Wall clock time and date at job start Mon Mar 30 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48494 * 109.47274 * 269.99728 * 3 2 1 5 5 H 1.48498 * 109.47343 * 29.99906 * 3 2 1 6 6 H 1.48504 * 109.47022 * 149.99763 * 3 2 1 7 7 C 1.37876 * 119.99964 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84930 * 0.02562 * 7 2 1 9 9 C 1.53227 * 108.53740 * 128.62730 * 8 7 2 10 10 C 1.52957 * 109.40366 * 54.63012 * 9 8 7 11 11 H 1.08990 * 109.41992 * 56.43280 * 10 9 8 12 12 N 1.46902 * 109.41075 * 176.29734 * 10 9 8 13 13 C 1.46907 * 110.99826 * 204.99404 * 12 10 9 14 14 C 1.53000 * 109.47105 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47007 * 60.00378 * 14 13 12 16 16 O 1.42899 * 109.47069 * 299.99908 * 14 13 12 17 17 C 1.50700 * 109.46697 * 180.02562 * 14 13 12 18 18 C 1.38235 * 120.00255 * 264.99641 * 17 14 13 19 19 C 1.38234 * 120.00220 * 179.97438 * 18 17 14 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38238 * 119.99747 * 359.50225 * 20 19 18 22 22 C 1.38234 * 120.00056 * 0.47382 * 21 20 19 23 23 C 1.52962 * 109.81228 * 296.39804 * 10 9 8 24 24 C 1.51269 * 120.84986 * 179.97438 * 7 2 1 25 25 H 0.97002 * 119.99562 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.62775 * 8.91081 * 8 7 2 27 27 H 1.09002 * 109.78003 * 248.43563 * 8 7 2 28 28 H 1.08997 * 109.48668 * 294.64448 * 9 8 7 29 29 H 1.09004 * 109.49022 * 174.61054 * 9 8 7 30 30 H 1.00894 * 111.00353 * 328.94853 * 12 10 9 31 31 H 1.09000 * 109.46806 * 59.99630 * 13 12 10 32 32 H 1.08997 * 109.47117 * 300.00064 * 13 12 10 33 33 H 0.96697 * 114.00203 * 300.00722 * 16 14 13 34 34 H 1.07999 * 119.99770 * 0.02562 * 18 17 14 35 35 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 37 37 H 1.08004 * 120.00382 * 180.25932 * 21 20 19 38 38 H 1.08001 * 120.00294 * 179.78846 * 22 21 20 39 39 H 1.09004 * 109.47978 * 183.58038 * 23 10 9 40 40 H 1.08998 * 109.48235 * 303.61905 * 23 10 9 41 41 H 1.09000 * 109.62286 * 351.09112 * 24 7 2 42 42 H 1.08997 * 109.62206 * 111.65860 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3826 -1.1340 10 6 3.3399 -3.5071 -0.9828 11 1 3.5739 -3.9111 0.0020 12 7 3.8612 -4.4101 -2.0176 13 6 5.1271 -5.0225 -1.5927 14 6 5.6374 -5.9546 -2.6935 15 1 5.7991 -5.3831 -3.6075 16 8 4.6709 -6.9787 -2.9365 17 6 6.9358 -6.5833 -2.2573 18 6 8.1390 -6.0176 -2.6355 19 6 9.3299 -6.5939 -2.2349 20 6 9.3177 -7.7393 -1.4612 21 6 8.1143 -8.3026 -1.0794 22 6 6.9234 -7.7260 -1.4795 23 6 3.9906 -2.1311 -1.1340 24 6 3.5171 -1.2165 0.0000 25 1 -0.4849 0.8401 -0.0004 26 1 0.2036 -2.3409 -0.1589 27 1 1.4169 -3.0207 0.9546 28 1 1.5898 -2.9198 -2.0929 29 1 1.3706 -4.3733 -1.0890 30 1 3.1810 -5.1155 -2.2580 31 1 4.9654 -5.5943 -0.6789 32 1 5.8642 -4.2414 -1.4069 33 1 4.4771 -7.5279 -2.1646 34 1 8.1487 -5.1248 -3.2432 35 1 10.2700 -6.1517 -2.5301 36 1 10.2481 -8.1922 -1.1519 37 1 8.1046 -9.1952 -0.4713 38 1 5.9833 -8.1679 -1.1841 39 1 5.0748 -2.2347 -1.0889 40 1 3.7063 -1.6979 -2.0930 41 1 3.8981 -0.2078 -0.1599 42 1 3.8778 -1.6002 0.9543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252003888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:55 Heat of formation + Delta-G solvation = -44.021769 kcal Electronic energy + Delta-G solvation = -20990.199683 eV Core-core repulsion = 17933.816988 eV Total energy + Delta-G solvation = -3056.382696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87261 -37.86846 -36.75691 -33.94888 -32.07957 -31.26908 -31.06517 -29.67009 -28.06027 -25.94215 -23.21922 -22.77618 -21.53515 -21.25861 -20.95387 -19.10917 -17.79479 -16.34578 -16.04805 -15.95922 -15.50105 -14.80436 -14.44581 -14.37084 -14.02414 -13.66382 -13.52643 -13.26618 -12.92205 -12.61712 -12.54053 -12.03209 -11.94913 -11.78441 -11.40722 -11.33161 -11.12700 -10.84359 -10.75865 -10.50983 -10.10489 -10.04025 -9.89061 -9.48935 -9.14855 -8.98720 -8.81980 -8.60148 -8.43276 -7.92510 -6.06609 -3.96643 1.10117 1.17473 3.29906 3.38076 3.39816 3.52471 4.23467 4.35667 4.41775 4.63352 4.74563 4.83627 4.94946 5.09492 5.15993 5.23722 5.30597 5.36050 5.67944 5.75074 5.75327 5.85161 5.95452 5.97880 6.22015 6.26813 6.27928 6.39966 6.58122 6.71420 6.75829 6.83119 6.86094 6.99350 7.09632 7.13937 7.46301 7.49099 7.59694 7.71036 7.78357 7.86524 7.92539 8.43278 9.00829 9.58608 11.03264 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.003563 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.983388 B = 7856.104243 C = 8382.135136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.485 4.485 8 C 0.012 3.988 9 C -0.108 4.108 10 C 0.101 3.899 11 H 0.029 0.971 12 N -0.686 5.686 13 C 0.036 3.964 14 C 0.148 3.852 15 H 0.115 0.885 16 O -0.552 6.552 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.092 4.092 24 C -0.017 4.017 25 H 0.263 0.737 26 H 0.057 0.943 27 H 0.000 1.000 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.340 0.660 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.369 0.631 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 -14.583 -3.320 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.504 4.504 8 C -0.026 4.026 9 C -0.146 4.146 10 C -0.007 4.007 11 H 0.047 0.953 12 N -0.318 5.318 13 C -0.094 4.094 14 C 0.089 3.911 15 H 0.133 0.867 16 O -0.357 6.357 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.055 4.055 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.159 0.841 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.216 0.784 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 15.413 -13.698 -4.273 21.059 hybrid contribution 0.261 0.049 1.269 1.296 sum 15.674 -13.649 -3.004 21.000 Atomic orbital electron populations 1.69842 1.06157 1.26851 1.50114 1.24851 0.94720 0.98578 0.94643 0.86651 0.79880 0.83308 0.78457 1.20368 1.21717 1.19290 1.20033 0.89367 0.91443 1.49601 1.19350 0.98676 0.92956 0.91633 1.21803 0.92675 0.97922 1.02211 1.21452 0.95759 0.92833 0.90688 0.95252 1.60541 1.05355 1.22532 1.43363 1.22587 0.94639 0.97168 0.94976 1.20960 0.83568 0.87130 0.99473 0.86689 1.86653 1.61478 1.47432 1.40100 1.20635 0.96127 0.96237 0.98081 1.21047 0.91805 0.99916 0.99926 1.21163 0.98066 0.96141 0.98280 1.21166 0.97987 0.96432 0.98638 1.21114 0.92474 1.00020 1.00025 1.20885 0.98285 0.95948 0.97998 1.21540 0.96059 0.94721 1.00701 1.19763 0.96730 0.95176 0.93819 0.92657 0.92399 0.98138 0.92337 0.95510 0.84142 0.95523 0.90175 0.78364 0.85676 0.85956 0.86155 0.86048 0.86287 0.95439 0.92461 0.95213 0.96885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 12.73 55.43 0.71 -25.29 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.45 27.27 -169.99 -4.64 16.82 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.27 6.46 56.52 0.37 -5.91 16 7 C -0.49 -12.99 5.51 -98.92 -0.55 -13.53 16 8 C 0.01 0.30 5.97 -27.49 -0.16 0.13 16 9 C -0.11 -2.32 5.24 -26.64 -0.14 -2.46 16 10 C 0.10 1.97 2.39 -67.75 -0.16 1.81 16 11 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 12 N -0.69 -11.21 6.31 -106.77 -0.67 -11.88 16 13 C 0.04 0.50 5.17 -3.82 -0.02 0.48 16 14 C 0.15 1.75 3.49 -27.88 -0.10 1.65 16 15 H 0.12 1.43 8.05 -51.93 -0.42 1.01 16 16 O -0.55 -6.52 12.47 -35.23 -0.44 -6.96 16 17 C -0.11 -1.19 5.00 -104.62 -0.52 -1.72 16 18 C -0.11 -1.12 9.68 -39.58 -0.38 -1.50 16 19 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.11 -1.11 9.33 -39.58 -0.37 -1.48 16 23 C -0.09 -1.93 5.45 -26.65 -0.15 -2.08 16 24 C -0.02 -0.40 5.59 -27.51 -0.15 -0.55 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 27 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 30 H 0.34 5.34 7.68 -39.30 -0.30 5.04 16 31 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 32 H 0.08 1.15 7.35 -51.93 -0.38 0.77 16 33 H 0.37 3.20 7.39 45.56 0.34 3.54 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.12 0.95 6.61 -52.49 -0.35 0.61 16 39 H 0.03 0.52 7.35 -51.93 -0.38 0.14 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -29.74 331.18 -9.95 -39.69 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.90 Total: 4.34 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -3.99 Total: -21.71 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.03 Total: -37.17 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.44 Total: -6.96 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.64 Total: 16.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.74 -9.95 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.333 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds