Wall clock time and date at job start Mon Mar 30 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.38833 * 120.75782 * 269.72274 * 12 11 10 14 14 C 1.38049 * 119.28612 * 179.72847 * 13 12 11 15 15 N 1.31963 * 120.83760 * 0.55855 * 14 13 12 16 16 C 1.32248 * 121.64585 * 359.71669 * 15 14 13 17 17 O 1.35679 * 119.68456 * 180.02562 * 16 15 14 18 18 C 1.42903 * 116.99946 * 359.97324 * 17 16 15 19 19 C 1.52990 * 109.47064 * 180.02562 * 18 17 16 20 20 C 1.53787 * 113.61696 * 274.13823 * 19 18 17 21 21 C 1.53952 * 87.02104 * 220.04658 * 20 19 18 22 22 C 1.53783 * 87.11108 * 25.36385 * 21 20 19 23 23 C 1.38377 * 120.75811 * 90.00423 * 12 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 1.07997 * 120.35326 * 359.97320 * 13 12 11 32 32 H 1.08006 * 119.57938 * 180.27468 * 14 13 12 33 33 H 1.08996 * 109.47204 * 300.00992 * 18 17 16 34 34 H 1.09003 * 109.46389 * 60.00455 * 18 17 16 35 35 H 1.09000 * 112.85198 * 45.33543 * 19 18 17 36 36 H 1.08990 * 113.61098 * 334.57118 * 20 19 18 37 37 H 1.08999 * 113.61098 * 105.47361 * 20 19 18 38 38 H 1.08997 * 113.54352 * 270.81441 * 21 20 19 39 39 H 1.08994 * 113.66742 * 139.93006 * 21 20 19 40 40 H 1.09001 * 113.61767 * 220.09047 * 22 21 20 41 41 H 1.09003 * 113.69408 * 89.19901 * 22 21 20 42 42 H 1.07999 * 120.44499 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9165 -6.6755 -1.1956 14 6 3.8178 -7.7206 -1.1605 15 7 4.2382 -8.2130 -0.0107 16 6 3.8216 -7.7263 1.1463 17 8 4.2804 -8.2627 2.3051 18 6 5.2063 -9.3457 2.1969 19 6 5.6074 -9.8156 3.5965 20 6 6.7767 -9.0209 4.2017 21 6 7.3022 -10.3623 4.7445 22 6 6.5404 -11.0381 3.5922 23 6 2.9192 -6.6709 1.1866 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 2.5737 -6.2818 -2.1410 32 1 4.1799 -8.1436 -2.0860 33 1 4.7400 -10.1698 1.6570 34 1 6.0929 -9.0131 1.6569 35 1 4.7555 -9.9189 4.2686 36 1 7.4282 -8.5665 3.4554 37 1 6.4727 -8.3224 4.9813 38 1 6.9144 -10.6145 5.7314 39 1 8.3846 -10.4689 4.6740 40 1 6.0458 -11.9657 3.8804 41 1 7.1262 -11.1370 2.6783 42 1 2.5808 -6.2762 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:33 Heat of formation + Delta-G solvation = -30.258346 kcal Electronic energy + Delta-G solvation = -19971.226766 eV Core-core repulsion = 16915.440897 eV Total energy + Delta-G solvation = -3055.785869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65063 -40.02710 -38.55575 -36.68706 -34.86389 -32.68157 -31.77631 -29.58175 -28.91037 -26.53368 -25.82669 -24.36220 -24.05975 -22.65839 -21.73765 -20.39053 -18.94415 -18.34749 -17.96408 -17.17185 -16.86384 -16.53293 -16.39555 -15.86018 -15.66320 -15.10965 -14.71676 -14.56862 -14.40620 -14.05726 -13.62759 -13.37419 -13.25651 -13.16034 -12.88362 -12.73474 -12.59619 -12.49776 -12.42033 -11.98903 -11.53552 -11.48342 -11.43497 -11.30935 -11.27507 -11.10358 -10.61402 -10.54929 -10.40867 -9.46917 -8.20131 -6.30858 0.20267 0.28612 1.39794 1.40860 1.52049 2.00672 2.40887 2.79840 3.12989 3.35588 3.60160 3.69058 3.71613 3.82883 3.93549 4.05949 4.17670 4.22240 4.28675 4.43944 4.45963 4.49219 4.55813 4.68411 4.80886 4.81622 4.83450 4.89879 4.96731 4.99440 5.07672 5.08236 5.19786 5.23065 5.27894 5.45976 5.50833 5.53009 5.57559 5.76882 5.86468 6.25632 6.29279 6.85918 6.86107 7.38220 8.91458 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.002814 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.286227 B = 9946.228377 C =10729.130505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.088 4.088 11 C -0.076 4.076 12 C 0.001 3.999 13 C -0.209 4.209 14 C 0.138 3.862 15 N -0.559 5.559 16 C 0.308 3.692 17 O -0.319 6.319 18 C 0.083 3.917 19 C -0.118 4.118 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.205 4.205 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.002 1.002 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.193 0.807 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.071 -22.815 3.622 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.126 4.126 11 C -0.114 4.114 12 C -0.007 4.007 13 C -0.229 4.229 14 C -0.017 4.017 15 N -0.283 5.283 16 C 0.130 3.870 17 O -0.226 6.226 18 C 0.008 3.992 19 C -0.136 4.136 20 C -0.180 4.180 21 C -0.172 4.172 22 C -0.160 4.160 23 C -0.226 4.226 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.174 0.826 32 H 0.210 0.790 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.472 -23.349 3.930 26.761 hybrid contribution -0.535 1.756 -0.071 1.837 sum 11.938 -21.593 3.859 24.973 Atomic orbital electron populations 1.70090 1.07680 1.27755 1.51697 1.25955 0.95789 1.03258 0.94784 0.85483 0.78633 0.78605 0.78560 1.19629 1.20664 1.19001 1.21701 0.93450 0.92580 1.50500 0.92531 1.19030 0.94384 0.92728 0.95205 1.21373 0.97925 0.92719 1.00540 1.20668 0.95993 0.90968 1.03726 1.20315 0.94067 0.93753 0.92560 1.22195 1.01660 0.99823 0.99246 1.22915 0.91684 0.91889 0.95215 1.67359 1.29445 1.32928 0.98612 1.19883 0.91131 0.90643 0.85383 1.86223 1.59965 1.49895 1.26557 1.22782 0.91074 0.87031 0.98327 1.22724 0.98033 0.98409 0.94421 1.23054 0.97116 0.97343 1.00522 1.22824 1.00760 0.95106 0.98520 1.22885 0.97076 0.96318 0.99720 1.21057 1.02212 0.99034 1.00273 0.92745 0.98810 0.98348 0.92811 0.93705 0.90814 0.89681 0.82603 0.79038 0.91782 0.92045 0.88514 0.90392 0.91762 0.89313 0.90305 0.89965 0.89314 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.59 5.13 30.59 0.16 -3.44 16 11 C -0.08 -2.51 5.39 29.85 0.16 -2.35 16 12 C 0.00 0.02 5.17 -19.69 -0.10 -0.09 16 13 C -0.21 -5.22 9.81 22.37 0.22 -5.00 16 14 C 0.14 3.17 11.18 84.63 0.95 4.11 16 15 N -0.56 -15.28 9.22 -308.94 -2.85 -18.12 16 16 C 0.31 9.15 7.49 84.79 0.63 9.78 16 17 O -0.32 -8.94 10.12 -89.97 -0.91 -9.85 16 18 C 0.08 1.79 5.13 71.98 0.37 2.16 16 19 C -0.12 -1.99 4.00 -10.27 -0.04 -2.04 16 20 C -0.14 -2.32 7.65 31.18 0.24 -2.08 16 21 C -0.13 -1.59 8.09 31.18 0.25 -1.34 16 22 C -0.12 -1.49 7.65 31.12 0.24 -1.25 16 23 C -0.21 -6.25 9.75 22.47 0.22 -6.03 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 30 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 31 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 34 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.31 7.92 -2.39 -0.02 1.29 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -66.59 351.11 3.66 -62.94 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.97 Total: 11.72 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 4.14 Total: -36.75 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.56 Total: -74.64 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.91 Total: -9.85 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.59 3.66 -62.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.679 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds