Wall clock time and date at job start Mon Mar 30 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47459 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47260 * 300.00286 * 3 2 1 6 6 H 1.48507 * 109.47120 * 59.99875 * 3 2 1 7 7 C 1.37880 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00168 * 174.20411 * 7 2 1 9 9 C 1.50706 * 119.99694 * 354.20472 * 7 2 1 10 10 N 1.46894 * 110.01781 * 57.16199 * 9 7 2 11 11 C 1.46904 * 111.00165 * 62.83311 * 10 9 7 12 12 C 1.52996 * 109.47621 * 185.32349 * 11 10 9 13 13 H 1.09000 * 109.46737 * 304.99928 * 12 11 10 14 14 O 1.42898 * 109.47124 * 64.99325 * 12 11 10 15 15 C 1.50697 * 109.47186 * 185.00166 * 12 11 10 16 16 C 1.38235 * 119.99695 * 279.72225 * 15 12 11 17 17 C 1.38231 * 120.00123 * 179.81554 * 16 15 12 18 18 C 1.38234 * 119.99891 * 0.39298 * 17 16 15 19 19 C 1.38243 * 120.00073 * 359.85906 * 18 17 16 20 20 C 1.38230 * 120.00350 * 99.99742 * 15 12 11 21 21 C 1.54269 * 110.02723 * 178.55411 * 9 7 2 22 22 C 1.54964 * 104.15818 * 95.75821 * 21 9 7 23 23 C 1.54890 * 102.78206 * 37.88194 * 22 21 9 24 24 C 1.53872 * 110.03004 * 295.77005 * 9 7 2 25 25 H 0.96993 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.00904 * 111.00244 * 186.78277 * 10 9 7 27 27 H 1.09007 * 109.47021 * 305.32364 * 11 10 9 28 28 H 1.09002 * 109.47204 * 65.31879 * 11 10 9 29 29 H 0.96706 * 113.99957 * 60.00409 * 14 12 11 30 30 H 1.08001 * 120.00230 * 359.97438 * 16 15 12 31 31 H 1.08000 * 120.00409 * 180.23491 * 17 16 15 32 32 H 1.07995 * 120.00247 * 179.83748 * 18 17 16 33 33 H 1.07990 * 120.00261 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.99796 * 359.97438 * 20 15 12 35 35 H 1.09001 * 110.48194 * 214.39975 * 21 9 7 36 36 H 1.08995 * 110.48975 * 337.04500 * 21 9 7 37 37 H 1.09007 * 110.71660 * 279.57046 * 22 21 9 38 38 H 1.09001 * 110.76868 * 156.22354 * 22 21 9 39 39 H 1.08998 * 110.48568 * 203.40665 * 23 22 21 40 40 H 1.09003 * 110.48434 * 80.76291 * 23 22 21 41 41 H 1.08996 * 110.03501 * 359.95211 * 24 9 7 42 42 H 1.09001 * 110.02987 * 121.38487 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1964 -0.0950 9 6 1.2568 -2.4959 0.1307 10 7 0.2594 -2.6132 -0.9413 11 6 0.9054 -2.6447 -2.2604 12 6 -0.1653 -2.6332 -3.3532 13 1 -0.8600 -3.4570 -3.1897 14 8 -0.8767 -1.3946 -3.3100 15 6 0.4907 -2.7892 -4.7008 16 6 1.0737 -1.6973 -5.3163 17 6 1.6788 -1.8412 -6.5507 18 6 1.6938 -3.0752 -7.1735 19 6 1.1062 -4.1660 -6.5605 20 6 0.5045 -4.0229 -5.3242 21 6 2.2431 -3.6804 0.0668 22 6 2.5340 -4.0120 1.5524 23 6 1.1561 -3.7993 2.2271 24 6 0.5663 -2.5710 1.5037 25 1 -0.4850 0.8400 0.0004 26 1 -0.3242 -3.4250 -0.8051 27 1 1.5474 -1.7707 -2.3715 28 1 1.5058 -3.5501 -2.3494 29 1 -0.3197 -0.6162 -3.4481 30 1 1.0587 -0.7324 -4.8315 31 1 2.1377 -0.9889 -7.0299 32 1 2.1643 -3.1870 -8.1392 33 1 1.1176 -5.1300 -7.0471 34 1 0.0455 -4.8751 -4.8452 35 1 1.7827 -4.5337 -0.4312 36 1 3.1591 -3.3870 -0.4458 37 1 3.2750 -3.3259 1.9627 38 1 2.8616 -5.0459 1.6606 39 1 1.2797 -3.5930 3.2902 40 1 0.5197 -4.6717 2.0783 41 1 0.7726 -1.6663 2.0754 42 1 -0.5090 -2.6945 1.3745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252014306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:00 Heat of formation + Delta-G solvation = -43.923438 kcal Electronic energy + Delta-G solvation = -21983.979080 eV Core-core repulsion = 18927.600648 eV Total energy + Delta-G solvation = -3056.378432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54655 -39.46523 -37.62963 -34.65963 -33.87197 -32.33516 -31.71288 -29.38786 -29.24695 -27.33017 -25.54180 -23.73522 -23.31826 -21.83731 -21.08153 -20.53322 -18.50786 -17.88972 -17.01666 -16.57399 -16.47812 -16.18749 -15.99193 -15.55824 -15.17436 -14.72247 -14.60651 -14.22992 -14.07186 -13.97530 -13.65535 -13.30287 -13.02004 -12.82514 -12.55985 -12.44998 -12.29177 -12.01106 -11.86475 -11.77948 -11.69840 -11.57839 -11.27909 -11.23179 -10.70436 -10.61510 -10.30260 -9.80717 -9.59343 -8.40613 -7.75242 -5.95671 0.44411 0.51372 1.39512 1.45930 1.52105 2.53040 2.86913 3.35877 3.63681 3.75892 3.96553 4.08834 4.15584 4.15686 4.22388 4.29104 4.35597 4.44225 4.54927 4.68525 4.70804 4.78566 4.93316 5.00408 5.04466 5.09509 5.13581 5.14994 5.20526 5.24180 5.34027 5.40569 5.55789 5.58291 5.61958 5.66076 5.75489 5.87205 5.99112 6.13098 6.42885 6.84836 6.87394 7.11995 7.46174 7.71062 9.19997 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.006261 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.795861 B = 4470.715820 C = 5397.596720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.052 3.948 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.239 3.761 10 N -0.644 5.644 11 C 0.071 3.929 12 C 0.158 3.842 13 H 0.096 0.904 14 O -0.553 6.553 15 C -0.121 4.121 16 C -0.129 4.129 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.084 4.084 25 H 0.247 0.753 26 H 0.303 0.697 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.371 0.629 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -8.623 -9.759 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.154 4.154 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.571 4.571 8 H 0.050 0.950 9 C 0.150 3.850 10 N -0.272 5.272 11 C -0.059 4.059 12 C 0.098 3.902 13 H 0.114 0.886 14 O -0.359 6.359 15 C -0.122 4.122 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.182 4.182 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.218 0.782 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.534 -8.204 -9.667 12.772 hybrid contribution 1.330 0.917 0.138 1.621 sum 2.864 -7.287 -9.530 12.334 Atomic orbital electron populations 1.70303 1.05814 1.24861 1.46960 1.25340 0.95083 0.99912 0.95029 0.86220 0.79299 0.82947 0.77220 1.20440 1.21077 1.21451 1.21030 0.91426 0.91466 1.53136 0.94956 1.19133 0.86817 0.91222 0.87826 1.60514 1.23209 1.43071 1.00452 1.22089 0.94864 0.98705 0.90266 1.20753 0.92802 0.87282 0.89371 0.88650 1.86538 1.38491 1.15547 1.95293 1.20715 0.99392 0.95061 0.97031 1.21072 0.98666 0.98432 0.96542 1.21392 0.99219 0.98921 0.94804 1.21505 0.99575 0.92488 1.00919 1.21464 0.97530 1.00065 0.94875 1.21230 1.00318 0.96522 0.96142 1.23084 0.99857 0.98643 0.96656 1.22309 0.97024 1.00243 0.95110 1.22384 0.96547 0.97899 0.98925 1.21918 0.97676 0.95770 0.96872 0.94376 0.88077 0.93097 0.96954 0.78183 0.86925 0.84327 0.83366 0.83359 0.84964 0.93198 0.94431 0.92919 0.90845 0.91986 0.91433 0.95194 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.97 12.04 21.45 0.26 -46.71 16 2 C 0.05 2.77 5.02 84.66 0.42 3.19 16 3 Si 0.92 43.16 29.54 68.60 2.03 45.18 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.53 -28.10 6.54 25.60 0.17 -27.93 16 8 H 0.03 1.77 7.54 -2.91 -0.02 1.75 16 9 C 0.24 11.07 0.43 3.51 0.00 11.07 16 10 N -0.64 -28.92 4.93 -470.27 -2.32 -31.24 16 11 C 0.07 2.89 4.71 86.30 0.41 3.30 16 12 C 0.16 5.67 3.43 29.85 0.10 5.77 16 13 H 0.10 3.29 8.00 -2.39 -0.02 3.27 16 14 O -0.55 -22.68 13.13 -148.98 -1.96 -24.64 16 15 C -0.12 -3.77 4.97 -19.87 -0.10 -3.87 16 16 C -0.13 -3.86 9.32 22.27 0.21 -3.65 16 17 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 18 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 19 C -0.12 -2.62 10.05 22.27 0.22 -2.39 16 20 C -0.12 -3.24 9.67 22.27 0.22 -3.02 16 21 C -0.14 -5.70 4.83 31.70 0.15 -5.55 16 22 C -0.11 -3.82 6.91 31.91 0.22 -3.60 16 23 C -0.12 -4.26 6.83 31.67 0.22 -4.04 16 24 C -0.08 -3.78 5.51 31.32 0.17 -3.61 16 25 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 26 H 0.30 12.75 8.68 -89.69 -0.78 11.97 16 27 H 0.05 2.40 7.04 -2.38 -0.02 2.38 16 28 H 0.01 0.49 7.01 -2.39 -0.02 0.48 16 29 H 0.37 14.53 7.50 -74.05 -0.56 13.97 16 30 H 0.11 3.44 6.78 -2.91 -0.02 3.42 16 31 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.15 2.25 8.06 -2.92 -0.02 2.23 16 34 H 0.13 3.00 8.04 -2.91 -0.02 2.97 16 35 H 0.05 1.84 7.61 -2.39 -0.02 1.82 16 36 H 0.04 1.58 7.66 -2.39 -0.02 1.56 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.03 1.51 7.43 -2.39 -0.02 1.50 16 42 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 Total: -1.00 -60.80 335.45 0.55 -60.26 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.32 Total: 36.78 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 2.86 Total: -39.62 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.06 Total: -77.96 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.96 Total: -24.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -60.80 0.55 -60.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252014306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.332 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds