Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.38833 * 120.75782 * 269.72274 * 12 11 10 14 14 C 1.38049 * 119.28612 * 179.72847 * 13 12 11 15 15 N 1.31963 * 120.83760 * 0.55855 * 14 13 12 16 16 C 1.32248 * 121.64585 * 359.71669 * 15 14 13 17 17 O 1.35679 * 119.68456 * 180.02562 * 16 15 14 18 18 C 1.42903 * 116.99946 * 359.97324 * 17 16 15 19 19 C 1.52990 * 109.47064 * 180.02562 * 18 17 16 20 20 C 1.53787 * 113.61696 * 274.13823 * 19 18 17 21 21 C 1.53952 * 87.02104 * 220.04658 * 20 19 18 22 22 C 1.53783 * 87.11108 * 25.36385 * 21 20 19 23 23 C 1.38377 * 120.75811 * 90.00423 * 12 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 1.07997 * 120.35326 * 359.97320 * 13 12 11 32 32 H 1.08006 * 119.57938 * 180.27468 * 14 13 12 33 33 H 1.08996 * 109.47204 * 300.00992 * 18 17 16 34 34 H 1.09003 * 109.46389 * 60.00455 * 18 17 16 35 35 H 1.09000 * 112.85198 * 45.33543 * 19 18 17 36 36 H 1.08990 * 113.61098 * 334.57118 * 20 19 18 37 37 H 1.08999 * 113.61098 * 105.47361 * 20 19 18 38 38 H 1.08997 * 113.54352 * 270.81441 * 21 20 19 39 39 H 1.08994 * 113.66742 * 139.93006 * 21 20 19 40 40 H 1.09001 * 113.61767 * 220.09047 * 22 21 20 41 41 H 1.09003 * 113.69408 * 89.19901 * 22 21 20 42 42 H 1.07999 * 120.44499 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9165 -6.6755 -1.1956 14 6 3.8178 -7.7206 -1.1605 15 7 4.2382 -8.2130 -0.0107 16 6 3.8216 -7.7263 1.1463 17 8 4.2804 -8.2627 2.3051 18 6 5.2063 -9.3457 2.1969 19 6 5.6074 -9.8156 3.5965 20 6 6.7767 -9.0209 4.2017 21 6 7.3022 -10.3623 4.7445 22 6 6.5404 -11.0381 3.5922 23 6 2.9192 -6.6709 1.1866 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 2.5737 -6.2818 -2.1410 32 1 4.1799 -8.1436 -2.0860 33 1 4.7400 -10.1698 1.6570 34 1 6.0929 -9.0131 1.6569 35 1 4.7555 -9.9189 4.2686 36 1 7.4282 -8.5665 3.4554 37 1 6.4727 -8.3224 4.9813 38 1 6.9144 -10.6145 5.7314 39 1 8.3846 -10.4689 4.6740 40 1 6.0458 -11.9657 3.8804 41 1 7.1262 -11.1370 2.6783 42 1 2.5808 -6.2762 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -13.557250 kcal Electronic energy + Delta-G solvation = -19970.502552 eV Core-core repulsion = 16915.440897 eV Total energy + Delta-G solvation = -3055.061655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58872 -39.25482 -37.59417 -35.12681 -32.99762 -31.07390 -30.69373 -28.68134 -27.22506 -25.92777 -24.17863 -23.24613 -23.10457 -21.30379 -20.13176 -19.73540 -17.77999 -16.97137 -16.24286 -16.21267 -15.76790 -15.60058 -14.98024 -14.62425 -14.45723 -13.70484 -13.63150 -13.50748 -12.92863 -12.77411 -12.56278 -12.17352 -12.12453 -11.91142 -11.82512 -11.24689 -11.13696 -10.88806 -10.80516 -10.77595 -10.68120 -10.53799 -10.41209 -9.72848 -9.71479 -9.48693 -9.21907 -8.92504 -8.40445 -8.34697 -6.00104 -4.02358 1.28793 1.42658 2.98206 3.32140 3.38357 3.42153 3.89657 4.25901 4.30061 4.37194 4.46084 4.48259 4.55782 4.92992 5.03308 5.14247 5.20620 5.27112 5.35710 5.36581 5.38754 5.39635 5.42721 5.57104 5.60559 5.69316 5.73336 5.89003 5.92333 5.96876 6.06323 6.15341 6.25779 6.42826 6.59840 6.78926 6.83585 7.09448 7.33381 7.67006 7.80727 7.93709 7.99853 8.42513 9.04649 9.61783 11.11192 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.002814 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.286227 B = 9946.228377 C =10729.130505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.087 4.087 12 C 0.012 3.988 13 C -0.209 4.209 14 C 0.134 3.866 15 N -0.553 5.553 16 C 0.319 3.681 17 O -0.306 6.306 18 C 0.083 3.917 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.191 4.191 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -21.946 4.158 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.124 4.124 12 C 0.004 3.996 13 C -0.230 4.230 14 C -0.021 4.021 15 N -0.277 5.277 16 C 0.140 3.860 17 O -0.214 6.214 18 C 0.007 3.993 19 C -0.132 4.132 20 C -0.173 4.173 21 C -0.180 4.180 22 C -0.168 4.168 23 C -0.211 4.211 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.921 -22.463 4.460 25.372 hybrid contribution -0.049 1.528 -0.224 1.545 sum 10.872 -20.934 4.236 23.966 Atomic orbital electron populations 1.69967 1.06037 1.26589 1.50938 1.25024 0.94856 0.99254 0.95350 0.86601 0.79877 0.83480 0.78102 1.20665 1.21211 1.19876 1.21253 0.93049 0.91082 1.50480 0.92724 1.19120 0.93951 0.91215 0.97328 1.21629 0.99072 0.92555 1.00738 1.20881 0.95985 0.92333 1.03248 1.20445 0.93783 0.93680 0.91670 1.21936 1.01951 0.99890 0.99184 1.22293 0.92690 0.92626 0.94482 1.67265 1.29343 1.32787 0.98344 1.19763 0.90923 0.90467 0.84804 1.86231 1.59430 1.49079 1.26630 1.22612 0.91865 0.87903 0.96870 1.22647 0.97747 0.97056 0.95757 1.23014 0.97116 0.96551 1.00656 1.22837 1.00151 0.96722 0.98273 1.22885 0.97740 0.96763 0.99381 1.20987 1.01578 0.98424 1.00137 0.93009 0.96482 0.96493 0.93128 0.93133 0.90704 0.90595 0.84562 0.82741 0.91812 0.91679 0.88263 0.89969 0.91073 0.90073 0.91275 0.91100 0.89803 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.08 5.13 -26.73 -0.14 -2.22 16 11 C -0.09 -1.44 5.39 -27.88 -0.15 -1.59 16 12 C 0.01 0.18 5.17 -104.35 -0.54 -0.36 16 13 C -0.21 -2.83 9.81 -39.43 -0.39 -3.21 16 14 C 0.13 1.71 11.18 -17.56 -0.20 1.51 16 15 N -0.55 -7.97 9.22 -13.33 -0.12 -8.09 16 16 C 0.32 4.81 7.49 -17.12 -0.13 4.68 16 17 O -0.31 -4.29 10.12 -18.74 -0.19 -4.48 16 18 C 0.08 0.92 5.13 37.15 0.19 1.11 16 19 C -0.11 -1.01 4.00 -89.81 -0.36 -1.37 16 20 C -0.14 -1.14 7.65 -25.83 -0.20 -1.34 16 21 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 22 C -0.13 -0.91 7.65 -25.92 -0.20 -1.10 16 23 C -0.19 -2.91 9.75 -39.28 -0.38 -3.29 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.06 0.73 7.84 -51.93 -0.41 0.33 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 42 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -31.07 351.11 -9.67 -40.74 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.12 Total: -2.43 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.24 Total: -21.56 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.61 Total: -34.30 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.19 Total: -4.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.07 -9.67 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.180 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds