Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47463 * 269.99985 * 3 2 1 5 5 H 1.48510 * 109.47191 * 29.99771 * 3 2 1 6 6 H 1.48502 * 109.47217 * 149.99417 * 3 2 1 7 7 C 1.37880 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00066 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46392 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46662 * 180.02562 * 11 10 9 13 13 C 1.38302 * 119.96263 * 90.00063 * 12 11 10 14 14 C 1.38270 * 120.15011 * 180.02562 * 13 12 11 15 15 C 1.38128 * 120.07232 * 0.02562 * 14 13 12 16 16 C 1.38895 * 119.92253 * 359.97438 * 15 14 13 17 17 N 1.39681 * 120.06953 * 179.97438 * 16 15 14 18 18 C 1.47024 * 110.99173 * 236.32419 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.35279 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 111.00027 * 0.02562 * 17 16 15 23 23 C 1.38085 * 119.95907 * 270.27314 * 12 11 10 24 24 H 0.97001 * 120.00036 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47330 * 60.00122 * 9 7 2 26 26 H 1.09004 * 109.47102 * 299.99712 * 9 7 2 27 27 H 1.09001 * 109.47414 * 60.00375 * 10 9 7 28 28 H 1.08996 * 109.47102 * 299.99355 * 10 9 7 29 29 H 1.09000 * 109.47592 * 59.99926 * 11 10 9 30 30 H 1.09004 * 109.47236 * 299.99274 * 11 10 9 31 31 H 1.08002 * 119.92701 * 0.04331 * 13 12 11 32 32 H 1.07994 * 119.96595 * 180.02562 * 14 13 12 33 33 H 1.07998 * 120.03576 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.47369 * 62.44004 * 18 17 16 35 35 H 1.08998 * 109.54483 * 302.30212 * 18 17 16 36 36 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 37 37 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 38 38 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 39 39 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 40 40 H 1.08994 * 109.50209 * 57.67329 * 22 17 16 41 41 H 1.09003 * 109.54070 * 297.56294 * 22 17 16 42 42 H 1.07997 * 120.03847 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0022 12 6 6.0538 -4.0574 0.0015 13 6 6.2851 -4.7076 -1.1971 14 6 6.7454 -6.0114 -1.2023 15 6 6.9755 -6.6690 -0.0096 16 6 6.7443 -6.0189 1.1959 17 7 6.9754 -6.6811 2.4038 18 6 5.7658 -6.6897 3.2395 19 6 6.0791 -7.3716 4.5740 20 8 6.5763 -8.6894 4.3260 21 6 7.7545 -8.7173 3.5159 22 6 7.4585 -8.0498 2.1702 23 6 6.2773 -4.7104 1.1974 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6586 -3.1503 -0.8893 28 1 3.6579 -3.1506 0.8907 29 1 5.9141 -2.1230 0.8927 30 1 5.9155 -2.1224 -0.8874 31 1 6.1059 -4.1958 -2.1311 32 1 6.9254 -6.5162 -2.1399 33 1 7.3347 -7.6875 -0.0143 34 1 4.9744 -7.2375 2.7278 35 1 5.4411 -5.6653 3.4217 36 1 5.1710 -7.4321 5.1739 37 1 6.8317 -6.7935 5.1103 38 1 8.5561 -8.1781 4.0207 39 1 8.0585 -9.7509 3.3511 40 1 8.3688 -8.0172 1.5717 41 1 6.6953 -8.6206 1.6413 42 1 6.0920 -4.2037 2.1330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = -26.090215 kcal Electronic energy + Delta-G solvation = -20716.982982 eV Core-core repulsion = 17661.377856 eV Total energy + Delta-G solvation = -3055.605125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63955 -38.79154 -36.18007 -34.49993 -32.56800 -31.76187 -30.55296 -30.19078 -27.25732 -26.70665 -24.71710 -23.26226 -22.04549 -21.37029 -20.24673 -19.84333 -17.58113 -16.62612 -16.48834 -16.15065 -15.72441 -15.46123 -15.08564 -14.87438 -14.43928 -14.24338 -13.76357 -13.54360 -13.36719 -12.91723 -12.63677 -12.41154 -11.97838 -11.90249 -11.76822 -11.61579 -11.32224 -11.07814 -10.96164 -10.91808 -10.68389 -10.22350 -9.89851 -9.70368 -9.69034 -9.56208 -9.17849 -8.54695 -8.52369 -7.90800 -6.02884 -4.00701 1.42095 1.47853 3.31474 3.33939 3.38816 3.42670 3.54833 3.88382 4.46418 4.50492 4.59917 4.68092 4.79906 4.94454 4.96745 5.00300 5.14727 5.25276 5.29078 5.31093 5.37813 5.42592 5.49061 5.56573 5.61246 5.63551 5.86418 5.95052 5.99349 6.15323 6.30653 6.46169 6.51289 6.65285 6.71182 6.76456 6.83827 6.89249 6.94010 7.24740 7.33656 7.45854 7.81435 8.56118 9.02450 9.59775 11.10725 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.003442 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.864194 B = 8133.943288 C = 8868.646264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.094 4.094 11 C -0.088 4.088 12 C -0.041 4.041 13 C -0.141 4.141 14 C -0.094 4.094 15 C -0.182 4.182 16 C 0.106 3.894 17 N -0.488 5.488 18 C 0.018 3.982 19 C 0.063 3.937 20 O -0.385 6.385 21 C 0.063 3.937 22 C 0.014 3.986 23 C -0.135 4.135 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.768 -16.348 4.551 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.126 4.126 12 C -0.042 4.042 13 C -0.160 4.160 14 C -0.112 4.112 15 C -0.203 4.203 16 C 0.009 3.991 17 N -0.205 5.205 18 C -0.107 4.107 19 C -0.014 4.014 20 O -0.303 6.303 21 C -0.014 4.014 22 C -0.113 4.113 23 C -0.155 4.155 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.885 -16.183 4.968 24.626 hybrid contribution -0.068 0.795 -0.637 1.021 sum 17.817 -15.388 4.331 23.937 Atomic orbital electron populations 1.69921 1.06318 1.26838 1.51344 1.25049 0.94737 0.99202 0.94628 0.86765 0.80363 0.83585 0.78488 1.20322 1.21432 1.18981 1.21167 0.89611 0.94416 1.50578 0.91127 1.19601 0.97071 0.92319 0.96210 1.21437 0.90655 0.99772 1.01298 1.20847 0.98197 0.90992 1.02522 1.20004 0.95019 0.96750 0.92402 1.21043 1.01898 0.95144 0.97893 1.20942 0.98219 0.94750 0.97330 1.21152 1.07125 0.99960 0.92025 1.18837 0.98091 0.93793 0.88356 1.59343 1.30502 1.15939 1.14703 1.22967 0.90339 1.03011 0.94418 1.22734 1.00040 0.83404 0.95261 1.87997 1.43874 1.27689 1.70785 1.22700 0.87870 1.01228 0.89647 1.22949 1.01507 0.88189 0.98695 1.20667 1.03364 0.93158 0.98345 0.92783 0.96638 0.97065 0.92709 0.92806 0.91359 0.91255 0.86048 0.86291 0.86135 0.92781 0.88518 0.87858 0.92014 0.92150 0.88159 0.88995 0.92732 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.87 5.14 -26.73 -0.14 -2.01 16 11 C -0.09 -1.42 5.34 -27.88 -0.15 -1.57 16 12 C -0.04 -0.61 5.13 -104.65 -0.54 -1.15 16 13 C -0.14 -1.93 9.70 -39.55 -0.38 -2.31 16 14 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 15 C -0.18 -2.17 8.82 -39.38 -0.35 -2.52 16 16 C 0.11 1.36 5.64 -83.78 -0.47 0.89 16 17 N -0.49 -5.51 4.77 -170.79 -0.81 -6.33 16 18 C 0.02 0.19 5.41 -3.70 -0.02 0.17 16 19 C 0.06 0.57 7.01 37.21 0.26 0.83 16 20 O -0.39 -3.99 10.83 -35.23 -0.38 -4.37 16 21 C 0.06 0.51 7.01 37.21 0.26 0.77 16 22 C 0.01 0.13 4.33 -3.71 -0.02 0.11 16 23 C -0.14 -1.91 8.85 -39.38 -0.35 -2.26 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.18 5.81 -52.49 -0.31 0.88 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.01 6.85 -51.93 -0.36 0.66 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.74 7.23 -51.93 -0.38 0.36 16 41 H 0.05 0.52 7.54 -51.93 -0.39 0.13 16 42 H 0.12 1.67 7.18 -52.49 -0.38 1.30 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -32.14 334.31 -9.69 -41.82 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.80 Total: -1.36 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.83 Total: -24.57 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: -0.04 Total: -33.78 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.38 Total: -4.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.14 -9.69 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.734 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds