53 5.81 -52.48 -0.31 1.22 16 37 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.06 1.23 6.98 -51.93 -0.36 0.86 16 39 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 40 H 0.02 0.53 6.90 -51.93 -0.36 0.17 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -31.21 331.77 -9.61 -40.82 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.57 Total: -0.30 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -2.56 Total: -24.33 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: -0.08 Total: -33.09 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.38 Total: -4.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.21 -9.61 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.109 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds