Wall clock time and date at job start Mon Mar 30 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47180 * 120.00369 * 3 2 1 6 6 H 1.48502 * 109.47169 * 239.99914 * 3 2 1 7 7 C 1.37876 * 120.00167 * 180.28126 * 2 1 3 8 8 H 1.07998 * 120.00171 * 174.96972 * 7 2 1 9 9 C 1.50704 * 119.99893 * 354.96021 * 7 2 1 10 10 N 1.46892 * 110.01607 * 304.95592 * 9 7 2 11 11 C 1.46894 * 111.00283 * 304.54031 * 10 9 7 12 12 C 1.53008 * 109.47382 * 175.00717 * 11 10 9 13 13 H 1.08992 * 109.46754 * 60.00141 * 12 11 10 14 14 O 1.42896 * 109.46831 * 299.99926 * 12 11 10 15 15 C 1.50701 * 109.47090 * 180.02562 * 12 11 10 16 16 C 1.38237 * 119.99987 * 84.72739 * 15 12 11 17 17 C 1.38232 * 119.99717 * 179.78912 * 16 15 12 18 18 C 1.38236 * 120.00049 * 0.43774 * 17 16 15 19 19 C 1.38235 * 120.00106 * 359.81157 * 18 17 16 20 20 C 1.38234 * 120.00026 * 359.97438 * 19 18 17 21 21 C 1.54268 * 110.02984 * 183.56332 * 9 7 2 22 22 C 1.54970 * 104.15783 * 217.13694 * 21 9 7 23 23 C 1.54893 * 102.77537 * 37.89128 * 22 21 9 24 24 C 1.53877 * 110.02873 * 66.34861 * 9 7 2 25 25 H 0.97001 * 120.00255 * 359.72640 * 1 2 3 26 26 H 1.00906 * 110.99962 * 180.58355 * 10 9 7 27 27 H 1.08998 * 109.47134 * 295.00495 * 11 10 9 28 28 H 1.09001 * 109.47315 * 55.00485 * 11 10 9 29 29 H 0.96701 * 114.00304 * 299.99822 * 14 12 11 30 30 H 1.08001 * 120.00002 * 359.97438 * 16 15 12 31 31 H 1.08004 * 120.00136 * 180.27179 * 17 16 15 32 32 H 1.08004 * 119.99722 * 179.83965 * 18 17 16 33 33 H 1.07998 * 119.99680 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.00017 * 179.97438 * 20 19 18 35 35 H 1.08994 * 110.48644 * 335.78173 * 21 9 7 36 36 H 1.08995 * 110.48468 * 98.43104 * 21 9 7 37 37 H 1.09004 * 110.72101 * 279.57624 * 22 21 9 38 38 H 1.08994 * 110.76160 * 156.22502 * 22 21 9 39 39 H 1.09002 * 110.48561 * 203.40723 * 23 22 21 40 40 H 1.08999 * 110.48775 * 80.76028 * 23 22 21 41 41 H 1.09005 * 110.02869 * 238.56367 * 24 9 7 42 42 H 1.09002 * 110.03239 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0059 8 1 3.0814 -1.1954 -0.0879 9 6 1.2554 -2.4972 0.1024 10 7 0.4080 -2.4918 1.3022 11 6 1.2017 -2.2116 2.5061 12 6 0.2706 -2.0910 3.7143 13 1 -0.2742 -3.0255 3.8477 14 8 -0.6566 -1.0258 3.4965 15 6 1.0849 -1.8029 4.9492 16 6 1.4412 -0.5026 5.2544 17 6 2.1845 -0.2380 6.3895 18 6 2.5791 -1.2745 7.2145 19 6 2.2271 -2.5754 6.9066 20 6 1.4802 -2.8396 5.7739 21 6 2.2499 -3.6749 0.1630 22 6 1.5588 -4.7970 -0.6524 23 6 0.8909 -4.0163 -1.8115 24 6 0.3914 -2.7142 -1.1523 25 1 -0.4850 0.8400 0.0040 26 1 -0.0938 -3.3624 1.3944 27 1 1.9090 -3.0241 2.6722 28 1 1.7467 -1.2771 2.3727 29 1 -0.2407 -0.1621 3.3695 30 1 1.1364 0.3068 4.6076 31 1 2.4591 0.7784 6.6303 32 1 3.1620 -1.0680 8.1000 33 1 2.5358 -3.3852 7.5510 34 1 1.2056 -3.8560 5.5331 35 1 3.1981 -3.3976 -0.2976 36 1 2.4039 -3.9914 1.1946 37 1 0.8090 -5.3072 -0.0477 38 1 2.2938 -5.5044 -1.0362 39 1 0.0538 -4.5824 -2.2202 40 1 1.6193 -3.7940 -2.5913 41 1 -0.6567 -2.8165 -0.8707 42 1 0.5136 -1.8767 -1.8392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252014304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:57 Heat of formation + Delta-G solvation = -43.752076 kcal Electronic energy + Delta-G solvation = -22085.239640 eV Core-core repulsion = 19028.868639 eV Total energy + Delta-G solvation = -3056.371001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.56336 -39.49251 -37.61986 -34.67850 -33.83326 -32.32779 -31.70900 -29.44965 -29.16109 -27.43039 -25.54682 -23.72574 -23.37725 -21.84926 -21.07960 -20.37727 -18.50009 -17.86494 -17.01731 -16.61610 -16.52881 -16.42544 -15.87681 -15.52833 -15.11546 -14.72948 -14.66423 -14.26810 -14.05880 -13.94476 -13.62541 -13.52537 -12.92410 -12.81419 -12.51120 -12.43628 -12.37397 -11.99456 -11.81429 -11.71080 -11.64259 -11.52248 -11.39093 -11.18726 -10.79936 -10.67044 -10.20261 -9.81438 -9.58915 -8.43066 -7.80937 -5.97311 0.43964 0.50646 1.40451 1.44770 1.48560 2.51708 2.86102 3.35799 3.61286 3.73958 3.96536 4.09250 4.14126 4.16424 4.20063 4.28661 4.35491 4.42735 4.54733 4.67319 4.70189 4.83152 4.92587 5.01625 5.06259 5.08978 5.13929 5.17951 5.19769 5.27193 5.33909 5.45858 5.57088 5.59942 5.61229 5.69663 5.75236 5.84688 6.02321 6.12468 6.41151 6.82487 6.86285 7.10216 7.45912 7.69126 9.17652 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.006699 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.297451 B = 4178.857341 C = 5205.905133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.056 3.944 3 Si 0.912 3.088 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.240 3.760 10 N -0.644 5.644 11 C 0.068 3.932 12 C 0.156 3.844 13 H 0.099 0.901 14 O -0.553 6.553 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.149 4.149 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.078 4.078 25 H 0.250 0.750 26 H 0.305 0.695 27 H 0.014 0.986 28 H 0.053 0.947 29 H 0.371 0.629 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -6.197 10.819 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.578 4.578 8 H 0.051 0.949 9 C 0.150 3.850 10 N -0.272 5.272 11 C -0.063 4.063 12 C 0.096 3.904 13 H 0.116 0.884 14 O -0.358 6.358 15 C -0.121 4.121 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.189 4.189 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.117 4.117 25 H 0.059 0.941 26 H 0.121 0.879 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.218 0.782 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.578 -5.886 10.780 12.550 hybrid contribution 1.385 1.012 -0.315 1.744 sum 3.963 -4.873 10.466 12.206 Atomic orbital electron populations 1.70211 1.05898 1.25341 1.46888 1.25284 0.95035 0.99800 0.94802 0.86386 0.79041 0.82412 0.78152 1.21314 1.20380 1.20968 1.21044 0.91600 0.91790 1.53416 0.94931 1.19057 0.87742 0.91100 0.87072 1.60469 1.29198 1.36324 1.01193 1.22145 0.94123 0.99816 0.90169 1.20780 0.89064 0.90793 0.89733 0.88364 1.86509 1.35724 1.19180 1.94386 1.20725 0.99411 0.94655 0.97356 1.21062 0.99292 0.96295 0.98227 1.21386 0.97963 1.00600 0.94482 1.21500 1.00081 0.92652 1.00283 1.21467 0.97716 0.97786 0.96902 1.21224 0.98975 0.98895 0.95095 1.23112 0.99587 0.97728 0.98429 1.22416 0.99139 0.96642 0.96771 1.22401 0.99571 0.96480 0.97588 1.21866 0.97784 0.94785 0.97254 0.94082 0.87857 0.96807 0.92816 0.78175 0.87110 0.84459 0.83364 0.83284 0.84822 0.93843 0.93290 0.91510 0.91100 0.91455 0.92793 0.94709 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.79 11.93 21.45 0.26 -46.53 16 2 C 0.06 2.99 4.85 84.66 0.41 3.40 16 3 Si 0.91 42.78 29.54 68.60 2.03 44.81 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.54 -28.54 6.27 25.60 0.16 -28.38 16 8 H 0.03 1.78 7.52 -2.91 -0.02 1.76 16 9 C 0.24 11.09 0.42 3.51 0.00 11.09 16 10 N -0.64 -28.59 5.01 -470.29 -2.36 -30.94 16 11 C 0.07 2.76 4.75 86.31 0.41 3.17 16 12 C 0.16 5.59 3.46 29.85 0.10 5.69 16 13 H 0.10 3.31 8.05 -2.39 -0.02 3.29 16 14 O -0.55 -22.45 13.00 -148.98 -1.94 -24.39 16 15 C -0.12 -3.81 5.00 -19.86 -0.10 -3.91 16 16 C -0.13 -4.03 9.33 22.27 0.21 -3.82 16 17 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 18 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 19 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 20 C -0.12 -3.26 9.68 22.27 0.22 -3.05 16 21 C -0.15 -5.94 5.82 31.70 0.18 -5.76 16 22 C -0.11 -3.71 6.91 31.91 0.22 -3.49 16 23 C -0.12 -4.44 6.83 31.67 0.22 -4.22 16 24 C -0.08 -3.58 5.41 31.32 0.17 -3.41 16 25 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 26 H 0.31 12.64 8.79 -89.69 -0.79 11.85 16 27 H 0.01 0.56 6.44 -2.39 -0.02 0.54 16 28 H 0.05 2.56 6.61 -2.39 -0.02 2.55 16 29 H 0.37 14.71 7.39 -74.06 -0.55 14.16 16 30 H 0.11 3.52 6.62 -2.91 -0.02 3.50 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.04 1.82 7.66 -2.39 -0.02 1.80 16 36 H 0.05 1.88 6.16 -2.39 -0.01 1.86 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.03 1.65 7.92 -2.38 -0.02 1.63 16 42 H 0.03 1.48 7.39 -2.39 -0.02 1.46 16 Total: -1.00 -60.13 333.35 0.54 -59.59 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.32 Total: 38.07 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 2.87 Total: -40.61 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.10 Total: -77.48 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.94 Total: -24.39 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -60.13 0.54 -59.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252014304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.835 kcal (2) G-P(sol) polarization free energy of solvation -60.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds