Wall clock time and date at job start Mon Mar 30 2020 01:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48495 * 109.47004 * 240.00196 * 3 2 1 5 5 H 1.48496 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46886 * 120.00173 * 3 2 1 7 7 C 1.37878 * 120.00263 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85148 * 180.02562 * 7 2 1 9 9 C 1.53229 * 108.53677 * 231.32305 * 8 7 2 10 10 C 1.52949 * 109.40398 * 305.37322 * 9 8 7 11 11 H 1.09004 * 109.41689 * 303.49000 * 10 9 8 12 12 N 1.46902 * 109.41194 * 183.70349 * 10 9 8 13 13 C 1.46905 * 110.99861 * 84.64915 * 12 10 9 14 14 C 1.53000 * 109.47021 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.47055 * 59.99958 * 14 13 12 16 16 O 1.42902 * 109.47565 * 300.00114 * 14 13 12 17 17 C 1.50699 * 109.47111 * 179.97438 * 14 13 12 18 18 C 1.38236 * 119.99602 * 84.73147 * 17 14 13 19 19 C 1.38235 * 119.99798 * 179.80649 * 18 17 14 20 20 C 1.38236 * 120.00108 * 0.42557 * 19 18 17 21 21 C 1.38237 * 119.99732 * 359.80403 * 20 19 18 22 22 C 1.38228 * 120.00265 * 265.00309 * 17 14 13 23 23 C 1.52957 * 109.81964 * 63.60062 * 10 9 8 24 24 C 1.51267 * 120.84509 * 359.97438 * 7 2 1 25 25 H 0.96996 * 120.00466 * 359.97438 * 1 2 3 26 26 H 1.09010 * 109.62574 * 111.60798 * 8 7 2 27 27 H 1.09000 * 109.78466 * 351.13797 * 8 7 2 28 28 H 1.09000 * 109.47850 * 185.39216 * 9 8 7 29 29 H 1.08994 * 109.49134 * 65.36182 * 9 8 7 30 30 H 1.00901 * 110.99901 * 208.59889 * 12 10 9 31 31 H 1.08994 * 109.47076 * 299.99954 * 13 12 10 32 32 H 1.09000 * 109.47496 * 60.00249 * 13 12 10 33 33 H 0.96699 * 113.99264 * 300.00054 * 16 14 13 34 34 H 1.07998 * 120.00167 * 359.97438 * 18 17 14 35 35 H 1.08004 * 119.99932 * 180.20720 * 19 18 17 36 36 H 1.07999 * 119.99752 * 179.79225 * 20 19 18 37 37 H 1.08000 * 119.99548 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00358 * 359.97438 * 22 17 14 39 39 H 1.09004 * 109.48477 * 176.42400 * 23 10 9 40 40 H 1.09001 * 109.48481 * 56.37588 * 23 10 9 41 41 H 1.08991 * 109.63053 * 8.96186 * 24 7 2 42 42 H 1.09003 * 109.62740 * 248.38663 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9911 -2.1307 -1.1346 10 6 3.3403 -3.5066 -0.9840 11 1 3.5739 -3.9122 0.0004 12 7 3.8621 -4.4094 -2.0188 13 6 5.1278 -5.0219 -1.5936 14 6 5.6386 -5.9537 -2.6944 15 1 5.8006 -5.3819 -3.6082 16 8 4.6722 -6.9777 -2.9383 17 6 6.9374 -6.5815 -2.2584 18 6 6.9257 -7.7208 -1.4756 19 6 8.1170 -8.2991 -1.0790 20 6 9.3200 -7.7331 -1.4579 21 6 9.3315 -6.5911 -2.2368 22 6 8.1402 -6.0151 -2.6366 23 6 1.8234 -3.3823 -1.1358 24 6 1.2677 -2.5151 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.8771 -1.6006 0.9545 27 1 3.9010 -0.2085 -0.1571 28 1 5.0752 -2.2343 -1.0890 29 1 3.7073 -1.6973 -2.0935 30 1 3.1820 -5.1147 -2.2597 31 1 5.8648 -4.2408 -1.4072 32 1 4.9658 -5.5940 -0.6801 33 1 4.4782 -7.5271 -2.1666 34 1 5.9859 -8.1607 -1.1761 35 1 8.1080 -9.1911 -0.4702 36 1 10.2506 -8.1830 -1.1452 37 1 10.2713 -6.1487 -2.5324 38 1 8.1493 -5.1227 -3.2449 39 1 1.3711 -4.3730 -1.0910 40 1 1.5907 -2.9191 -2.0946 41 1 0.2036 -2.3409 -0.1600 42 1 1.4199 -3.0193 0.9538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252003890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:57 Heat of formation + Delta-G solvation = -64.581231 kcal Electronic energy + Delta-G solvation = -20990.598253 eV Core-core repulsion = 17933.324032 eV Total energy + Delta-G solvation = -3057.274221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.66147 -39.25710 -37.89471 -35.55007 -33.52269 -32.48304 -31.74060 -31.48335 -29.50328 -27.34879 -24.40452 -23.48697 -23.28276 -22.90133 -21.89434 -20.84649 -18.57651 -18.05866 -17.15483 -16.88429 -16.52574 -16.41763 -15.66848 -15.59517 -15.13594 -14.93558 -14.64235 -14.46193 -14.30845 -14.21194 -13.83629 -13.63863 -13.19895 -13.09822 -12.72076 -12.64214 -12.53226 -12.32425 -12.08662 -11.90033 -11.86744 -11.73919 -11.47253 -11.11618 -10.75628 -10.55249 -10.49795 -9.83151 -9.65885 -9.28327 -8.17236 -6.10732 0.39215 0.49253 1.39081 1.39906 1.48118 2.40622 2.79600 3.05395 3.23039 3.51428 3.87766 3.94681 4.04071 4.11258 4.16835 4.23529 4.29406 4.29758 4.57623 4.60847 4.64786 4.73859 4.78195 4.93545 4.95044 5.04300 5.06431 5.13279 5.16708 5.21364 5.25422 5.26922 5.55154 5.61571 5.62386 5.62793 5.65684 5.76511 5.88671 6.09699 6.20123 6.36479 6.56940 6.73790 6.95384 7.46922 8.94081 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.003564 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.676138 B = 7854.136075 C = 8380.098964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.020 3.980 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.500 4.500 8 C -0.015 4.015 9 C -0.086 4.086 10 C 0.113 3.887 11 H 0.029 0.971 12 N -0.686 5.686 13 C 0.041 3.959 14 C 0.161 3.839 15 H 0.106 0.894 16 O -0.563 6.563 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.098 4.098 24 C 0.008 3.992 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.346 0.654 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.382 0.618 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.025 0.975 42 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.697 -15.912 -3.324 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.519 4.519 8 C -0.053 4.053 9 C -0.125 4.125 10 C 0.004 3.996 11 H 0.047 0.953 12 N -0.319 5.319 13 C -0.089 4.089 14 C 0.101 3.899 15 H 0.123 0.877 16 O -0.370 6.370 17 C -0.126 4.126 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.030 4.030 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.232 0.768 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 17.850 -15.048 -4.276 23.735 hybrid contribution -0.451 0.346 1.311 1.429 sum 17.399 -14.702 -2.965 22.971 Atomic orbital electron populations 1.69958 1.07644 1.27510 1.52189 1.25620 0.95395 1.01823 0.94974 0.85790 0.78350 0.79403 0.79444 1.19116 1.22005 1.19119 1.20665 0.91255 0.91919 1.48048 1.19675 0.94691 0.95652 0.95248 1.21421 0.97599 0.94849 0.98610 1.21165 0.93980 0.92916 0.91578 0.95288 1.60418 1.06384 1.22938 1.42117 1.22606 0.92941 0.97316 0.96030 1.20706 0.84118 0.86801 0.98245 0.87665 1.86624 1.61548 1.47579 1.41237 1.20578 0.95646 0.97121 0.99272 1.21144 0.99450 0.95780 0.97800 1.21443 0.92279 1.00618 1.00056 1.21530 0.98998 0.96171 0.97911 1.21454 0.98476 0.96410 0.98126 1.21248 0.92213 1.00374 1.00420 1.21619 0.94486 0.98066 0.99457 1.19326 0.96977 0.93649 0.93018 0.92821 0.96214 0.95636 0.93015 0.93898 0.83484 0.90716 0.94776 0.76800 0.84880 0.84005 0.83930 0.84137 0.85237 0.93217 0.94035 0.95603 0.98309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 12.73 21.45 0.27 -55.66 16 2 C 0.02 1.11 5.46 84.66 0.46 1.57 16 3 Si 0.94 44.44 26.80 68.60 1.84 46.28 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.50 -26.87 5.51 -16.17 -0.09 -26.95 16 8 C -0.01 -0.68 5.58 30.10 0.17 -0.51 16 9 C -0.09 -3.49 5.45 30.65 0.17 -3.32 16 10 C 0.11 4.21 2.39 44.88 0.11 4.31 16 11 H 0.03 1.10 7.79 -2.39 -0.02 1.08 16 12 N -0.69 -21.07 6.31 -491.72 -3.10 -24.18 16 13 C 0.04 1.02 5.17 86.30 0.45 1.47 16 14 C 0.16 3.52 3.48 29.85 0.10 3.63 16 15 H 0.11 2.49 8.05 -2.39 -0.02 2.48 16 16 O -0.56 -12.21 12.48 -148.98 -1.86 -14.07 16 17 C -0.13 -2.50 5.00 -19.87 -0.10 -2.60 16 18 C -0.12 -2.16 9.33 22.27 0.21 -1.95 16 19 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 20 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 21 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 22 C -0.12 -2.35 9.68 22.27 0.22 -2.14 16 23 C -0.10 -4.15 5.24 30.67 0.16 -3.99 16 24 C 0.01 0.42 5.97 30.12 0.18 0.60 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.03 1.15 5.18 -2.39 -0.01 1.14 16 28 H 0.05 1.84 7.35 -2.39 -0.02 1.82 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.35 10.12 7.68 -89.69 -0.69 9.43 16 31 H 0.07 1.98 7.35 -2.39 -0.02 1.96 16 32 H 0.03 0.82 8.05 -2.39 -0.02 0.81 16 33 H 0.38 5.77 7.40 -74.06 -0.55 5.22 16 34 H 0.13 1.80 6.62 -2.91 -0.02 1.78 16 35 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -63.72 331.77 -0.36 -64.09 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.22 Total: 18.61 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.70 Total: -35.07 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -2.83 Total: -79.84 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -1.86 Total: -14.07 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.84 Total: 46.28 kcal Total: -63.72 -0.36 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.492 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds