Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48494 * 109.47274 * 269.99728 * 3 2 1 5 5 H 1.48498 * 109.47343 * 29.99906 * 3 2 1 6 6 H 1.48504 * 109.47022 * 149.99763 * 3 2 1 7 7 C 1.37876 * 119.99964 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84930 * 0.02562 * 7 2 1 9 9 C 1.53227 * 108.53740 * 128.62730 * 8 7 2 10 10 C 1.52957 * 109.40366 * 54.63012 * 9 8 7 11 11 H 1.08990 * 109.41992 * 56.43280 * 10 9 8 12 12 N 1.46902 * 109.41075 * 176.29734 * 10 9 8 13 13 C 1.46907 * 110.99826 * 204.99404 * 12 10 9 14 14 C 1.53000 * 109.47105 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47007 * 60.00378 * 14 13 12 16 16 O 1.42899 * 109.47069 * 299.99908 * 14 13 12 17 17 C 1.50700 * 109.46697 * 180.02562 * 14 13 12 18 18 C 1.38235 * 120.00255 * 264.99641 * 17 14 13 19 19 C 1.38234 * 120.00220 * 179.97438 * 18 17 14 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38238 * 119.99747 * 359.50225 * 20 19 18 22 22 C 1.38234 * 120.00056 * 0.47382 * 21 20 19 23 23 C 1.52962 * 109.81228 * 296.39804 * 10 9 8 24 24 C 1.51269 * 120.84986 * 179.97438 * 7 2 1 25 25 H 0.97002 * 119.99562 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.62775 * 8.91081 * 8 7 2 27 27 H 1.09002 * 109.78003 * 248.43563 * 8 7 2 28 28 H 1.08997 * 109.48668 * 294.64448 * 9 8 7 29 29 H 1.09004 * 109.49022 * 174.61054 * 9 8 7 30 30 H 1.00894 * 111.00353 * 328.94853 * 12 10 9 31 31 H 1.09000 * 109.46806 * 59.99630 * 13 12 10 32 32 H 1.08997 * 109.47117 * 300.00064 * 13 12 10 33 33 H 0.96697 * 114.00203 * 300.00722 * 16 14 13 34 34 H 1.07999 * 119.99770 * 0.02562 * 18 17 14 35 35 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 37 37 H 1.08004 * 120.00382 * 180.25932 * 21 20 19 38 38 H 1.08001 * 120.00294 * 179.78846 * 22 21 20 39 39 H 1.09004 * 109.47978 * 183.58038 * 23 10 9 40 40 H 1.08998 * 109.48235 * 303.61905 * 23 10 9 41 41 H 1.09000 * 109.62286 * 351.09112 * 24 7 2 42 42 H 1.08997 * 109.62206 * 111.65860 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3826 -1.1340 10 6 3.3399 -3.5071 -0.9828 11 1 3.5739 -3.9111 0.0020 12 7 3.8612 -4.4101 -2.0176 13 6 5.1271 -5.0225 -1.5927 14 6 5.6374 -5.9546 -2.6935 15 1 5.7991 -5.3831 -3.6075 16 8 4.6709 -6.9787 -2.9365 17 6 6.9358 -6.5833 -2.2573 18 6 8.1390 -6.0176 -2.6355 19 6 9.3299 -6.5939 -2.2349 20 6 9.3177 -7.7393 -1.4612 21 6 8.1143 -8.3026 -1.0794 22 6 6.9234 -7.7260 -1.4795 23 6 3.9906 -2.1311 -1.1340 24 6 3.5171 -1.2165 0.0000 25 1 -0.4849 0.8401 -0.0004 26 1 0.2036 -2.3409 -0.1589 27 1 1.4169 -3.0207 0.9546 28 1 1.5898 -2.9198 -2.0929 29 1 1.3706 -4.3733 -1.0890 30 1 3.1810 -5.1155 -2.2580 31 1 4.9654 -5.5943 -0.6789 32 1 5.8642 -4.2414 -1.4069 33 1 4.4771 -7.5279 -2.1646 34 1 8.1487 -5.1248 -3.2432 35 1 10.2700 -6.1517 -2.5301 36 1 10.2481 -8.1922 -1.1519 37 1 8.1046 -9.1952 -0.4713 38 1 5.9833 -8.1679 -1.1841 39 1 5.0748 -2.2347 -1.0889 40 1 3.7063 -1.6979 -2.0930 41 1 3.8981 -0.2078 -0.1599 42 1 3.8778 -1.6002 0.9543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252003888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = -63.230591 kcal Electronic energy + Delta-G solvation = -20991.032640 eV Core-core repulsion = 17933.816988 eV Total energy + Delta-G solvation = -3057.215653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66204 -39.25637 -37.89551 -35.54810 -33.51921 -32.48129 -31.74023 -31.48723 -29.50292 -27.34961 -24.40539 -23.48641 -23.28068 -22.90099 -21.89447 -20.84180 -18.57880 -18.07389 -17.15644 -16.88613 -16.52967 -16.39270 -15.67092 -15.60006 -15.14102 -14.93641 -14.64930 -14.44327 -14.31556 -14.21330 -13.83352 -13.63863 -13.22262 -13.12246 -12.73860 -12.63958 -12.58115 -12.29667 -12.07952 -11.88052 -11.81264 -11.73606 -11.37080 -11.11853 -10.74295 -10.54050 -10.48419 -9.83164 -9.65876 -9.28299 -8.16657 -6.10259 0.39196 0.49256 1.38589 1.40698 1.49813 2.41323 2.79624 3.06182 3.23087 3.51322 3.87805 3.94646 4.04002 4.11356 4.16931 4.23678 4.29570 4.29983 4.57941 4.60894 4.64772 4.74084 4.78523 4.93584 4.96441 5.05310 5.06415 5.13367 5.16729 5.22525 5.25919 5.29115 5.55158 5.61550 5.62816 5.63536 5.65666 5.76885 5.89010 6.09687 6.20193 6.37079 6.56864 6.73674 6.96148 7.47504 8.94631 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.003563 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.983388 B = 7856.104243 C = 8382.135136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.018 3.982 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.498 4.498 8 C 0.008 3.992 9 C -0.098 4.098 10 C 0.112 3.888 11 H 0.028 0.972 12 N -0.686 5.686 13 C 0.041 3.959 14 C 0.161 3.839 15 H 0.106 0.894 16 O -0.563 6.563 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.086 4.086 24 C -0.019 4.019 25 H 0.262 0.738 26 H 0.025 0.975 27 H -0.002 1.002 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.346 0.654 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.382 0.618 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.031 0.969 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.763 -15.807 -3.347 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.180 4.180 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.178 1.178 7 C -0.517 4.517 8 C -0.030 4.030 9 C -0.136 4.136 10 C 0.003 3.997 11 H 0.046 0.954 12 N -0.318 5.318 13 C -0.089 4.089 14 C 0.101 3.899 15 H 0.124 0.876 16 O -0.370 6.370 17 C -0.126 4.126 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.125 4.125 24 C -0.057 4.057 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.165 0.835 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 17.919 -14.945 -4.298 23.726 hybrid contribution -0.496 0.316 1.305 1.431 sum 17.423 -14.630 -2.993 22.947 Atomic orbital electron populations 1.69982 1.07696 1.27419 1.52285 1.25648 0.95403 1.01932 0.94982 0.85776 0.79203 0.79529 0.78621 1.19972 1.21834 1.17766 1.20669 0.91291 0.91850 1.47934 1.19318 0.96978 0.93712 0.92998 1.21606 0.94507 0.98038 0.99458 1.21169 0.93976 0.92980 0.91539 0.95366 1.60421 1.06367 1.22920 1.42120 1.22605 0.92945 0.97317 0.96022 1.20707 0.84111 0.86794 0.98246 0.87638 1.86621 1.61551 1.47592 1.41237 1.20582 0.95651 0.97087 0.99307 1.21252 0.92207 1.00414 1.00380 1.21454 0.98483 0.96371 0.98155 1.21529 0.98990 0.96154 0.97936 1.21443 0.92280 1.00663 1.00013 1.21143 0.99453 0.95751 0.97837 1.21427 0.97570 0.94830 0.98673 1.19783 0.94674 0.96100 0.95119 0.92866 0.95671 0.98386 0.94030 0.93266 0.83505 0.94813 0.90710 0.76802 0.85225 0.84129 0.83928 0.84007 0.84887 0.93056 0.93820 0.95099 0.96441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 12.73 21.45 0.27 -55.72 16 2 C 0.02 1.01 5.46 84.65 0.46 1.48 16 3 Si 0.94 44.09 27.27 68.60 1.87 45.96 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.25 -11.15 6.46 99.48 0.64 -10.50 16 7 C -0.50 -26.78 5.51 -16.17 -0.09 -26.87 16 8 C 0.01 0.41 5.97 30.10 0.18 0.59 16 9 C -0.10 -4.16 5.24 30.66 0.16 -3.99 16 10 C 0.11 4.21 2.39 44.89 0.11 4.32 16 11 H 0.03 1.08 7.80 -2.39 -0.02 1.06 16 12 N -0.69 -21.11 6.31 -491.70 -3.10 -24.21 16 13 C 0.04 1.03 5.17 86.30 0.45 1.47 16 14 C 0.16 3.53 3.49 29.85 0.10 3.63 16 15 H 0.11 2.50 8.05 -2.39 -0.02 2.48 16 16 O -0.56 -12.24 12.47 -148.98 -1.86 -14.10 16 17 C -0.13 -2.51 5.00 -19.87 -0.10 -2.60 16 18 C -0.12 -2.35 9.68 22.27 0.22 -2.14 16 19 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 20 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 21 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 22 C -0.12 -2.16 9.33 22.27 0.21 -1.95 16 23 C -0.09 -3.50 5.45 30.64 0.17 -3.33 16 24 C -0.02 -0.86 5.59 30.09 0.17 -0.70 16 25 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.02 1.42 7.07 -2.38 -0.02 1.41 16 27 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.84 8.05 -2.38 -0.02 1.82 16 30 H 0.35 10.15 7.68 -89.70 -0.69 9.46 16 31 H 0.03 0.82 8.05 -2.39 -0.02 0.80 16 32 H 0.07 1.99 7.35 -2.39 -0.02 1.97 16 33 H 0.38 5.79 7.39 -74.06 -0.55 5.24 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.13 1.81 6.61 -2.91 -0.02 1.79 16 39 H 0.05 1.83 7.35 -2.38 -0.02 1.81 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.03 1.40 4.78 -2.39 -0.01 1.39 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -63.80 331.18 -0.39 -64.19 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.28 Total: 19.18 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 2.70 Total: -35.31 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.83 Total: -79.93 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.86 Total: -14.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.87 Total: 45.96 kcal Total: -63.80 -0.39 -64.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.963 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds