Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47180 * 120.00369 * 3 2 1 6 6 H 1.48502 * 109.47169 * 239.99914 * 3 2 1 7 7 C 1.37876 * 120.00167 * 180.28126 * 2 1 3 8 8 H 1.07998 * 120.00171 * 174.96972 * 7 2 1 9 9 C 1.50704 * 119.99893 * 354.96021 * 7 2 1 10 10 N 1.46892 * 110.01607 * 304.95592 * 9 7 2 11 11 C 1.46894 * 111.00283 * 304.54031 * 10 9 7 12 12 C 1.53008 * 109.47382 * 175.00717 * 11 10 9 13 13 H 1.08992 * 109.46754 * 60.00141 * 12 11 10 14 14 O 1.42896 * 109.46831 * 299.99926 * 12 11 10 15 15 C 1.50701 * 109.47090 * 180.02562 * 12 11 10 16 16 C 1.38237 * 119.99987 * 84.72739 * 15 12 11 17 17 C 1.38232 * 119.99717 * 179.78912 * 16 15 12 18 18 C 1.38236 * 120.00049 * 0.43774 * 17 16 15 19 19 C 1.38235 * 120.00106 * 359.81157 * 18 17 16 20 20 C 1.38234 * 120.00026 * 359.97438 * 19 18 17 21 21 C 1.54268 * 110.02984 * 183.56332 * 9 7 2 22 22 C 1.54970 * 104.15783 * 217.13694 * 21 9 7 23 23 C 1.54893 * 102.77537 * 37.89128 * 22 21 9 24 24 C 1.53877 * 110.02873 * 66.34861 * 9 7 2 25 25 H 0.97001 * 120.00255 * 359.72640 * 1 2 3 26 26 H 1.00906 * 110.99962 * 180.58355 * 10 9 7 27 27 H 1.08998 * 109.47134 * 295.00495 * 11 10 9 28 28 H 1.09001 * 109.47315 * 55.00485 * 11 10 9 29 29 H 0.96701 * 114.00304 * 299.99822 * 14 12 11 30 30 H 1.08001 * 120.00002 * 359.97438 * 16 15 12 31 31 H 1.08004 * 120.00136 * 180.27179 * 17 16 15 32 32 H 1.08004 * 119.99722 * 179.83965 * 18 17 16 33 33 H 1.07998 * 119.99680 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.00017 * 179.97438 * 20 19 18 35 35 H 1.08994 * 110.48644 * 335.78173 * 21 9 7 36 36 H 1.08995 * 110.48468 * 98.43104 * 21 9 7 37 37 H 1.09004 * 110.72101 * 279.57624 * 22 21 9 38 38 H 1.08994 * 110.76160 * 156.22502 * 22 21 9 39 39 H 1.09002 * 110.48561 * 203.40723 * 23 22 21 40 40 H 1.08999 * 110.48775 * 80.76028 * 23 22 21 41 41 H 1.09005 * 110.02869 * 238.56367 * 24 9 7 42 42 H 1.09002 * 110.03239 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0059 8 1 3.0814 -1.1954 -0.0879 9 6 1.2554 -2.4972 0.1024 10 7 0.4080 -2.4918 1.3022 11 6 1.2017 -2.2116 2.5061 12 6 0.2706 -2.0910 3.7143 13 1 -0.2742 -3.0255 3.8477 14 8 -0.6566 -1.0258 3.4965 15 6 1.0849 -1.8029 4.9492 16 6 1.4412 -0.5026 5.2544 17 6 2.1845 -0.2380 6.3895 18 6 2.5791 -1.2745 7.2145 19 6 2.2271 -2.5754 6.9066 20 6 1.4802 -2.8396 5.7739 21 6 2.2499 -3.6749 0.1630 22 6 1.5588 -4.7970 -0.6524 23 6 0.8909 -4.0163 -1.8115 24 6 0.3914 -2.7142 -1.1523 25 1 -0.4850 0.8400 0.0040 26 1 -0.0938 -3.3624 1.3944 27 1 1.9090 -3.0241 2.6722 28 1 1.7467 -1.2771 2.3727 29 1 -0.2407 -0.1621 3.3695 30 1 1.1364 0.3068 4.6076 31 1 2.4591 0.7784 6.6303 32 1 3.1620 -1.0680 8.1000 33 1 2.5358 -3.3852 7.5510 34 1 1.2056 -3.8560 5.5331 35 1 3.1981 -3.3976 -0.2976 36 1 2.4039 -3.9914 1.1946 37 1 0.8090 -5.3072 -0.0477 38 1 2.2938 -5.5044 -1.0362 39 1 0.0538 -4.5824 -2.2202 40 1 1.6193 -3.7940 -2.5913 41 1 -0.6567 -2.8165 -0.8707 42 1 0.5136 -1.8767 -1.8392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252014304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = -27.251486 kcal Electronic energy + Delta-G solvation = -22084.524121 eV Core-core repulsion = 19028.868639 eV Total energy + Delta-G solvation = -3055.655482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.36292 -37.87286 -36.20754 -32.96008 -31.99208 -31.06545 -30.65441 -27.81884 -27.49889 -25.76729 -23.80589 -22.45001 -22.16175 -20.54547 -19.51063 -18.56294 -17.24231 -16.01091 -15.61677 -15.30615 -15.01780 -14.72646 -14.39136 -14.04964 -13.72986 -13.27375 -13.18020 -13.15559 -12.48332 -12.40221 -12.27526 -11.72885 -11.47565 -11.16258 -10.95419 -10.90298 -10.55249 -10.53034 -10.35002 -10.22515 -10.00272 -9.87612 -9.65604 -9.43430 -9.19494 -8.85238 -8.76627 -8.43969 -8.20492 -6.70907 -5.79432 -3.91482 1.51623 1.55503 3.32587 3.39004 3.42587 3.93867 4.49515 4.90502 5.01409 5.10391 5.16081 5.24448 5.40791 5.56838 5.64446 5.68711 5.72130 5.76599 5.86828 5.96648 6.06000 6.16995 6.24011 6.38818 6.44145 6.52400 6.59937 6.64481 6.66078 6.74125 6.82156 6.83763 6.92387 7.00690 7.15107 7.15269 7.39747 7.44545 7.84852 7.93338 8.29277 8.38613 8.72712 8.93219 9.25878 9.72597 11.21896 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.006699 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.297451 B = 4178.857341 C = 5205.905133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.088 3.912 3 Si 0.865 3.135 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.048 0.952 9 C 0.248 3.752 10 N -0.632 5.632 11 C 0.054 3.946 12 C 0.148 3.852 13 H 0.091 0.909 14 O -0.536 6.536 15 C -0.099 4.099 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.153 4.153 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.083 4.083 25 H 0.254 0.746 26 H 0.298 0.702 27 H 0.010 0.990 28 H 0.087 0.913 29 H 0.371 0.629 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 -4.674 9.249 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.159 3.841 10 N -0.259 5.259 11 C -0.076 4.076 12 C 0.088 3.912 13 H 0.108 0.892 14 O -0.341 6.341 15 C -0.100 4.100 16 C -0.126 4.126 17 C -0.137 4.137 18 C -0.149 4.149 19 C -0.140 4.140 20 C -0.134 4.134 21 C -0.192 4.192 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.027 0.973 28 H 0.106 0.894 29 H 0.219 0.781 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.673 -4.359 9.208 10.324 hybrid contribution 1.619 0.526 0.136 1.707 sum 3.292 -3.833 9.344 10.623 Atomic orbital electron populations 1.70108 1.05084 1.25279 1.45863 1.24868 0.94503 0.97728 0.94851 0.87143 0.80082 0.84978 0.78534 1.21410 1.20585 1.20586 1.20820 0.92171 0.90013 1.53820 0.93338 1.19050 0.87160 0.91311 0.86582 1.60599 1.28733 1.35776 1.00828 1.22322 0.93944 1.01612 0.89771 1.20859 0.89519 0.91109 0.89738 0.89150 1.86550 1.34633 1.18715 1.94214 1.20877 0.98109 0.93677 0.97360 1.20969 0.98000 0.96564 0.97110 1.21101 0.98501 0.99006 0.95085 1.21070 1.00923 0.93076 0.99838 1.21069 0.98936 0.96643 0.97381 1.20979 0.98865 0.98735 0.94793 1.23240 1.00725 0.97639 0.97631 1.22469 0.98619 0.97329 0.97726 1.22466 0.98703 0.98231 0.97303 1.22017 0.98540 0.93907 0.97678 0.93581 0.88673 0.97268 0.89438 0.78144 0.86024 0.86320 0.86546 0.86436 0.86261 0.92511 0.93812 0.92937 0.93668 0.93727 0.92939 0.93212 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.18 11.93 55.43 0.66 -21.52 16 2 C 0.09 2.28 4.85 -17.82 -0.09 2.19 16 3 Si 0.86 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -13.62 6.27 -34.44 -0.22 -13.84 16 8 H 0.05 1.29 7.52 -52.49 -0.39 0.89 16 9 C 0.25 5.67 0.42 -131.64 -0.05 5.62 16 10 N -0.63 -13.86 5.01 -100.00 -0.50 -14.36 16 11 C 0.05 1.08 4.75 -3.82 -0.02 1.06 16 12 C 0.15 2.62 3.46 -27.88 -0.10 2.53 16 13 H 0.09 1.54 8.05 -51.93 -0.42 1.12 16 14 O -0.54 -10.58 13.00 -35.23 -0.46 -11.03 16 15 C -0.10 -1.58 5.00 -104.62 -0.52 -2.11 16 16 C -0.11 -1.67 9.33 -39.58 -0.37 -2.04 16 17 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 18 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 20 C -0.12 -1.63 9.68 -39.58 -0.38 -2.01 16 21 C -0.15 -3.11 5.82 -25.03 -0.15 -3.26 16 22 C -0.12 -2.21 6.91 -24.69 -0.17 -2.38 16 23 C -0.13 -2.44 6.83 -25.07 -0.17 -2.61 16 24 C -0.08 -1.88 5.41 -25.61 -0.14 -2.02 16 25 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.30 6.20 8.79 -39.29 -0.35 5.86 16 27 H 0.01 0.19 6.44 -51.93 -0.33 -0.15 16 28 H 0.09 2.01 6.61 -51.93 -0.34 1.67 16 29 H 0.37 6.97 7.39 45.56 0.34 7.30 16 30 H 0.12 1.83 6.62 -52.49 -0.35 1.48 16 31 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 36 H 0.04 0.86 6.16 -51.93 -0.32 0.54 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.17 7.92 -51.93 -0.41 0.76 16 42 H 0.06 1.65 7.39 -51.93 -0.38 1.26 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -27.51 333.35 -9.74 -37.25 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -5.88 Total: 14.19 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.57 Total: -24.81 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.16 Total: -35.88 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.46 Total: -11.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.51 -9.74 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252014304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.002 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds