Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48495 * 109.47004 * 240.00196 * 3 2 1 5 5 H 1.48496 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46886 * 120.00173 * 3 2 1 7 7 C 1.37878 * 120.00263 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85148 * 180.02562 * 7 2 1 9 9 C 1.53229 * 108.53677 * 231.32305 * 8 7 2 10 10 C 1.52949 * 109.40398 * 305.37322 * 9 8 7 11 11 H 1.09004 * 109.41689 * 303.49000 * 10 9 8 12 12 N 1.46902 * 109.41194 * 183.70349 * 10 9 8 13 13 C 1.46905 * 110.99861 * 84.64915 * 12 10 9 14 14 C 1.53000 * 109.47021 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.47055 * 59.99958 * 14 13 12 16 16 O 1.42902 * 109.47565 * 300.00114 * 14 13 12 17 17 C 1.50699 * 109.47111 * 179.97438 * 14 13 12 18 18 C 1.38236 * 119.99602 * 84.73147 * 17 14 13 19 19 C 1.38235 * 119.99798 * 179.80649 * 18 17 14 20 20 C 1.38236 * 120.00108 * 0.42557 * 19 18 17 21 21 C 1.38237 * 119.99732 * 359.80403 * 20 19 18 22 22 C 1.38228 * 120.00265 * 265.00309 * 17 14 13 23 23 C 1.52957 * 109.81964 * 63.60062 * 10 9 8 24 24 C 1.51267 * 120.84509 * 359.97438 * 7 2 1 25 25 H 0.96996 * 120.00466 * 359.97438 * 1 2 3 26 26 H 1.09010 * 109.62574 * 111.60798 * 8 7 2 27 27 H 1.09000 * 109.78466 * 351.13797 * 8 7 2 28 28 H 1.09000 * 109.47850 * 185.39216 * 9 8 7 29 29 H 1.08994 * 109.49134 * 65.36182 * 9 8 7 30 30 H 1.00901 * 110.99901 * 208.59889 * 12 10 9 31 31 H 1.08994 * 109.47076 * 299.99954 * 13 12 10 32 32 H 1.09000 * 109.47496 * 60.00249 * 13 12 10 33 33 H 0.96699 * 113.99264 * 300.00054 * 16 14 13 34 34 H 1.07998 * 120.00167 * 359.97438 * 18 17 14 35 35 H 1.08004 * 119.99932 * 180.20720 * 19 18 17 36 36 H 1.07999 * 119.99752 * 179.79225 * 20 19 18 37 37 H 1.08000 * 119.99548 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00358 * 359.97438 * 22 17 14 39 39 H 1.09004 * 109.48477 * 176.42400 * 23 10 9 40 40 H 1.09001 * 109.48481 * 56.37588 * 23 10 9 41 41 H 1.08991 * 109.63053 * 8.96186 * 24 7 2 42 42 H 1.09003 * 109.62740 * 248.38663 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9911 -2.1307 -1.1346 10 6 3.3403 -3.5066 -0.9840 11 1 3.5739 -3.9122 0.0004 12 7 3.8621 -4.4094 -2.0188 13 6 5.1278 -5.0219 -1.5936 14 6 5.6386 -5.9537 -2.6944 15 1 5.8006 -5.3819 -3.6082 16 8 4.6722 -6.9777 -2.9383 17 6 6.9374 -6.5815 -2.2584 18 6 6.9257 -7.7208 -1.4756 19 6 8.1170 -8.2991 -1.0790 20 6 9.3200 -7.7331 -1.4579 21 6 9.3315 -6.5911 -2.2368 22 6 8.1402 -6.0151 -2.6366 23 6 1.8234 -3.3823 -1.1358 24 6 1.2677 -2.5151 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.8771 -1.6006 0.9545 27 1 3.9010 -0.2085 -0.1571 28 1 5.0752 -2.2343 -1.0890 29 1 3.7073 -1.6973 -2.0935 30 1 3.1820 -5.1147 -2.2597 31 1 5.8648 -4.2408 -1.4072 32 1 4.9658 -5.5940 -0.6801 33 1 4.4782 -7.5271 -2.1666 34 1 5.9859 -8.1607 -1.1761 35 1 8.1080 -9.1911 -0.4702 36 1 10.2506 -8.1830 -1.1452 37 1 10.2713 -6.1487 -2.5324 38 1 8.1493 -5.1227 -3.2449 39 1 1.3711 -4.3730 -1.0910 40 1 1.5907 -2.9191 -2.0946 41 1 0.2036 -2.3409 -0.1600 42 1 1.4199 -3.0193 0.9538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252003890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -45.316866 kcal Electronic energy + Delta-G solvation = -20989.762887 eV Core-core repulsion = 17933.324032 eV Total energy + Delta-G solvation = -3056.438855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87331 -37.87107 -36.75819 -33.95149 -32.08280 -31.27258 -31.06651 -29.66966 -28.06194 -25.94312 -23.22067 -22.77688 -21.53668 -21.26452 -20.95439 -19.11662 -17.79399 -16.33917 -16.04935 -15.95179 -15.50262 -14.79920 -14.46160 -14.37118 -14.02608 -13.66469 -13.52772 -13.26213 -12.91944 -12.63604 -12.53315 -12.03638 -11.94112 -11.78852 -11.36933 -11.31734 -11.12031 -10.84008 -10.71495 -10.53147 -10.10734 -10.07635 -9.93080 -9.59584 -9.14932 -8.98649 -8.82491 -8.62627 -8.43725 -7.93196 -6.06834 -3.97100 1.10031 1.17378 3.31683 3.37884 3.39610 3.52372 4.23315 4.35555 4.41815 4.63309 4.74488 4.83431 4.94731 5.09296 5.15729 5.23453 5.30475 5.35940 5.67744 5.74792 5.75223 5.84867 5.95236 5.97133 6.21916 6.26085 6.27858 6.39876 6.57372 6.70199 6.75750 6.81984 6.85614 6.98176 7.08396 7.10552 7.46094 7.47820 7.59194 7.69948 7.78064 7.86181 7.92148 8.42756 9.00099 9.58174 11.03138 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.003564 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.676138 B = 7854.136075 C = 8380.098964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.487 4.487 8 C -0.012 4.012 9 C -0.091 4.091 10 C 0.101 3.899 11 H 0.030 0.970 12 N -0.686 5.686 13 C 0.036 3.964 14 C 0.148 3.852 15 H 0.115 0.885 16 O -0.551 6.551 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.108 4.108 24 C 0.012 3.988 25 H 0.264 0.736 26 H 0.014 0.986 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.340 0.660 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.369 0.631 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.026 0.974 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.247 -14.656 -3.316 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.506 4.506 8 C -0.050 4.050 9 C -0.130 4.130 10 C -0.007 4.007 11 H 0.048 0.952 12 N -0.318 5.318 13 C -0.094 4.094 14 C 0.089 3.911 15 H 0.133 0.867 16 O -0.356 6.356 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.026 4.026 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.216 0.784 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 15.379 -13.770 -4.269 21.080 hybrid contribution 0.291 0.068 1.280 1.314 sum 15.671 -13.702 -2.990 21.029 Atomic orbital electron populations 1.69818 1.06150 1.27003 1.49983 1.24840 0.94728 0.98545 0.94596 0.86651 0.79392 0.83034 0.78960 1.19920 1.21894 1.20132 1.20021 0.89306 0.91496 1.49761 1.19644 0.96750 0.94711 0.93888 1.21534 0.96072 0.94710 1.00687 1.21447 0.95762 0.92801 0.90698 0.95240 1.60539 1.05370 1.22546 1.43345 1.22587 0.94636 0.97169 0.94980 1.20959 0.83575 0.87134 0.99473 0.86697 1.86656 1.61477 1.47419 1.40097 1.20632 0.96126 0.96269 0.98051 1.20885 0.98281 0.95980 0.97967 1.21114 0.92475 0.99976 1.00069 1.21167 0.97992 0.96454 0.98607 1.21164 0.98062 0.96180 0.98245 1.21044 0.91806 0.99878 0.99962 1.21815 0.92661 0.97936 1.02219 1.19360 0.98674 0.92928 0.91629 0.92571 0.96799 0.95769 0.95413 0.92422 0.84128 0.90176 0.95515 0.78368 0.86289 0.86048 0.86154 0.85956 0.85676 0.95492 0.92324 0.92352 0.98107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 12.73 55.43 0.71 -25.29 16 2 C 0.08 2.09 5.46 -17.82 -0.10 2.00 16 3 Si 0.89 21.63 26.80 -169.99 -4.56 17.08 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.49 -13.03 5.51 -98.93 -0.55 -13.58 16 8 C -0.01 -0.28 5.58 -27.49 -0.15 -0.44 16 9 C -0.09 -1.93 5.45 -26.64 -0.15 -2.07 16 10 C 0.10 1.97 2.39 -67.76 -0.16 1.81 16 11 H 0.03 0.59 7.79 -51.93 -0.40 0.19 16 12 N -0.69 -11.19 6.31 -106.77 -0.67 -11.86 16 13 C 0.04 0.50 5.17 -3.82 -0.02 0.48 16 14 C 0.15 1.74 3.48 -27.88 -0.10 1.65 16 15 H 0.12 1.43 8.05 -51.93 -0.42 1.01 16 16 O -0.55 -6.51 12.48 -35.23 -0.44 -6.95 16 17 C -0.11 -1.19 5.00 -104.63 -0.52 -1.72 16 18 C -0.11 -1.11 9.33 -39.58 -0.37 -1.48 16 19 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.11 -1.11 9.68 -39.59 -0.38 -1.50 16 23 C -0.11 -2.32 5.24 -26.61 -0.14 -2.46 16 24 C 0.01 0.30 5.97 -27.46 -0.16 0.14 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.02 0.57 5.18 -51.93 -0.27 0.30 16 28 H 0.03 0.53 7.35 -51.93 -0.38 0.14 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.34 5.33 7.68 -39.29 -0.30 5.03 16 31 H 0.08 1.15 7.35 -51.93 -0.38 0.77 16 32 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.37 3.19 7.40 45.56 0.34 3.53 16 34 H 0.12 0.95 6.62 -52.49 -0.35 0.60 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.03 0.51 8.05 -51.93 -0.42 0.10 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 42 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -29.73 331.77 -9.85 -39.58 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.89 Total: 4.05 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.99 Total: -21.59 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.03 Total: -37.16 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.44 Total: -6.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.56 Total: 17.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.73 -9.85 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.741 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds