Wall clock time and date at job start Mon Mar 30 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48503 * 109.47198 * 270.00373 * 3 2 1 5 5 H 1.48500 * 109.47043 * 30.00512 * 3 2 1 6 6 H 1.48505 * 109.47108 * 150.00542 * 3 2 1 7 7 C 1.37885 * 120.00078 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.84926 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53409 * 128.62738 * 8 7 2 10 10 C 1.52962 * 109.40078 * 54.62962 * 9 8 7 11 11 H 1.09000 * 109.35953 * 56.47148 * 10 9 8 12 12 N 1.46902 * 109.41291 * 176.29573 * 10 9 8 13 13 C 1.46900 * 110.99888 * 275.35364 * 12 10 9 14 14 C 1.53003 * 109.47407 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47269 * 305.00036 * 14 13 12 16 16 O 1.42903 * 109.46459 * 64.99929 * 14 13 12 17 17 C 1.50696 * 109.47222 * 184.99595 * 14 13 12 18 18 C 1.38234 * 120.00111 * 279.72695 * 17 14 13 19 19 C 1.38238 * 119.99829 * 179.78647 * 18 17 14 20 20 C 1.38239 * 119.99904 * 0.44948 * 19 18 17 21 21 C 1.38233 * 119.99728 * 359.80521 * 20 19 18 22 22 C 1.38229 * 120.00465 * 359.97438 * 21 20 19 23 23 C 1.52961 * 109.81782 * 296.39616 * 10 9 8 24 24 C 1.51268 * 120.84886 * 359.97438 * 7 2 1 25 25 H 0.97001 * 120.00139 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.62603 * 248.34650 * 8 7 2 27 27 H 1.09000 * 109.62451 * 8.72841 * 8 7 2 28 28 H 1.08995 * 109.48780 * 294.65147 * 9 8 7 29 29 H 1.09003 * 109.48339 * 174.60651 * 9 8 7 30 30 H 1.00901 * 111.00196 * 39.30029 * 12 10 9 31 31 H 1.09005 * 109.47208 * 59.99899 * 13 12 10 32 32 H 1.08999 * 109.46786 * 299.99678 * 13 12 10 33 33 H 0.96700 * 114.00311 * 60.00313 * 16 14 13 34 34 H 1.07998 * 120.00194 * 0.02562 * 18 17 14 35 35 H 1.08003 * 120.00038 * 180.27175 * 19 18 17 36 36 H 1.08001 * 119.99802 * 179.83174 * 20 19 18 37 37 H 1.08004 * 119.99346 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.00005 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.48440 * 183.57990 * 23 10 9 40 40 H 1.08999 * 109.48113 * 303.61028 * 23 10 9 41 41 H 1.09001 * 109.62318 * 111.65316 * 24 7 2 42 42 H 1.09003 * 109.62407 * 351.08895 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9903 -2.1313 1.1346 10 6 3.3395 -3.5073 0.9827 11 1 3.5740 -3.9111 -0.0022 12 7 3.8604 -4.4106 2.0175 13 6 5.1265 -5.0229 1.5930 14 6 5.6371 -5.9543 2.6942 15 1 5.7140 -5.4019 3.6307 16 8 4.7263 -7.0434 2.8570 17 6 6.9940 -6.4871 2.3124 18 6 7.0977 -7.5430 1.4263 19 6 8.3426 -8.0288 1.0727 20 6 9.4835 -7.4647 1.6123 21 6 9.3795 -6.4122 2.5023 22 6 8.1349 -5.9234 2.8525 23 6 1.8224 -3.3829 1.1334 24 6 1.2677 -2.5152 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.8779 -1.6001 -0.9543 27 1 3.8981 -0.2074 0.1567 28 1 3.7055 -1.6984 2.0935 29 1 5.0744 -2.2350 1.0899 30 1 3.9691 -3.9284 2.8971 31 1 5.8637 -4.2416 1.4077 32 1 4.9651 -5.5945 0.6791 33 1 4.6086 -7.5800 2.0612 34 1 6.2062 -7.9860 1.0074 35 1 8.4238 -8.8510 0.3770 36 1 10.4560 -7.8460 1.3380 37 1 10.2709 -5.9712 2.9236 38 1 8.0537 -5.1014 3.5482 39 1 1.3701 -4.3736 1.0878 40 1 1.5890 -2.9205 2.0924 41 1 1.4199 -3.0192 -0.9550 42 1 0.2036 -2.3409 0.1589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252003958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:01 Heat of formation + Delta-G solvation = -42.777942 kcal Electronic energy + Delta-G solvation = -20989.361573 eV Core-core repulsion = 17933.032813 eV Total energy + Delta-G solvation = -3056.328759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84145 -37.86452 -36.70916 -33.97773 -32.04865 -31.23656 -31.06530 -29.61881 -28.08070 -25.82212 -23.22362 -22.74532 -21.54650 -21.26175 -21.03834 -19.32137 -17.74577 -16.47391 -15.95731 -15.87965 -15.32078 -14.63587 -14.51527 -14.40803 -14.05075 -13.67962 -13.50720 -13.01954 -12.92680 -12.86784 -12.33658 -12.12449 -12.00412 -11.76275 -11.40985 -11.34071 -11.07065 -10.93484 -10.75111 -10.60903 -10.16202 -9.97844 -9.79980 -9.50958 -9.14916 -8.98130 -8.81638 -8.70617 -8.45804 -7.76645 -6.07024 -3.97622 1.10027 1.17274 3.27073 3.35281 3.35719 3.52692 4.25362 4.39373 4.46493 4.62152 4.74351 4.84747 4.97023 5.03101 5.17504 5.21325 5.30403 5.35941 5.70138 5.71811 5.73801 5.80760 5.92546 5.96609 6.21845 6.22808 6.27655 6.39784 6.50038 6.74325 6.75616 6.82258 6.90515 6.94293 7.07479 7.23361 7.40793 7.56565 7.61628 7.69411 7.75597 7.90479 7.94109 8.43944 9.01077 9.57290 11.02546 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.003583 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.561548 B = 7812.436758 C = 8346.735508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.485 4.485 8 C -0.017 4.017 9 C -0.133 4.133 10 C 0.100 3.900 11 H 0.062 0.938 12 N -0.681 5.681 13 C 0.034 3.966 14 C 0.150 3.850 15 H 0.103 0.897 16 O -0.542 6.542 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.092 4.092 24 C 0.008 3.992 25 H 0.263 0.737 26 H 0.014 0.986 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.335 0.665 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.371 0.629 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.036 0.964 40 H 0.047 0.953 41 H 0.001 0.999 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.300 -13.220 4.009 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.504 4.504 8 C -0.055 4.055 9 C -0.173 4.173 10 C -0.009 4.009 11 H 0.081 0.919 12 N -0.310 5.310 13 C -0.096 4.096 14 C 0.091 3.909 15 H 0.121 0.879 16 O -0.347 6.347 17 C -0.111 4.111 18 C -0.129 4.129 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.029 4.029 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.153 0.847 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.218 0.782 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.692 -13.404 4.409 21.103 hybrid contribution 1.285 1.579 -0.520 2.101 sum 16.977 -11.825 3.889 21.052 Atomic orbital electron populations 1.69838 1.06104 1.26800 1.50105 1.24853 0.94710 0.98477 0.94744 0.86702 0.79936 0.83509 0.78423 1.20485 1.21647 1.19132 1.20063 0.89241 0.91644 1.49486 1.19759 0.96912 0.95358 0.93507 1.22212 0.96250 0.97516 1.01281 1.21510 0.96533 0.89691 0.93151 0.91933 1.60734 1.26301 1.37667 1.06303 1.22607 0.91980 0.97331 0.97659 1.20832 0.83770 0.87308 0.99028 0.87875 1.86634 1.64923 1.43166 1.39960 1.20657 0.96300 0.96763 0.97410 1.20918 0.97816 0.96642 0.97541 1.21131 0.92493 1.00042 0.99934 1.21167 0.98524 0.96883 0.97632 1.21150 0.97447 0.96986 0.98134 1.21035 0.92066 0.99859 0.99912 1.21557 0.92419 0.98120 1.00965 1.19390 0.98636 0.92834 0.92075 0.92653 0.96770 0.94978 0.92930 0.95580 0.84742 0.94597 0.90993 0.78186 0.86064 0.85988 0.86156 0.86021 0.85923 0.94499 0.93429 0.98028 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 12.73 55.43 0.71 -25.22 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.22 27.53 -169.99 -4.68 16.54 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.16 6.11 56.52 0.35 -5.81 16 7 C -0.49 -12.90 5.52 -98.92 -0.55 -13.44 16 8 C -0.02 -0.40 5.59 -27.48 -0.15 -0.56 16 9 C -0.13 -2.69 5.20 -26.63 -0.14 -2.83 16 10 C 0.10 1.92 2.36 -67.75 -0.16 1.76 16 11 H 0.06 1.25 7.80 -51.93 -0.40 0.84 16 12 N -0.68 -10.98 6.19 -106.76 -0.66 -11.64 16 13 C 0.03 0.46 5.10 -3.82 -0.02 0.44 16 14 C 0.15 1.77 3.39 -27.88 -0.09 1.68 16 15 H 0.10 1.21 8.00 -51.93 -0.42 0.79 16 16 O -0.54 -6.87 13.13 -35.23 -0.46 -7.33 16 17 C -0.11 -1.20 4.97 -104.63 -0.52 -1.72 16 18 C -0.11 -1.10 9.32 -39.58 -0.37 -1.46 16 19 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 22 C -0.11 -1.12 9.67 -39.58 -0.38 -1.51 16 23 C -0.09 -2.01 5.54 -26.66 -0.15 -2.16 16 24 C 0.01 0.22 5.97 -27.51 -0.16 0.05 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.03 0.75 4.59 -51.93 -0.24 0.51 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.47 7.35 -51.93 -0.38 0.09 16 30 H 0.34 5.24 8.48 -39.29 -0.33 4.91 16 31 H 0.04 0.50 7.35 -51.93 -0.38 0.12 16 32 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.37 3.61 7.50 45.56 0.34 3.95 16 34 H 0.12 0.99 6.78 -52.49 -0.36 0.63 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -29.82 332.34 -10.03 -39.84 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.95 Total: 5.01 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.99 Total: -22.21 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.04 Total: -36.86 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.46 Total: -7.33 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.68 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.82 -10.03 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.935 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds