Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47463 * 269.99985 * 3 2 1 5 5 H 1.48510 * 109.47191 * 29.99771 * 3 2 1 6 6 H 1.48502 * 109.47217 * 149.99417 * 3 2 1 7 7 C 1.37880 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00066 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46392 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46662 * 180.02562 * 11 10 9 13 13 C 1.38302 * 119.96263 * 90.00063 * 12 11 10 14 14 C 1.38270 * 120.15011 * 180.02562 * 13 12 11 15 15 C 1.38128 * 120.07232 * 0.02562 * 14 13 12 16 16 C 1.38895 * 119.92253 * 359.97438 * 15 14 13 17 17 N 1.39681 * 120.06953 * 179.97438 * 16 15 14 18 18 C 1.47024 * 110.99173 * 236.32419 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.35279 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 111.00027 * 0.02562 * 17 16 15 23 23 C 1.38085 * 119.95907 * 270.27314 * 12 11 10 24 24 H 0.97001 * 120.00036 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47330 * 60.00122 * 9 7 2 26 26 H 1.09004 * 109.47102 * 299.99712 * 9 7 2 27 27 H 1.09001 * 109.47414 * 60.00375 * 10 9 7 28 28 H 1.08996 * 109.47102 * 299.99355 * 10 9 7 29 29 H 1.09000 * 109.47592 * 59.99926 * 11 10 9 30 30 H 1.09004 * 109.47236 * 299.99274 * 11 10 9 31 31 H 1.08002 * 119.92701 * 0.04331 * 13 12 11 32 32 H 1.07994 * 119.96595 * 180.02562 * 14 13 12 33 33 H 1.07998 * 120.03576 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.47369 * 62.44004 * 18 17 16 35 35 H 1.08998 * 109.54483 * 302.30212 * 18 17 16 36 36 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 37 37 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 38 38 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 39 39 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 40 40 H 1.08994 * 109.50209 * 57.67329 * 22 17 16 41 41 H 1.09003 * 109.54070 * 297.56294 * 22 17 16 42 42 H 1.07997 * 120.03847 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0022 12 6 6.0538 -4.0574 0.0015 13 6 6.2851 -4.7076 -1.1971 14 6 6.7454 -6.0114 -1.2023 15 6 6.9755 -6.6690 -0.0096 16 6 6.7443 -6.0189 1.1959 17 7 6.9754 -6.6811 2.4038 18 6 5.7658 -6.6897 3.2395 19 6 6.0791 -7.3716 4.5740 20 8 6.5763 -8.6894 4.3260 21 6 7.7545 -8.7173 3.5159 22 6 7.4585 -8.0498 2.1702 23 6 6.2773 -4.7104 1.1974 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6586 -3.1503 -0.8893 28 1 3.6579 -3.1506 0.8907 29 1 5.9141 -2.1230 0.8927 30 1 5.9155 -2.1224 -0.8874 31 1 6.1059 -4.1958 -2.1311 32 1 6.9254 -6.5162 -2.1399 33 1 7.3347 -7.6875 -0.0143 34 1 4.9744 -7.2375 2.7278 35 1 5.4411 -5.6653 3.4217 36 1 5.1710 -7.4321 5.1739 37 1 6.8317 -6.7935 5.1103 38 1 8.5561 -8.1781 4.0207 39 1 8.0585 -9.7509 3.3511 40 1 8.3688 -8.0172 1.5717 41 1 6.6953 -8.6206 1.6413 42 1 6.0920 -4.2037 2.1330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = -45.572713 kcal Electronic energy + Delta-G solvation = -20717.827806 eV Core-core repulsion = 17661.377856 eV Total energy + Delta-G solvation = -3056.449950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50202 -39.68719 -37.21607 -36.00481 -34.41061 -32.70546 -31.85491 -31.18903 -28.79962 -27.56138 -25.78406 -24.68303 -22.94573 -22.45564 -21.84777 -20.89100 -18.95193 -18.34424 -17.26808 -17.04646 -16.62869 -16.41963 -16.17287 -15.98196 -15.72615 -15.52742 -14.94684 -14.84112 -14.62419 -14.29366 -14.15911 -13.46767 -13.28987 -13.21367 -12.81284 -12.69934 -12.47732 -12.43819 -12.25389 -12.12881 -11.78200 -11.64353 -11.44213 -11.33950 -11.29692 -11.03747 -10.76511 -10.43859 -9.63772 -8.85134 -8.29691 -6.34200 0.41536 0.47198 1.36334 1.38444 1.50873 2.36643 2.49049 2.85556 2.92457 3.05664 3.75104 3.80651 3.88405 3.95480 4.07608 4.15752 4.18249 4.22855 4.29999 4.43030 4.49061 4.51337 4.57440 4.63546 4.67950 4.71196 4.73352 4.86630 4.91755 5.02973 5.08291 5.08785 5.14611 5.26916 5.50015 5.54294 5.57906 5.65981 5.72693 5.83890 5.92689 6.09870 6.27888 6.30381 6.73954 7.30495 8.87440 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.003442 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.864194 B = 8133.943288 C = 8868.646264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.012 4.012 10 C -0.085 4.085 11 C -0.076 4.076 12 C -0.060 4.060 13 C -0.154 4.154 14 C -0.093 4.093 15 C -0.182 4.182 16 C 0.100 3.900 17 N -0.494 5.494 18 C 0.019 3.981 19 C 0.066 3.934 20 O -0.402 6.402 21 C 0.061 3.939 22 C 0.013 3.987 23 C -0.150 4.150 24 H 0.266 0.734 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.408 -16.630 4.436 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.049 4.049 10 C -0.122 4.122 11 C -0.114 4.114 12 C -0.060 4.060 13 C -0.173 4.173 14 C -0.111 4.111 15 C -0.202 4.202 16 C 0.003 3.997 17 N -0.211 5.211 18 C -0.107 4.107 19 C -0.011 4.011 20 O -0.321 6.321 21 C -0.015 4.015 22 C -0.114 4.114 23 C -0.170 4.170 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 20.545 -16.489 4.857 26.787 hybrid contribution -0.938 0.743 -0.594 1.336 sum 19.607 -15.746 4.263 25.506 Atomic orbital electron populations 1.70083 1.08426 1.28208 1.52758 1.26093 0.95670 1.03769 0.94042 0.85591 0.79520 0.77817 0.79314 1.19011 1.20991 1.16728 1.21538 0.92411 0.92951 1.50407 0.95509 1.19561 0.93619 0.95043 0.96702 1.21257 0.93721 0.96987 1.00260 1.20656 0.94896 0.92509 1.03301 1.19923 0.96588 0.96216 0.93288 1.21236 1.02255 0.96055 0.97721 1.21270 0.97055 0.94163 0.98629 1.21486 1.06214 1.00951 0.91562 1.19009 0.97667 0.93563 0.89470 1.59354 1.30461 1.17170 1.14083 1.22964 0.89915 1.02733 0.95080 1.22777 1.00849 0.83053 0.94449 1.87977 1.44758 1.28144 1.71181 1.22875 0.87229 1.02645 0.88796 1.23063 1.01852 0.86901 0.99604 1.20734 1.04152 0.94012 0.98086 0.92495 0.96005 0.96009 0.93721 0.94003 0.90791 0.90229 0.85359 0.83579 0.83769 0.94084 0.89032 0.86614 0.91421 0.91707 0.85833 0.87559 0.93042 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.03 5.47 84.66 0.46 0.50 16 3 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 7 C -0.54 -31.75 9.66 25.60 0.25 -31.50 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.08 -3.39 5.14 30.59 0.16 -3.23 16 11 C -0.08 -2.39 5.34 29.85 0.16 -2.23 16 12 C -0.06 -1.72 5.13 -19.88 -0.10 -1.83 16 13 C -0.15 -3.99 9.70 22.29 0.22 -3.78 16 14 C -0.09 -2.03 10.04 22.25 0.22 -1.81 16 15 C -0.18 -3.94 8.82 22.40 0.20 -3.74 16 16 C 0.10 2.46 5.64 38.21 0.22 2.68 16 17 N -0.49 -10.55 4.77 -694.26 -3.31 -13.86 16 18 C 0.02 0.39 5.41 86.31 0.47 0.86 16 19 C 0.07 1.13 7.01 72.02 0.50 1.63 16 20 O -0.40 -7.70 10.83 -148.98 -1.61 -9.31 16 21 C 0.06 0.87 7.01 72.01 0.50 1.37 16 22 C 0.01 0.20 4.33 86.31 0.37 0.58 16 23 C -0.15 -4.16 8.85 22.40 0.20 -3.96 16 24 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 25 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 26 H 0.02 0.98 7.57 -2.39 -0.02 0.97 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.21 8.09 -2.39 -0.02 2.19 16 30 H 0.08 2.31 8.08 -2.39 -0.02 2.29 16 31 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.14 2.38 5.81 -2.91 -0.02 2.36 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.95 6.85 -2.39 -0.02 1.94 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 1.39 7.23 -2.39 -0.02 1.38 16 41 H 0.05 0.87 7.54 -2.39 -0.02 0.85 16 42 H 0.12 3.29 7.18 -2.91 -0.02 3.27 16 Total: -1.00 -70.22 334.31 2.13 -68.09 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.92 Total: 14.16 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 3.95 Total: -44.92 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -3.01 Total: -74.61 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.61 Total: -9.31 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -70.22 2.13 -68.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.520 kcal (2) G-P(sol) polarization free energy of solvation -70.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds