Wall clock time and date at job start Mon Mar 30 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38118 * 119.96541 * 2 1 4 4 C 1.38893 * 119.92559 * 180.02562 * 3 2 1 5 5 N 1.39681 * 120.07439 * 180.02562 * 4 3 2 6 6 C 1.47011 * 110.99600 * 303.63203 * 5 4 3 7 7 C 1.53102 * 109.25484 * 177.61082 * 6 5 4 8 8 O 1.43010 * 109.26001 * 56.84540 * 7 6 5 9 9 C 1.43019 * 113.73950 * 301.33051 * 8 7 6 10 10 C 1.47015 * 110.99639 * 179.97438 * 5 4 3 11 11 C 1.38928 * 119.85061 * 359.97438 * 4 3 2 12 12 C 1.38082 * 119.92302 * 359.73122 * 11 4 3 13 13 C 1.38263 * 119.95977 * 180.02562 * 2 1 3 14 14 C 1.50703 * 119.92630 * 359.97438 * 13 2 1 15 15 C 1.53000 * 109.46912 * 85.00154 * 14 13 2 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00489 * 20 18 16 22 22 H 1.48505 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00464 * 20 18 16 24 24 H 1.09002 * 109.47046 * 269.97962 * 1 2 3 25 25 H 1.09004 * 109.47220 * 29.97442 * 1 2 3 26 26 H 1.08992 * 109.47571 * 149.97974 * 1 2 3 27 27 H 1.08002 * 120.03905 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.51056 * 297.54033 * 6 5 4 29 29 H 1.09000 * 109.50914 * 57.67590 * 6 5 4 30 30 H 1.09006 * 109.50570 * 296.91131 * 7 6 5 31 31 H 1.08997 * 109.54545 * 176.80888 * 7 6 5 32 32 H 1.08994 * 109.50901 * 298.73544 * 9 8 7 33 33 H 1.09004 * 109.53823 * 178.62368 * 9 8 7 34 34 H 1.08996 * 109.50480 * 302.32277 * 10 5 4 35 35 H 1.08996 * 109.50925 * 62.41586 * 10 5 4 36 36 H 1.08005 * 120.03508 * 180.02562 * 11 4 3 37 37 H 1.08005 * 119.96324 * 180.29666 * 12 11 4 38 38 H 1.09002 * 109.47152 * 324.99926 * 14 13 2 39 39 H 1.09001 * 109.46980 * 205.00026 * 14 13 2 40 40 H 1.09001 * 109.47194 * 299.99742 * 15 14 13 41 41 H 1.08992 * 109.47399 * 59.99914 * 15 14 13 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1956 -0.0005 5 7 4.2866 2.4039 0.0000 6 6 3.8929 3.2417 -1.1420 7 6 4.6388 4.5767 -1.0697 8 8 6.0470 4.3293 -1.0397 9 6 6.4655 3.5167 0.0603 10 6 5.7382 2.1709 -0.0001 11 6 4.2765 -0.0099 -0.0005 12 6 3.5805 -1.2024 0.0056 13 6 2.1975 -1.1979 -0.0005 14 6 1.4414 -2.5015 -0.0005 15 6 1.0762 -2.8792 -1.4375 16 6 0.3207 -4.1832 -1.4376 17 1 0.1206 -4.6913 -0.5058 18 6 -0.1160 -4.7268 -2.6270 19 7 0.1272 -4.1078 -3.7615 20 14 -1.0519 -6.3435 -2.6271 21 1 -2.2917 -6.1977 -1.8227 22 1 -1.4065 -6.7101 -4.0218 23 1 -0.2013 -7.4080 -2.0369 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6569 2.1319 -0.0004 28 1 4.1472 2.7327 -2.0717 29 1 2.8186 3.4226 -1.1075 30 1 4.3436 5.1101 -0.1660 31 1 4.3936 5.1793 -1.9443 32 1 6.2235 4.0192 0.9968 33 1 7.5415 3.3519 0.0031 34 1 6.0105 1.5704 0.8678 35 1 6.0222 1.6439 -0.9109 36 1 5.3565 -0.0141 -0.0005 37 1 4.1168 -2.1399 0.0105 38 1 0.5311 -2.3936 0.5893 39 1 2.0649 -3.2832 0.4334 40 1 0.4527 -2.0976 -1.8714 41 1 1.9864 -2.9871 -2.0273 42 1 -0.1803 -4.4901 -4.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:52 Heat of formation + Delta-G solvation = -46.040387 kcal Electronic energy + Delta-G solvation = -21032.952734 eV Core-core repulsion = 17976.482505 eV Total energy + Delta-G solvation = -3056.470230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52726 -39.85836 -37.30942 -35.49718 -33.60382 -33.35560 -32.22315 -30.53127 -28.16883 -27.95582 -26.03865 -25.14316 -23.31240 -22.55063 -22.05645 -20.52857 -18.55243 -18.33164 -17.32628 -16.82934 -16.54620 -16.38441 -16.21385 -15.89115 -15.57515 -15.37861 -14.76625 -14.55780 -14.31130 -14.15504 -14.11656 -13.46327 -13.23684 -13.06873 -12.90391 -12.79923 -12.65503 -12.53626 -12.41340 -12.18399 -11.93789 -11.62389 -11.58344 -11.53674 -11.12511 -10.89842 -10.54476 -10.32020 -9.61594 -8.70039 -8.18644 -6.31116 0.43419 0.48532 1.39950 1.43015 1.50917 2.40652 2.51165 2.86569 2.93439 3.13545 3.78489 3.82359 3.94293 4.00334 4.09207 4.14587 4.17664 4.25141 4.40854 4.43572 4.49535 4.54554 4.64346 4.73593 4.76664 4.81971 4.82853 4.88251 4.93008 4.95944 5.04392 5.16827 5.23080 5.32896 5.48729 5.51500 5.66485 5.76861 5.87277 5.94133 5.95536 6.12267 6.23616 6.32410 6.85800 7.38175 8.92105 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.003366 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.743978 B = 8315.423190 C = 8354.689209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.139 4.139 4 C 0.093 3.907 5 N -0.488 5.488 6 C 0.017 3.983 7 C 0.066 3.934 8 O -0.403 6.403 9 C 0.065 3.935 10 C 0.010 3.990 11 C -0.174 4.174 12 C -0.104 4.104 13 C -0.109 4.109 14 C -0.062 4.062 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.267 1.267 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.139 0.861 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.056 0.944 40 H -0.004 1.004 41 H -0.018 1.018 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 16.878 8.854 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.004 4.004 5 N -0.204 5.204 6 C -0.109 4.109 7 C -0.011 4.011 8 O -0.322 6.322 9 C -0.012 4.012 10 C -0.117 4.117 11 C -0.195 4.195 12 C -0.123 4.123 13 C -0.110 4.110 14 C -0.099 4.099 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.014 0.986 41 H 0.001 0.999 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.650 17.279 8.954 21.722 hybrid contribution -0.505 -1.685 -0.882 1.968 sum 9.145 15.594 8.072 19.798 Atomic orbital electron populations 1.20870 0.90589 1.02986 1.02900 1.19842 0.96781 0.92207 0.98255 1.20715 0.92361 0.97748 1.05099 1.18919 0.92962 0.89091 0.99407 1.59454 1.06225 1.13598 1.41162 1.23015 1.02385 0.94951 0.90505 1.22813 0.79835 0.94358 1.04073 1.87973 1.23891 1.70908 1.49413 1.22833 0.99961 0.88500 0.89899 1.23059 0.86203 0.99754 1.02698 1.21368 1.00547 0.91443 1.06117 1.21051 0.93497 0.98432 0.99274 1.20086 0.94303 0.95334 1.01301 1.20505 0.98536 0.92727 0.98173 1.18878 0.94282 0.94863 0.91599 1.21690 1.35756 1.07577 0.93194 0.92026 1.25973 0.97143 1.01402 0.95154 1.70104 1.47761 1.41092 0.98392 0.85517 0.79199 0.79241 0.77199 1.18977 1.20917 1.19214 0.89817 0.90392 0.92612 0.84349 0.94526 0.88214 0.91140 0.86318 0.91385 0.86104 0.87997 0.93595 0.84062 0.85919 0.91704 0.92489 0.98572 0.99947 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 9.21 71.24 0.66 -3.04 16 2 C -0.07 -2.41 5.88 -19.89 -0.12 -2.53 16 3 C -0.14 -4.12 8.85 22.40 0.20 -3.93 16 4 C 0.09 2.64 5.63 38.21 0.22 2.85 16 5 N -0.49 -11.25 4.77 -694.31 -3.31 -14.56 16 6 C 0.02 0.35 5.41 86.32 0.47 0.82 16 7 C 0.07 1.08 7.01 72.02 0.50 1.58 16 8 O -0.40 -7.94 10.83 -148.98 -1.61 -9.55 16 9 C 0.06 1.02 7.01 72.01 0.50 1.52 16 10 C 0.01 0.19 4.33 86.31 0.37 0.57 16 11 C -0.17 -5.14 8.82 22.40 0.20 -4.94 16 12 C -0.10 -3.59 9.67 22.25 0.22 -3.37 16 13 C -0.11 -4.18 5.14 -19.84 -0.10 -4.29 16 14 C -0.06 -2.68 4.58 29.85 0.14 -2.54 16 15 C 0.04 2.21 4.76 29.85 0.14 2.35 16 16 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 18 C 0.00 0.06 5.46 84.66 0.46 0.52 16 19 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 20 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.08 2.11 8.08 -2.38 -0.02 2.09 16 26 H 0.05 2.12 5.41 -2.39 -0.01 2.11 16 27 H 0.14 3.43 7.20 -2.91 -0.02 3.41 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.87 6.86 -2.39 -0.02 1.85 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.12 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.10 1.75 7.23 -2.39 -0.02 1.73 16 35 H 0.05 0.97 7.53 -2.39 -0.02 0.96 16 36 H 0.14 3.42 5.81 -2.91 -0.02 3.40 16 37 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 38 H 0.06 2.68 6.98 -2.39 -0.02 2.66 16 39 H 0.06 2.38 8.05 -2.39 -0.02 2.37 16 40 H 0.00 -0.23 6.90 -2.39 -0.02 -0.25 16 41 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -68.13 331.77 2.47 -65.66 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.99 Total: 14.77 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 4.09 Total: -45.52 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -3.03 Total: -71.88 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -1.61 Total: -9.55 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.13 2.47 -65.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.622 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds