Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37983 * 119.92758 * 2 1 4 4 C 1.39558 * 119.85193 * 180.27783 * 3 2 1 5 5 C 1.47846 * 120.14513 * 179.71869 * 4 3 2 6 6 O 1.21552 * 119.99669 * 320.81528 * 5 4 3 7 7 N 1.34780 * 119.99665 * 140.81092 * 5 4 3 8 8 C 1.46499 * 119.99285 * 184.84025 * 7 5 4 9 9 C 1.46490 * 120.00213 * 4.83788 * 7 5 4 10 10 C 1.39593 * 119.70849 * 359.73978 * 4 3 2 11 11 C 1.37933 * 119.86087 * 0.02562 * 10 4 3 12 12 C 1.38330 * 119.92880 * 179.76177 * 2 1 3 13 13 C 1.50706 * 119.85466 * 0.02562 * 12 2 1 14 14 C 1.53004 * 109.47040 * 84.72298 * 13 12 2 15 15 C 1.53006 * 109.46807 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46665 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00032 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47285 * 90.00550 * 20 18 16 22 22 H 1.48504 * 109.47049 * 210.00151 * 20 18 16 23 23 H 1.48501 * 109.46940 * 330.00251 * 20 18 16 24 24 H 1.08998 * 109.46863 * 270.24063 * 1 2 3 25 25 H 1.08999 * 109.46727 * 30.23566 * 1 2 3 26 26 H 1.08999 * 109.47003 * 150.23697 * 1 2 3 27 27 H 1.08000 * 120.07597 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.47201 * 90.00717 * 8 7 5 29 29 H 1.09008 * 109.46940 * 209.99803 * 8 7 5 30 30 H 1.08998 * 109.47627 * 329.99830 * 8 7 5 31 31 H 1.09001 * 109.46850 * 85.66151 * 9 7 5 32 32 H 1.09002 * 109.47262 * 205.66201 * 9 7 5 33 33 H 1.09001 * 109.47564 * 325.66723 * 9 7 5 34 34 H 1.08007 * 120.07214 * 180.02562 * 10 4 3 35 35 H 1.07998 * 119.93341 * 179.97438 * 11 10 4 36 36 H 1.08997 * 109.46741 * 324.72220 * 13 12 2 37 37 H 1.09000 * 109.47097 * 204.72339 * 13 12 2 38 38 H 1.09000 * 109.46796 * 300.00318 * 14 13 12 39 39 H 1.08999 * 109.46982 * 60.00033 * 14 13 12 40 40 H 1.09000 * 109.46837 * 299.99739 * 15 14 13 41 41 H 1.08997 * 109.47234 * 59.99763 * 15 14 13 42 42 H 0.96991 * 120.00266 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5910 1.1940 -0.0059 5 6 4.3351 2.4715 -0.0122 6 8 3.9331 3.4057 -0.6780 7 7 5.4591 2.6003 0.7203 8 6 6.1379 3.8962 0.7986 9 6 6.0020 1.4444 1.4382 10 6 4.2812 -0.0193 -0.0062 11 6 3.5811 -1.2077 -0.0013 12 6 2.1972 -1.1988 0.0050 13 6 1.4387 -2.5011 0.0098 14 6 1.0680 -2.8807 -1.4253 15 6 0.2974 -4.2025 -1.4203 16 6 -0.0683 -4.5760 -2.8337 17 1 0.2204 -3.9350 -3.6535 18 6 -0.7705 -5.7367 -3.0803 19 7 -1.1217 -6.5175 -2.0819 20 14 -1.2232 -6.2001 -4.8323 21 1 -0.1386 -7.0252 -5.4221 22 1 -2.4890 -6.9767 -4.8276 23 1 -1.4021 -4.9668 -5.6400 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6555 2.1312 -0.0004 28 1 5.7419 4.4635 1.6410 29 1 7.2075 3.7383 0.9377 30 1 5.9695 4.4509 -0.1244 31 1 6.6412 0.8686 0.7690 32 1 6.5861 1.7884 2.2919 33 1 5.1827 0.8162 1.7879 34 1 5.3613 -0.0276 -0.0103 35 1 4.1139 -2.1472 -0.0019 36 1 0.5307 -2.3905 0.6025 37 1 2.0624 -3.2832 0.4429 38 1 0.4444 -2.0986 -1.8584 39 1 1.9760 -2.9913 -2.0180 40 1 0.9207 -4.9847 -0.9870 41 1 -0.6106 -4.0915 -0.8276 42 1 -1.6160 -7.3338 -2.2553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = -45.339732 kcal Electronic energy + Delta-G solvation = -20565.252748 eV Core-core repulsion = 17508.812901 eV Total energy + Delta-G solvation = -3056.439847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52683 -39.92310 -36.77682 -36.42887 -34.69518 -33.53490 -32.12494 -29.43597 -28.94395 -27.58751 -27.15990 -25.33168 -23.13985 -22.63390 -21.71560 -20.47209 -18.47666 -18.00377 -17.59324 -17.00002 -16.71034 -16.43151 -16.23374 -15.34761 -15.19535 -14.85102 -14.59965 -14.35302 -14.15595 -14.07960 -13.80853 -13.52401 -13.34188 -13.28348 -13.03569 -13.02090 -12.80318 -12.66691 -12.58857 -12.31858 -12.19007 -11.90973 -11.39615 -11.32523 -11.21975 -10.91756 -10.53561 -9.88266 -9.68480 -9.48190 -8.19090 -6.29496 -0.06550 0.39799 1.40073 1.40794 1.52081 1.62297 1.99186 2.41430 2.73373 3.13947 3.44787 3.80838 3.88479 3.95317 4.21196 4.25904 4.30764 4.38542 4.44953 4.52260 4.56098 4.64746 4.69796 4.74613 4.80301 4.89118 4.90509 4.95643 4.98319 5.05780 5.19273 5.23995 5.30335 5.33662 5.43777 5.46845 5.56528 5.68449 5.82428 5.87628 5.96789 6.21408 6.28094 6.87597 7.00381 7.39517 8.92368 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033642 B = 0.003047 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.100408 B = 9188.007133 C = 9252.277286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 C -0.076 4.076 4 C -0.152 4.152 5 C 0.556 3.444 6 O -0.584 6.584 7 N -0.614 5.614 8 C 0.080 3.920 9 C 0.063 3.937 10 C -0.087 4.087 11 C -0.123 4.123 12 C -0.057 4.057 13 C -0.078 4.078 14 C -0.089 4.089 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.055 0.945 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.047 0.953 40 H -0.005 1.005 41 H -0.006 1.006 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.520 16.366 10.300 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 C -0.095 4.095 4 C -0.155 4.155 5 C 0.345 3.655 6 O -0.465 6.465 7 N -0.346 5.346 8 C -0.062 4.062 9 C -0.078 4.078 10 C -0.105 4.105 11 C -0.141 4.141 12 C -0.057 4.057 13 C -0.116 4.116 14 C -0.127 4.127 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.785 3.215 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.190 1.190 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.268 16.718 10.023 24.760 hybrid contribution -0.609 -0.477 -0.873 1.166 sum 14.659 16.241 9.150 23.714 Atomic orbital electron populations 1.20921 0.90318 1.03311 1.03244 1.19858 0.97005 0.92059 1.00580 1.21039 0.92804 0.97875 0.97820 1.19798 0.94157 0.93239 1.08257 1.18644 0.80799 0.87266 0.78750 1.90738 1.69184 1.42640 1.43948 1.47791 1.25209 1.13155 1.48447 1.21835 0.98426 0.83586 1.02344 1.22442 1.00134 0.87700 0.97538 1.21748 1.01412 0.90219 0.97125 1.21278 0.93089 0.99181 1.00557 1.20205 0.94578 0.94570 0.96334 1.20672 0.99857 0.93504 0.97518 1.21401 0.99043 0.97196 0.95035 1.19017 0.94207 0.92710 0.95239 1.21712 1.35214 1.06777 0.94409 0.92658 1.25927 0.95841 0.96460 1.01435 1.70081 1.40187 1.13956 1.33001 0.85520 0.77804 0.78457 0.79728 1.19731 1.20640 1.19047 0.89779 0.90812 0.91606 0.85774 0.91866 0.87772 0.92330 0.90331 0.88197 0.90396 0.82139 0.83529 0.90898 0.90525 0.93390 0.93400 0.98628 0.98721 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.21 71.24 0.66 -2.50 16 2 C -0.09 -2.65 5.87 -19.90 -0.12 -2.76 16 3 C -0.08 -2.10 9.28 22.53 0.21 -1.89 16 4 C -0.15 -3.84 5.24 -20.09 -0.11 -3.95 16 5 C 0.56 14.56 7.35 86.79 0.64 15.20 16 6 O -0.58 -19.99 16.47 -3.88 -0.06 -20.05 16 7 N -0.61 -10.85 3.27 -875.35 -2.87 -13.72 16 8 C 0.08 1.08 10.45 127.77 1.34 2.42 16 9 C 0.06 0.62 8.88 127.77 1.13 1.75 16 10 C -0.09 -1.81 7.57 22.52 0.17 -1.64 16 11 C -0.12 -2.89 9.66 22.23 0.21 -2.68 16 12 C -0.06 -1.60 5.14 -19.80 -0.10 -1.70 16 13 C -0.08 -2.52 4.64 29.85 0.14 -2.38 16 14 C -0.09 -3.62 4.94 30.60 0.15 -3.47 16 15 C 0.03 1.32 4.97 29.85 0.15 1.46 16 16 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 17 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 18 C 0.00 0.06 5.46 84.65 0.46 0.53 16 19 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 20 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 25 H 0.07 1.74 8.08 -2.39 -0.02 1.73 16 26 H 0.07 1.95 5.38 -2.39 -0.01 1.94 16 27 H 0.12 3.36 8.05 -2.91 -0.02 3.34 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.10 0.70 8.07 -2.38 -0.02 0.68 16 30 H 0.06 1.05 7.36 -2.39 -0.02 1.03 16 31 H 0.08 0.53 6.90 -2.39 -0.02 0.52 16 32 H 0.10 0.47 8.04 -2.39 -0.02 0.45 16 33 H 0.08 0.89 5.81 -2.39 -0.01 0.87 16 34 H 0.16 2.26 5.31 -2.91 -0.02 2.24 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.07 2.32 6.99 -2.39 -0.02 2.30 16 37 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 38 H 0.05 1.96 6.87 -2.39 -0.02 1.94 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.26 15.01 8.31 -92.72 -0.77 14.24 16 Total: -1.00 -72.73 341.38 5.55 -67.18 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.00 Total: 8.76 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 5.17 Total: -32.47 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -2.58 Total: -70.01 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.73 5.55 -67.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.843 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds