Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37983 * 119.92758 * 2 1 4 4 C 1.39558 * 119.85193 * 180.27783 * 3 2 1 5 5 C 1.47846 * 120.14513 * 179.71869 * 4 3 2 6 6 O 1.21552 * 119.99669 * 320.81528 * 5 4 3 7 7 N 1.34780 * 119.99665 * 140.81092 * 5 4 3 8 8 C 1.46499 * 119.99285 * 184.84025 * 7 5 4 9 9 C 1.46490 * 120.00213 * 4.83788 * 7 5 4 10 10 C 1.39593 * 119.70849 * 359.73978 * 4 3 2 11 11 C 1.37933 * 119.86087 * 0.02562 * 10 4 3 12 12 C 1.38330 * 119.92880 * 179.76177 * 2 1 3 13 13 C 1.50706 * 119.85466 * 0.02562 * 12 2 1 14 14 C 1.53004 * 109.47040 * 84.72298 * 13 12 2 15 15 C 1.53006 * 109.46807 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46665 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00032 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47285 * 90.00550 * 20 18 16 22 22 H 1.48504 * 109.47049 * 210.00151 * 20 18 16 23 23 H 1.48501 * 109.46940 * 330.00251 * 20 18 16 24 24 H 1.08998 * 109.46863 * 270.24063 * 1 2 3 25 25 H 1.08999 * 109.46727 * 30.23566 * 1 2 3 26 26 H 1.08999 * 109.47003 * 150.23697 * 1 2 3 27 27 H 1.08000 * 120.07597 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.47201 * 90.00717 * 8 7 5 29 29 H 1.09008 * 109.46940 * 209.99803 * 8 7 5 30 30 H 1.08998 * 109.47627 * 329.99830 * 8 7 5 31 31 H 1.09001 * 109.46850 * 85.66151 * 9 7 5 32 32 H 1.09002 * 109.47262 * 205.66201 * 9 7 5 33 33 H 1.09001 * 109.47564 * 325.66723 * 9 7 5 34 34 H 1.08007 * 120.07214 * 180.02562 * 10 4 3 35 35 H 1.07998 * 119.93341 * 179.97438 * 11 10 4 36 36 H 1.08997 * 109.46741 * 324.72220 * 13 12 2 37 37 H 1.09000 * 109.47097 * 204.72339 * 13 12 2 38 38 H 1.09000 * 109.46796 * 300.00318 * 14 13 12 39 39 H 1.08999 * 109.46982 * 60.00033 * 14 13 12 40 40 H 1.09000 * 109.46837 * 299.99739 * 15 14 13 41 41 H 1.08997 * 109.47234 * 59.99763 * 15 14 13 42 42 H 0.96991 * 120.00266 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5910 1.1940 -0.0059 5 6 4.3351 2.4715 -0.0122 6 8 3.9331 3.4057 -0.6780 7 7 5.4591 2.6003 0.7203 8 6 6.1379 3.8962 0.7986 9 6 6.0020 1.4444 1.4382 10 6 4.2812 -0.0193 -0.0062 11 6 3.5811 -1.2077 -0.0013 12 6 2.1972 -1.1988 0.0050 13 6 1.4387 -2.5011 0.0098 14 6 1.0680 -2.8807 -1.4253 15 6 0.2974 -4.2025 -1.4203 16 6 -0.0683 -4.5760 -2.8337 17 1 0.2204 -3.9350 -3.6535 18 6 -0.7705 -5.7367 -3.0803 19 7 -1.1217 -6.5175 -2.0819 20 14 -1.2232 -6.2001 -4.8323 21 1 -0.1386 -7.0252 -5.4221 22 1 -2.4890 -6.9767 -4.8276 23 1 -1.4021 -4.9668 -5.6400 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6555 2.1312 -0.0004 28 1 5.7419 4.4635 1.6410 29 1 7.2075 3.7383 0.9377 30 1 5.9695 4.4509 -0.1244 31 1 6.6412 0.8686 0.7690 32 1 6.5861 1.7884 2.2919 33 1 5.1827 0.8162 1.7879 34 1 5.3613 -0.0276 -0.0103 35 1 4.1139 -2.1472 -0.0019 36 1 0.5307 -2.3905 0.6025 37 1 2.0624 -3.2832 0.4429 38 1 0.4444 -2.0986 -1.8584 39 1 1.9760 -2.9913 -2.0180 40 1 0.9207 -4.9847 -0.9870 41 1 -0.6106 -4.0915 -0.8276 42 1 -1.6160 -7.3338 -2.2553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = -26.858240 kcal Electronic energy + Delta-G solvation = -20564.451330 eV Core-core repulsion = 17508.812901 eV Total energy + Delta-G solvation = -3055.638429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54738 -38.87758 -35.85870 -34.87641 -33.02122 -32.27626 -30.66233 -28.59801 -27.61020 -26.69496 -25.95522 -23.75672 -21.95440 -21.43201 -20.11043 -19.55271 -17.09612 -16.66738 -16.33599 -16.08990 -15.51156 -15.23383 -14.47995 -14.42020 -13.91854 -13.61099 -13.41804 -13.36453 -13.17025 -12.92026 -12.66620 -12.42584 -12.35177 -12.15973 -11.98124 -11.61177 -11.39931 -11.32031 -10.95022 -10.68427 -10.66860 -10.47797 -10.03248 -9.68032 -9.35472 -9.12351 -9.00662 -8.72951 -8.37797 -8.34525 -5.99927 -4.02080 0.98596 1.40971 2.62004 2.78218 3.32304 3.38612 3.42527 3.76897 4.31889 4.46599 4.69030 4.82753 4.92342 4.95197 5.02374 5.06947 5.26670 5.33458 5.35756 5.36697 5.39321 5.48692 5.63827 5.78052 5.79491 5.87199 6.01248 6.04722 6.13201 6.25818 6.32208 6.37895 6.39788 6.61364 6.86912 6.88599 6.97067 7.05320 7.13820 7.67867 7.81397 7.94907 8.00395 8.43245 9.05197 9.62163 11.11341 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.003047 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.100408 B = 9188.007133 C = 9252.277286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.147 4.147 5 C 0.563 3.437 6 O -0.537 6.537 7 N -0.621 5.621 8 C 0.085 3.915 9 C 0.072 3.928 10 C -0.100 4.100 11 C -0.124 4.124 12 C -0.040 4.040 13 C -0.090 4.090 14 C -0.104 4.104 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.573 15.995 10.168 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.083 4.083 4 C -0.150 4.150 5 C 0.353 3.647 6 O -0.415 6.415 7 N -0.355 5.355 8 C -0.058 4.058 9 C -0.070 4.070 10 C -0.118 4.118 11 C -0.142 4.142 12 C -0.040 4.040 13 C -0.127 4.127 14 C -0.141 4.141 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.280 16.351 9.859 23.257 hybrid contribution -0.076 -0.397 -0.909 0.995 sum 13.205 15.954 8.950 22.561 Atomic orbital electron populations 1.20930 0.90620 1.03906 1.02448 1.19772 0.96592 0.92010 1.00480 1.20980 0.92143 0.98053 0.97110 1.19626 0.94243 0.92476 1.08668 1.18520 0.79875 0.87776 0.78521 1.90764 1.67682 1.41371 1.41658 1.47632 1.26509 1.11475 1.49868 1.21652 0.96576 0.84537 1.02992 1.22178 0.99865 0.88582 0.96424 1.21484 0.99970 0.91504 0.98852 1.21040 0.93753 0.97913 1.01489 1.20319 0.93737 0.95601 0.94330 1.20895 0.99347 0.92160 1.00339 1.21650 1.00101 1.00205 0.92161 1.19116 0.94884 0.90581 0.96985 1.21267 1.35027 1.06436 0.93082 0.92726 1.25020 0.95985 0.96502 0.96948 1.69961 1.39502 1.13447 1.30678 0.86616 0.77878 0.78550 0.85107 1.20685 1.21226 1.19856 0.91205 0.91646 0.89727 0.85591 0.92705 0.91185 0.90361 0.92152 0.91027 0.89885 0.85260 0.85317 0.90868 0.91176 0.93033 0.93244 0.96602 0.96559 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.21 36.01 0.33 -1.26 16 2 C -0.09 -1.25 5.87 -104.68 -0.61 -1.86 16 3 C -0.06 -0.89 9.28 -39.18 -0.36 -1.25 16 4 C -0.15 -1.96 5.24 -104.97 -0.55 -2.51 16 5 C 0.56 7.65 7.35 -12.33 -0.09 7.56 16 6 O -0.54 -9.11 16.47 5.32 0.09 -9.02 16 7 N -0.62 -6.21 3.27 -190.65 -0.62 -6.83 16 8 C 0.08 0.67 10.45 59.85 0.63 1.29 16 9 C 0.07 0.49 8.88 59.84 0.53 1.02 16 10 C -0.10 -1.16 7.57 -39.19 -0.30 -1.46 16 11 C -0.12 -1.59 9.66 -39.64 -0.38 -1.97 16 12 C -0.04 -0.58 5.14 -104.53 -0.54 -1.11 16 13 C -0.09 -1.46 4.64 -27.88 -0.13 -1.59 16 14 C -0.10 -2.08 4.94 -26.73 -0.13 -2.21 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 26 H 0.08 1.23 5.38 -51.93 -0.28 0.95 16 27 H 0.13 1.67 8.05 -52.49 -0.42 1.25 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.36 8.07 -51.92 -0.42 -0.06 16 30 H 0.08 0.73 7.36 -51.93 -0.38 0.35 16 31 H 0.06 0.34 6.90 -51.93 -0.36 -0.02 16 32 H 0.07 0.33 8.04 -51.93 -0.42 -0.09 16 33 H 0.08 0.61 5.81 -51.93 -0.30 0.31 16 34 H 0.13 1.16 5.31 -52.48 -0.28 0.88 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.07 1.15 6.99 -51.93 -0.36 0.79 16 37 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 38 H 0.05 1.03 6.87 -51.93 -0.36 0.68 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -33.09 341.38 -8.33 -41.42 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.49 Total: -2.88 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.16 Total: -18.43 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.11 Total: -32.93 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.09 -8.33 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.563 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds