Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47459 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47260 * 300.00286 * 3 2 1 6 6 H 1.48507 * 109.47120 * 59.99875 * 3 2 1 7 7 C 1.37880 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00168 * 174.20411 * 7 2 1 9 9 C 1.50706 * 119.99694 * 354.20472 * 7 2 1 10 10 N 1.46894 * 110.01781 * 57.16199 * 9 7 2 11 11 C 1.46904 * 111.00165 * 62.83311 * 10 9 7 12 12 C 1.52996 * 109.47621 * 185.32349 * 11 10 9 13 13 H 1.09000 * 109.46737 * 304.99928 * 12 11 10 14 14 O 1.42898 * 109.47124 * 64.99325 * 12 11 10 15 15 C 1.50697 * 109.47186 * 185.00166 * 12 11 10 16 16 C 1.38235 * 119.99695 * 279.72225 * 15 12 11 17 17 C 1.38231 * 120.00123 * 179.81554 * 16 15 12 18 18 C 1.38234 * 119.99891 * 0.39298 * 17 16 15 19 19 C 1.38243 * 120.00073 * 359.85906 * 18 17 16 20 20 C 1.38230 * 120.00350 * 99.99742 * 15 12 11 21 21 C 1.54269 * 110.02723 * 178.55411 * 9 7 2 22 22 C 1.54964 * 104.15818 * 95.75821 * 21 9 7 23 23 C 1.54890 * 102.78206 * 37.88194 * 22 21 9 24 24 C 1.53872 * 110.03004 * 295.77005 * 9 7 2 25 25 H 0.96993 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.00904 * 111.00244 * 186.78277 * 10 9 7 27 27 H 1.09007 * 109.47021 * 305.32364 * 11 10 9 28 28 H 1.09002 * 109.47204 * 65.31879 * 11 10 9 29 29 H 0.96706 * 113.99957 * 60.00409 * 14 12 11 30 30 H 1.08001 * 120.00230 * 359.97438 * 16 15 12 31 31 H 1.08000 * 120.00409 * 180.23491 * 17 16 15 32 32 H 1.07995 * 120.00247 * 179.83748 * 18 17 16 33 33 H 1.07990 * 120.00261 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.99796 * 359.97438 * 20 15 12 35 35 H 1.09001 * 110.48194 * 214.39975 * 21 9 7 36 36 H 1.08995 * 110.48975 * 337.04500 * 21 9 7 37 37 H 1.09007 * 110.71660 * 279.57046 * 22 21 9 38 38 H 1.09001 * 110.76868 * 156.22354 * 22 21 9 39 39 H 1.08998 * 110.48568 * 203.40665 * 23 22 21 40 40 H 1.09003 * 110.48434 * 80.76291 * 23 22 21 41 41 H 1.08996 * 110.03501 * 359.95211 * 24 9 7 42 42 H 1.09001 * 110.02987 * 121.38487 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1964 -0.0950 9 6 1.2568 -2.4959 0.1307 10 7 0.2594 -2.6132 -0.9413 11 6 0.9054 -2.6447 -2.2604 12 6 -0.1653 -2.6332 -3.3532 13 1 -0.8600 -3.4570 -3.1897 14 8 -0.8767 -1.3946 -3.3100 15 6 0.4907 -2.7892 -4.7008 16 6 1.0737 -1.6973 -5.3163 17 6 1.6788 -1.8412 -6.5507 18 6 1.6938 -3.0752 -7.1735 19 6 1.1062 -4.1660 -6.5605 20 6 0.5045 -4.0229 -5.3242 21 6 2.2431 -3.6804 0.0668 22 6 2.5340 -4.0120 1.5524 23 6 1.1561 -3.7993 2.2271 24 6 0.5663 -2.5710 1.5037 25 1 -0.4850 0.8400 0.0004 26 1 -0.3242 -3.4250 -0.8051 27 1 1.5474 -1.7707 -2.3715 28 1 1.5058 -3.5501 -2.3494 29 1 -0.3197 -0.6162 -3.4481 30 1 1.0587 -0.7324 -4.8315 31 1 2.1377 -0.9889 -7.0299 32 1 2.1643 -3.1870 -8.1392 33 1 1.1176 -5.1300 -7.0471 34 1 0.0455 -4.8751 -4.8452 35 1 1.7827 -4.5337 -0.4312 36 1 3.1591 -3.3870 -0.4458 37 1 3.2750 -3.3259 1.9627 38 1 2.8616 -5.0459 1.6606 39 1 1.2797 -3.5930 3.2902 40 1 0.5197 -4.6717 2.0783 41 1 0.7726 -1.6663 2.0754 42 1 -0.5090 -2.6945 1.3745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252014306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = -27.138841 kcal Electronic energy + Delta-G solvation = -21983.251246 eV Core-core repulsion = 18927.600648 eV Total energy + Delta-G solvation = -3055.650597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.36594 -37.83527 -36.21799 -32.95960 -31.98542 -31.09060 -30.67951 -27.76981 -27.58514 -25.63589 -23.81627 -22.50001 -22.08977 -20.53395 -19.52117 -18.69415 -17.24829 -16.06337 -15.62690 -15.28921 -14.93999 -14.60312 -14.29790 -14.09459 -13.81092 -13.30186 -13.20040 -13.10123 -12.49480 -12.37979 -12.24877 -11.65595 -11.49202 -11.15241 -10.95990 -10.91910 -10.60503 -10.45055 -10.38604 -10.20110 -10.15284 -9.91914 -9.64742 -9.41982 -9.16568 -8.78154 -8.71811 -8.46692 -8.28333 -6.66958 -5.73296 -3.88829 1.50164 1.53936 3.32634 3.42831 3.46094 3.92549 4.52196 4.89465 5.00447 5.09156 5.18001 5.23201 5.42076 5.57381 5.63558 5.71210 5.74457 5.77421 5.86350 5.99851 6.05189 6.16459 6.23077 6.36979 6.43528 6.52502 6.58875 6.62927 6.65103 6.77135 6.78356 6.88056 6.92588 6.97105 7.07679 7.13897 7.31797 7.38406 7.79806 7.96629 8.31261 8.40405 8.73030 8.95499 9.27676 9.75862 11.25352 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.006261 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.795861 B = 4470.715820 C = 5397.596720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.086 3.914 3 Si 0.866 3.134 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.525 4.525 8 H 0.049 0.951 9 C 0.248 3.752 10 N -0.630 5.630 11 C 0.056 3.944 12 C 0.149 3.851 13 H 0.091 0.909 14 O -0.535 6.535 15 C -0.100 4.100 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.148 4.148 22 C -0.114 4.114 23 C -0.129 4.129 24 C -0.087 4.087 25 H 0.251 0.749 26 H 0.296 0.704 27 H 0.083 0.917 28 H 0.007 0.993 29 H 0.370 0.630 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 -6.816 -8.548 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.564 4.564 8 H 0.067 0.933 9 C 0.159 3.841 10 N -0.257 5.257 11 C -0.074 4.074 12 C 0.089 3.911 13 H 0.109 0.891 14 O -0.339 6.339 15 C -0.101 4.101 16 C -0.127 4.127 17 C -0.137 4.137 18 C -0.149 4.149 19 C -0.141 4.141 20 C -0.133 4.133 21 C -0.188 4.188 22 C -0.152 4.152 23 C -0.167 4.167 24 C -0.126 4.126 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.025 0.975 29 H 0.217 0.783 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.813 -6.394 -8.454 10.631 hybrid contribution 1.517 0.369 -0.182 1.572 sum 2.330 -6.026 -8.636 10.785 Atomic orbital electron populations 1.70198 1.04989 1.24796 1.45795 1.24902 0.94520 0.97762 0.94971 0.86990 0.80486 0.85623 0.77481 1.20214 1.21327 1.21256 1.20837 0.92040 0.89734 1.53782 0.93294 1.19119 0.86183 0.91404 0.87382 1.60660 1.22830 1.42471 0.99764 1.22262 0.94615 1.00157 0.90357 1.20849 0.93505 0.88107 0.88623 0.89088 1.86584 1.37586 1.14669 1.95097 1.20900 0.97793 0.93704 0.97701 1.20981 0.97560 0.98814 0.95328 1.21102 0.99654 0.97420 0.95541 1.21074 1.00651 0.93231 0.99948 1.21077 0.98786 0.98535 0.95657 1.20998 1.00055 0.96977 0.95296 1.23215 1.01224 0.99305 0.95072 1.22330 0.97366 0.98568 0.96958 1.22452 0.96503 0.99158 0.98601 1.22057 0.98349 0.95276 0.96928 0.93868 0.88814 0.89883 0.97468 0.78320 0.85974 0.86304 0.86548 0.86438 0.86255 0.94579 0.92999 0.91933 0.94076 0.93411 0.93569 0.91782 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.27 12.04 55.43 0.67 -21.60 16 2 C 0.09 2.25 5.02 -17.82 -0.09 2.16 16 3 Si 0.87 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -13.52 6.54 -34.44 -0.23 -13.74 16 8 H 0.05 1.31 7.54 -52.49 -0.40 0.91 16 9 C 0.25 5.68 0.43 -131.64 -0.06 5.62 16 10 N -0.63 -13.92 4.93 -99.99 -0.49 -14.41 16 11 C 0.06 1.13 4.71 -3.82 -0.02 1.11 16 12 C 0.15 2.64 3.43 -27.89 -0.10 2.55 16 13 H 0.09 1.57 8.00 -51.93 -0.42 1.15 16 14 O -0.53 -10.60 13.13 -35.23 -0.46 -11.06 16 15 C -0.10 -1.57 4.97 -104.63 -0.52 -2.09 16 16 C -0.11 -1.62 9.32 -39.58 -0.37 -1.99 16 17 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 18 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 19 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 20 C -0.12 -1.60 9.67 -39.59 -0.38 -1.98 16 21 C -0.15 -3.03 4.83 -25.03 -0.12 -3.15 16 22 C -0.11 -2.12 6.91 -24.70 -0.17 -2.30 16 23 C -0.13 -2.42 6.83 -25.07 -0.17 -2.59 16 24 C -0.09 -1.97 5.51 -25.61 -0.14 -2.11 16 25 H 0.25 6.67 8.31 -40.82 -0.34 6.34 16 26 H 0.30 6.22 8.68 -39.29 -0.34 5.88 16 27 H 0.08 1.88 7.04 -51.92 -0.37 1.51 16 28 H 0.01 0.15 7.01 -51.93 -0.36 -0.22 16 29 H 0.37 6.84 7.50 45.56 0.34 7.18 16 30 H 0.12 1.77 6.78 -52.49 -0.36 1.42 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 35 H 0.04 0.69 7.61 -51.93 -0.40 0.30 16 36 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.60 7.43 -51.93 -0.39 1.21 16 42 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -27.93 335.45 -9.81 -37.74 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.00 Total: 13.18 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -3.55 Total: -24.36 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.17 Total: -36.01 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.46 Total: -11.06 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.93 -9.81 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252014306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.601 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds