Wall clock time and date at job start Mon Mar 30 2020 01:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99954 * 2 1 4 4 H 1.48492 * 109.47212 * 270.00329 * 3 2 1 5 5 H 1.48501 * 109.47055 * 30.00468 * 3 2 1 6 6 H 1.48499 * 109.46758 * 150.00288 * 3 2 1 7 7 C 1.37874 * 119.99847 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.85214 * 0.02562 * 7 2 1 9 9 C 1.53232 * 108.53492 * 231.32679 * 8 7 2 10 10 C 1.52966 * 109.40429 * 305.36753 * 9 8 7 11 11 H 1.09000 * 109.41061 * 303.49674 * 10 9 8 12 12 N 1.46896 * 109.41572 * 183.70589 * 10 9 8 13 13 C 1.46895 * 111.00131 * 155.00265 * 12 10 9 14 14 C 1.53000 * 109.47338 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46557 * 304.99922 * 14 13 12 16 16 O 1.42893 * 109.47391 * 64.99598 * 14 13 12 17 17 C 1.50695 * 109.47468 * 184.99937 * 14 13 12 18 18 C 1.38233 * 119.99872 * 279.72795 * 17 14 13 19 19 C 1.38242 * 119.99851 * 179.76548 * 18 17 14 20 20 C 1.38233 * 119.99743 * 0.50061 * 19 18 17 21 21 C 1.38235 * 120.00438 * 359.74939 * 20 19 18 22 22 C 1.38235 * 119.99721 * 0.02562 * 21 20 19 23 23 C 1.52961 * 109.81494 * 63.60126 * 10 9 8 24 24 C 1.51267 * 120.85073 * 179.97438 * 7 2 1 25 25 H 0.96994 * 120.00235 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.62579 * 111.60957 * 8 7 2 27 27 H 1.09003 * 109.62539 * 351.03738 * 8 7 2 28 28 H 1.09006 * 109.48210 * 185.39301 * 9 8 7 29 29 H 1.08993 * 109.48488 * 65.34740 * 9 8 7 30 30 H 1.00906 * 110.99918 * 278.95743 * 12 10 9 31 31 H 1.09006 * 109.46683 * 300.00076 * 13 12 10 32 32 H 1.08996 * 109.47054 * 59.99890 * 13 12 10 33 33 H 0.96705 * 114.00174 * 59.99999 * 16 14 13 34 34 H 1.08000 * 120.00030 * 359.97438 * 18 17 14 35 35 H 1.08001 * 119.99592 * 180.22836 * 19 18 17 36 36 H 1.08001 * 119.99914 * 179.72685 * 20 19 18 37 37 H 1.07991 * 120.00290 * 179.97438 * 21 20 19 38 38 H 1.07995 * 119.99916 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.48121 * 56.38116 * 23 10 9 40 40 H 1.08995 * 109.48005 * 176.42727 * 23 10 9 41 41 H 1.09003 * 109.62826 * 248.39160 * 24 7 2 42 42 H 1.09000 * 109.62419 * 8.96228 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5152 -0.0017 9 6 1.8229 -3.3835 1.1322 10 6 3.3400 -3.5079 0.9810 11 1 3.5739 -3.9123 -0.0038 12 7 3.8613 -4.4117 2.0149 13 6 5.1272 -5.0237 1.5896 14 6 5.6376 -5.9567 2.6896 15 1 5.7146 -5.4054 3.6267 16 8 4.7266 -7.0457 2.8512 17 6 6.9944 -6.4893 2.3070 18 6 7.0978 -7.5441 1.4196 19 6 8.3426 -8.0295 1.0650 20 6 9.4836 -7.4669 1.6058 21 6 9.3800 -6.4154 2.4972 22 6 8.1354 -5.9270 2.8482 23 6 3.9907 -2.1320 1.1333 24 6 3.5170 -1.2165 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 1.4200 -3.0184 -0.9565 27 1 0.2036 -2.3410 0.1579 28 1 1.3706 -4.3743 1.0862 29 1 1.5899 -2.9215 2.0914 30 1 3.9702 -3.9300 2.8948 31 1 4.9654 -5.5948 0.6753 32 1 5.8642 -4.2425 1.4044 33 1 4.6087 -7.5814 2.0547 34 1 6.2061 -7.9868 1.0007 35 1 8.4235 -8.8512 0.3688 36 1 10.4560 -7.8490 1.3321 37 1 10.2714 -5.9761 2.9200 38 1 8.0544 -5.1058 3.5450 39 1 3.7063 -1.6996 2.0926 40 1 5.0748 -2.2357 1.0880 41 1 3.8772 -1.5998 -0.9559 42 1 3.8982 -0.2080 0.1589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252003886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:51 Heat of formation + Delta-G solvation = -62.110636 kcal Electronic energy + Delta-G solvation = -20989.878565 eV Core-core repulsion = 17932.711477 eV Total energy + Delta-G solvation = -3057.167088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62548 -39.28336 -37.81152 -35.58232 -33.51536 -32.39880 -31.74205 -31.45011 -29.51180 -27.20415 -24.34502 -23.54036 -23.21529 -22.95133 -21.97195 -21.01223 -18.56313 -18.13338 -17.05918 -16.71708 -16.42696 -16.36461 -15.67306 -15.63317 -15.14089 -14.87563 -14.61279 -14.53105 -14.23462 -14.07254 -13.87435 -13.70680 -13.27106 -13.07287 -12.74484 -12.62923 -12.52210 -12.38458 -12.09970 -11.92880 -11.83808 -11.64233 -11.34627 -11.04243 -10.73097 -10.57366 -10.54248 -9.82684 -9.65892 -9.15551 -8.15832 -6.10350 0.39542 0.49482 1.37815 1.39540 1.48175 2.40390 2.80749 3.06725 3.23648 3.60570 3.86885 3.94549 4.05815 4.10892 4.18508 4.22305 4.29707 4.35460 4.53573 4.61061 4.63818 4.71027 4.77309 4.93911 5.03504 5.05746 5.07574 5.09420 5.15975 5.23016 5.24172 5.40557 5.55582 5.57759 5.61743 5.64108 5.66001 5.78942 5.85756 6.09963 6.20735 6.36176 6.54696 6.84132 6.96976 7.47294 8.95265 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.003583 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.462322 B = 7813.385869 C = 8347.439460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.017 3.983 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.496 4.496 8 C 0.005 3.995 9 C -0.082 4.082 10 C 0.113 3.887 11 H 0.060 0.940 12 N -0.680 5.680 13 C 0.039 3.961 14 C 0.161 3.839 15 H 0.102 0.898 16 O -0.558 6.558 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.020 4.020 25 H 0.262 0.738 26 H -0.003 1.003 27 H 0.022 0.978 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.340 0.660 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.382 0.618 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.183 -14.000 4.275 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.516 4.516 8 C -0.033 4.033 9 C -0.120 4.120 10 C 0.003 3.997 11 H 0.078 0.922 12 N -0.310 5.310 13 C -0.090 4.090 14 C 0.101 3.899 15 H 0.120 0.880 16 O -0.365 6.365 17 C -0.126 4.126 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.166 4.166 24 C -0.059 4.059 25 H 0.071 0.929 26 H 0.015 0.985 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.604 -14.206 4.677 23.870 hybrid contribution 0.400 1.704 -0.641 1.864 sum 19.004 -12.502 4.036 23.102 Atomic orbital electron populations 1.69990 1.07753 1.27382 1.52356 1.25670 0.95392 1.01957 0.95060 0.85785 0.79290 0.79479 0.78597 1.20065 1.21968 1.17334 1.20680 0.91306 0.91819 1.47777 1.19361 0.96887 0.93739 0.93270 1.21375 0.94722 0.97428 0.98525 1.21203 0.94460 0.90003 0.94010 0.92191 1.60602 1.28178 1.36604 1.05602 1.22628 0.90513 0.97442 0.98427 1.20672 0.84214 0.86749 0.98257 0.87979 1.86601 1.65275 1.43593 1.41021 1.20600 0.95777 0.97727 0.98541 1.21164 0.98861 0.96575 0.97487 1.21448 0.92264 1.00523 1.00162 1.21527 0.99573 0.96496 0.97022 1.21450 0.97796 0.97133 0.98151 1.21258 0.92411 1.00346 1.00289 1.22119 0.97909 0.97038 0.99490 1.19798 0.94639 0.96390 0.95030 0.92903 0.98460 0.95893 0.93721 0.94733 0.84208 0.90880 0.94454 0.76891 0.84920 0.84035 0.83959 0.84141 0.85163 0.93510 0.92838 0.96273 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 12.73 21.45 0.27 -55.81 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.94 43.51 27.53 68.60 1.89 45.40 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.25 -10.70 6.10 99.48 0.61 -10.09 16 7 C -0.50 -26.48 5.51 -16.17 -0.09 -26.57 16 8 C 0.01 0.28 5.97 30.11 0.18 0.46 16 9 C -0.08 -3.57 5.54 30.66 0.17 -3.40 16 10 C 0.11 4.16 2.36 44.89 0.11 4.26 16 11 H 0.06 2.27 7.79 -2.39 -0.02 2.25 16 12 N -0.68 -20.61 6.19 -491.71 -3.04 -23.65 16 13 C 0.04 0.98 5.10 86.30 0.44 1.42 16 14 C 0.16 3.49 3.39 29.85 0.10 3.59 16 15 H 0.10 2.21 8.00 -2.39 -0.02 2.19 16 16 O -0.56 -13.22 13.13 -148.98 -1.96 -15.18 16 17 C -0.13 -2.49 4.97 -19.87 -0.10 -2.58 16 18 C -0.12 -2.17 9.32 22.27 0.21 -1.97 16 19 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 20 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 21 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 22 C -0.12 -2.30 9.67 22.27 0.22 -2.08 16 23 C -0.13 -4.82 5.20 30.67 0.16 -4.66 16 24 C -0.02 -0.93 5.59 30.12 0.17 -0.76 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.02 1.31 7.07 -2.39 -0.02 1.29 16 28 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.34 9.94 8.48 -89.69 -0.76 9.18 16 31 H 0.07 1.80 8.05 -2.38 -0.02 1.78 16 32 H 0.04 0.93 7.35 -2.39 -0.02 0.92 16 33 H 0.38 6.80 7.50 -74.05 -0.56 6.25 16 34 H 0.13 1.90 6.78 -2.91 -0.02 1.88 16 35 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.59 8.06 -2.92 -0.02 1.56 16 38 H 0.13 2.06 8.04 -2.91 -0.02 2.04 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.77 7.35 -2.39 -0.02 1.75 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.03 1.49 4.60 -2.39 -0.01 1.48 16 Total: -1.00 -63.98 332.34 -0.54 -64.52 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.40 Total: 20.79 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 2.69 Total: -36.07 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.77 Total: -79.46 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.96 Total: -15.18 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.89 Total: 45.40 kcal Total: -63.98 -0.54 -64.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.408 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds