Wall clock time and date at job start Mon Mar 30 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48503 * 109.47198 * 270.00373 * 3 2 1 5 5 H 1.48500 * 109.47043 * 30.00512 * 3 2 1 6 6 H 1.48505 * 109.47108 * 150.00542 * 3 2 1 7 7 C 1.37885 * 120.00078 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.84926 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53409 * 128.62738 * 8 7 2 10 10 C 1.52962 * 109.40078 * 54.62962 * 9 8 7 11 11 H 1.09000 * 109.35953 * 56.47148 * 10 9 8 12 12 N 1.46902 * 109.41291 * 176.29573 * 10 9 8 13 13 C 1.46900 * 110.99888 * 275.35364 * 12 10 9 14 14 C 1.53003 * 109.47407 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47269 * 305.00036 * 14 13 12 16 16 O 1.42903 * 109.46459 * 64.99929 * 14 13 12 17 17 C 1.50696 * 109.47222 * 184.99595 * 14 13 12 18 18 C 1.38234 * 120.00111 * 279.72695 * 17 14 13 19 19 C 1.38238 * 119.99829 * 179.78647 * 18 17 14 20 20 C 1.38239 * 119.99904 * 0.44948 * 19 18 17 21 21 C 1.38233 * 119.99728 * 359.80521 * 20 19 18 22 22 C 1.38229 * 120.00465 * 359.97438 * 21 20 19 23 23 C 1.52961 * 109.81782 * 296.39616 * 10 9 8 24 24 C 1.51268 * 120.84886 * 359.97438 * 7 2 1 25 25 H 0.97001 * 120.00139 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.62603 * 248.34650 * 8 7 2 27 27 H 1.09000 * 109.62451 * 8.72841 * 8 7 2 28 28 H 1.08995 * 109.48780 * 294.65147 * 9 8 7 29 29 H 1.09003 * 109.48339 * 174.60651 * 9 8 7 30 30 H 1.00901 * 111.00196 * 39.30029 * 12 10 9 31 31 H 1.09005 * 109.47208 * 59.99899 * 13 12 10 32 32 H 1.08999 * 109.46786 * 299.99678 * 13 12 10 33 33 H 0.96700 * 114.00311 * 60.00313 * 16 14 13 34 34 H 1.07998 * 120.00194 * 0.02562 * 18 17 14 35 35 H 1.08003 * 120.00038 * 180.27175 * 19 18 17 36 36 H 1.08001 * 119.99802 * 179.83174 * 20 19 18 37 37 H 1.08004 * 119.99346 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.00005 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.48440 * 183.57990 * 23 10 9 40 40 H 1.08999 * 109.48113 * 303.61028 * 23 10 9 41 41 H 1.09001 * 109.62318 * 111.65316 * 24 7 2 42 42 H 1.09003 * 109.62407 * 351.08895 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9903 -2.1313 1.1346 10 6 3.3395 -3.5073 0.9827 11 1 3.5740 -3.9111 -0.0022 12 7 3.8604 -4.4106 2.0175 13 6 5.1265 -5.0229 1.5930 14 6 5.6371 -5.9543 2.6942 15 1 5.7140 -5.4019 3.6307 16 8 4.7263 -7.0434 2.8570 17 6 6.9940 -6.4871 2.3124 18 6 7.0977 -7.5430 1.4263 19 6 8.3426 -8.0288 1.0727 20 6 9.4835 -7.4647 1.6123 21 6 9.3795 -6.4122 2.5023 22 6 8.1349 -5.9234 2.8525 23 6 1.8224 -3.3829 1.1334 24 6 1.2677 -2.5152 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.8779 -1.6001 -0.9543 27 1 3.8981 -0.2074 0.1567 28 1 3.7055 -1.6984 2.0935 29 1 5.0744 -2.2350 1.0899 30 1 3.9691 -3.9284 2.8971 31 1 5.8637 -4.2416 1.4077 32 1 4.9651 -5.5945 0.6791 33 1 4.6086 -7.5800 2.0612 34 1 6.2062 -7.9860 1.0074 35 1 8.4238 -8.8510 0.3770 36 1 10.4560 -7.8460 1.3380 37 1 10.2709 -5.9712 2.9236 38 1 8.0537 -5.1014 3.5482 39 1 1.3701 -4.3736 1.0878 40 1 1.5890 -2.9205 2.0924 41 1 1.4199 -3.0192 -0.9550 42 1 0.2036 -2.3409 0.1589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252003958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:00 Heat of formation + Delta-G solvation = -62.123872 kcal Electronic energy + Delta-G solvation = -20990.200475 eV Core-core repulsion = 17933.032813 eV Total energy + Delta-G solvation = -3057.167662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62554 -39.28523 -37.81146 -35.58204 -33.51674 -32.39923 -31.74217 -31.45467 -29.51173 -27.20434 -24.34493 -23.53994 -23.21528 -22.95206 -21.97190 -21.01215 -18.56297 -18.13421 -17.05941 -16.71672 -16.42733 -16.36493 -15.67209 -15.63381 -15.14110 -14.87593 -14.61184 -14.53190 -14.23440 -14.07299 -13.87400 -13.70651 -13.27169 -13.07341 -12.74701 -12.62997 -12.52277 -12.38505 -12.09926 -11.92939 -11.83802 -11.64236 -11.34480 -11.04237 -10.73087 -10.57342 -10.54350 -9.82708 -9.65875 -9.15615 -8.15879 -6.10355 0.39533 0.49507 1.37768 1.39515 1.48149 2.40350 2.80748 3.06706 3.23632 3.60579 3.86906 3.94551 4.05750 4.10854 4.18495 4.22234 4.29705 4.35362 4.53595 4.61090 4.63827 4.70980 4.77182 4.93912 5.03500 5.05733 5.07701 5.09400 5.15974 5.23024 5.24253 5.40627 5.55591 5.57756 5.61747 5.64108 5.66000 5.78894 5.85758 6.09965 6.20715 6.36172 6.54696 6.84154 6.96964 7.47256 8.95208 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.003583 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.561548 B = 7812.436758 C = 8346.735508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.017 3.983 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.497 4.497 8 C -0.020 4.020 9 C -0.126 4.126 10 C 0.113 3.887 11 H 0.060 0.940 12 N -0.680 5.680 13 C 0.039 3.961 14 C 0.161 3.839 15 H 0.102 0.898 16 O -0.558 6.558 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.082 4.082 24 C 0.005 3.995 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.340 0.660 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.382 0.618 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.044 0.956 40 H 0.034 0.966 41 H -0.003 1.003 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.181 -13.996 4.290 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.516 4.516 8 C -0.059 4.059 9 C -0.165 4.165 10 C 0.003 3.997 11 H 0.078 0.922 12 N -0.310 5.310 13 C -0.090 4.090 14 C 0.101 3.899 15 H 0.120 0.880 16 O -0.365 6.365 17 C -0.126 4.126 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.120 4.120 24 C -0.033 4.033 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 18.601 -14.200 4.691 23.868 hybrid contribution 0.400 1.704 -0.642 1.865 sum 19.002 -12.496 4.050 23.100 Atomic orbital electron populations 1.69989 1.07756 1.27382 1.52339 1.25671 0.95390 1.01956 0.95057 0.85788 0.79293 0.79481 0.78599 1.20063 1.21965 1.17333 1.20682 0.91302 0.91817 1.47795 1.19787 0.94640 0.96389 0.95035 1.22110 0.97912 0.97039 0.99485 1.21202 0.94461 0.90007 0.94006 0.92186 1.60604 1.28180 1.36592 1.05596 1.22630 0.90509 0.97452 0.98425 1.20675 0.84216 0.86757 0.98246 0.87975 1.86602 1.65283 1.43547 1.41062 1.20599 0.95777 0.97715 0.98554 1.21163 0.98860 0.96567 0.97496 1.21449 0.92265 1.00524 1.00160 1.21529 0.99573 0.96490 0.97025 1.21450 0.97796 0.97125 0.98161 1.21256 0.92412 1.00342 1.00293 1.21365 0.94723 0.97434 0.98526 1.19352 0.96890 0.93740 0.93274 0.92901 0.96306 0.94836 0.93513 0.92835 0.84207 0.94459 0.90871 0.76892 0.84920 0.84036 0.83957 0.84142 0.85161 0.93717 0.94736 0.98466 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 12.73 21.45 0.27 -55.80 16 2 C 0.02 0.94 5.46 84.66 0.46 1.41 16 3 Si 0.94 43.51 27.53 68.60 1.89 45.40 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.25 -10.70 6.11 99.48 0.61 -10.09 16 7 C -0.50 -26.49 5.52 -16.17 -0.09 -26.58 16 8 C -0.02 -0.92 5.59 30.11 0.17 -0.76 16 9 C -0.13 -4.81 5.20 30.66 0.16 -4.65 16 10 C 0.11 4.16 2.36 44.89 0.11 4.26 16 11 H 0.06 2.27 7.80 -2.39 -0.02 2.25 16 12 N -0.68 -20.60 6.19 -491.69 -3.04 -23.64 16 13 C 0.04 0.97 5.10 86.30 0.44 1.41 16 14 C 0.16 3.49 3.39 29.85 0.10 3.59 16 15 H 0.10 2.21 8.00 -2.39 -0.02 2.19 16 16 O -0.56 -13.22 13.13 -148.98 -1.96 -15.18 16 17 C -0.13 -2.49 4.97 -19.87 -0.10 -2.58 16 18 C -0.12 -2.17 9.32 22.27 0.21 -1.97 16 19 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 20 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 21 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 22 C -0.12 -2.30 9.67 22.27 0.22 -2.08 16 23 C -0.08 -3.57 5.54 30.64 0.17 -3.40 16 24 C 0.01 0.28 5.97 30.09 0.18 0.46 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.03 1.49 4.59 -2.39 -0.01 1.48 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.77 7.35 -2.39 -0.02 1.75 16 30 H 0.34 9.94 8.48 -89.69 -0.76 9.18 16 31 H 0.04 0.93 7.35 -2.38 -0.02 0.92 16 32 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 33 H 0.38 6.80 7.50 -74.06 -0.56 6.24 16 34 H 0.13 1.90 6.78 -2.91 -0.02 1.88 16 35 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.13 2.06 8.04 -2.91 -0.02 2.04 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.02 1.31 7.07 -2.39 -0.02 1.29 16 Total: -1.00 -63.98 332.34 -0.54 -64.52 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.40 Total: 20.77 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 2.69 Total: -36.07 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.77 Total: -79.44 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.96 Total: -15.18 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.89 Total: 45.40 kcal Total: -63.98 -0.54 -64.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252003958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.399 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds