Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47107 * 239.99793 * 3 2 1 5 5 H 1.48495 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47025 * 120.00118 * 3 2 1 7 7 C 1.37881 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47135 * 174.25820 * 9 7 2 11 11 C 1.46905 * 110.99662 * 149.78063 * 10 9 7 12 12 C 1.50705 * 109.46562 * 190.00297 * 11 10 9 13 13 C 1.38230 * 119.99681 * 269.72303 * 12 11 10 14 14 C 1.38238 * 119.99609 * 179.76905 * 13 12 11 15 15 C 1.38231 * 120.00238 * 0.50887 * 14 13 12 16 16 C 1.38245 * 119.99772 * 359.75024 * 15 14 13 17 17 C 1.38229 * 120.00071 * 90.00486 * 12 11 10 18 18 C 1.46894 * 111.00109 * 273.73578 * 10 9 7 19 19 H 1.09001 * 109.52116 * 191.90141 * 18 10 9 20 20 C 1.53177 * 109.57626 * 71.74711 * 18 10 9 21 21 C 1.53177 * 109.03998 * 183.08083 * 20 18 10 22 22 C 1.53090 * 109.15970 * 56.97868 * 21 20 18 23 23 O 1.42901 * 109.41768 * 302.39032 * 22 21 20 24 24 C 1.42902 * 114.09345 * 61.16077 * 23 22 21 25 25 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47139 * 54.26210 * 9 7 2 27 27 H 1.08998 * 109.47222 * 294.26565 * 9 7 2 28 28 H 1.09000 * 109.47232 * 309.99952 * 11 10 9 29 29 H 1.08996 * 109.46860 * 70.00299 * 11 10 9 30 30 H 1.07998 * 120.00098 * 0.02562 * 13 12 11 31 31 H 1.08002 * 119.99956 * 180.23469 * 14 13 12 32 32 H 1.07997 * 120.00583 * 179.72368 * 15 14 13 33 33 H 1.07996 * 119.99652 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.00186 * 359.97438 * 17 12 11 35 35 H 1.09007 * 109.54365 * 302.94876 * 20 18 10 36 36 H 1.09004 * 109.54648 * 63.21029 * 20 18 10 37 37 H 1.08999 * 109.52031 * 176.88638 * 21 20 18 38 38 H 1.09003 * 109.52159 * 297.07415 * 21 20 18 39 39 H 1.09003 * 109.48042 * 62.38096 * 22 21 20 40 40 H 1.08998 * 109.47800 * 182.40542 * 22 21 20 41 41 H 1.09003 * 109.47836 * 178.85437 * 24 23 22 42 42 H 1.09003 * 109.48476 * 58.82667 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1996 -3.6122 -0.1397 11 6 1.7005 -4.8169 0.5369 12 6 2.7929 -5.8539 0.5869 13 6 2.9224 -6.7712 -0.4390 14 6 3.9274 -7.7194 -0.3954 15 6 4.7963 -7.7568 0.6790 16 6 4.6634 -6.8427 1.7075 17 6 3.6617 -5.8913 1.6614 18 6 2.4882 -3.8842 -1.5541 19 1 3.0176 -4.8330 -1.6419 20 6 3.3558 -2.7591 -2.1265 21 6 3.5850 -3.0149 -3.6192 22 6 2.2304 -3.1202 -4.3247 23 8 1.4619 -4.1645 -3.7240 24 6 1.1761 -3.9560 -2.3395 25 1 -0.4850 0.8401 0.0004 26 1 0.5492 -2.5135 -0.8344 27 1 0.7040 -2.6029 0.9365 28 1 1.3938 -4.5630 1.5516 29 1 0.8468 -5.2145 -0.0119 30 1 2.2410 -6.7446 -1.2765 31 1 4.0310 -8.4338 -1.1988 32 1 5.5787 -8.5004 0.7152 33 1 5.3420 -6.8722 2.5472 34 1 3.5579 -5.1771 2.4650 35 1 2.8480 -1.8037 -1.9940 36 1 4.3148 -2.7386 -1.6086 37 1 4.1553 -2.1902 -4.0467 38 1 4.1366 -3.9461 -3.7487 39 1 1.6964 -2.1748 -4.2294 40 1 2.3867 -3.3447 -5.3798 41 1 0.5726 -4.7826 -1.9644 42 1 0.6282 -3.0215 -2.2180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254374612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -14.009199 kcal Electronic energy + Delta-G solvation = -22210.788372 eV Core-core repulsion = 19155.707119 eV Total energy + Delta-G solvation = -3055.081253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66579 -38.61460 -36.18924 -32.81526 -32.56706 -31.22928 -30.68162 -29.05246 -27.17722 -24.64741 -24.50279 -23.08692 -22.26248 -21.38810 -20.43321 -18.80305 -16.70973 -16.23882 -15.99596 -15.52772 -15.13655 -14.85657 -14.76618 -14.41614 -14.17568 -13.75729 -13.22198 -13.14517 -12.63185 -12.53954 -12.22754 -12.20117 -12.04843 -11.65627 -11.22084 -11.02685 -10.94292 -10.76774 -10.66299 -10.52707 -10.40815 -10.18583 -9.88361 -9.54039 -9.20125 -9.07725 -8.64840 -8.50549 -8.38361 -7.16622 -6.04425 -4.03791 1.59481 1.64382 3.30788 3.35765 3.38517 3.99179 4.28678 4.41295 4.98730 5.08929 5.11887 5.21605 5.28047 5.34872 5.39709 5.42674 5.51790 5.57127 5.71902 5.74850 5.78212 5.93976 5.98393 6.02418 6.11752 6.27007 6.29356 6.31925 6.36005 6.40157 6.57548 6.68755 6.71166 6.83639 6.94381 7.07843 7.24436 7.27473 7.36014 7.59844 7.81754 8.09968 8.15407 8.49416 9.02748 9.57985 11.04910 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.006391 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.698008 B = 4380.266497 C = 5306.162109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.177 3.823 10 N -0.519 5.519 11 C 0.087 3.913 12 C -0.062 4.062 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.099 4.099 18 C 0.064 3.936 19 H 0.074 0.926 20 C -0.118 4.118 21 C -0.153 4.153 22 C 0.062 3.938 23 O -0.391 6.391 24 C 0.021 3.979 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.021 0.979 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 -11.543 -2.595 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.052 3.948 10 N -0.243 5.243 11 C -0.041 4.041 12 C -0.062 4.062 13 C -0.134 4.134 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.118 4.118 18 C -0.046 4.046 19 H 0.092 0.908 20 C -0.155 4.155 21 C -0.192 4.192 22 C -0.015 4.015 23 O -0.309 6.309 24 C -0.056 4.056 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.299 -11.420 -2.462 13.272 hybrid contribution -0.183 0.950 -0.196 0.987 sum 6.116 -10.471 -2.658 12.414 Atomic orbital electron populations 1.69935 1.05985 1.26855 1.51134 1.24982 0.94821 0.99135 0.95755 0.86634 0.79494 0.83044 0.78705 1.20259 1.21456 1.20236 1.21143 0.93679 0.89469 1.49191 0.91586 1.20062 0.90271 0.87641 0.96798 1.62349 1.47156 1.04285 1.10542 1.21129 0.92738 0.90068 1.00180 1.19968 0.97035 0.95210 0.93995 1.21099 0.98700 0.95374 0.98242 1.21046 0.95903 0.98980 0.98299 1.21039 0.99567 0.99523 0.94797 1.21103 0.98481 0.95912 0.98742 1.21064 0.94588 0.97724 0.98388 1.22148 0.95255 0.98938 0.88232 0.90753 1.21807 1.00414 1.01154 0.92140 1.22214 0.97595 1.01519 0.97835 1.22514 0.91472 0.91232 0.96290 1.87798 1.73118 1.45903 1.24036 1.23516 0.98648 1.02313 0.81169 0.92904 0.96476 0.96046 0.90199 0.94960 0.86421 0.86618 0.86748 0.86531 0.85938 0.88002 0.92003 0.91460 0.92223 0.93070 0.89906 0.90447 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -13.10 6.90 -34.44 -0.24 -13.34 16 8 H 0.07 1.76 7.20 -52.49 -0.38 1.38 16 9 C 0.18 4.28 4.56 -4.98 -0.02 4.26 16 10 N -0.52 -10.61 4.34 -229.35 -1.00 -11.60 16 11 C 0.09 1.53 4.97 -4.97 -0.02 1.50 16 12 C -0.06 -0.98 4.93 -104.63 -0.52 -1.49 16 13 C -0.12 -1.69 7.86 -39.58 -0.31 -2.00 16 14 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 15 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 16 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 17 C -0.10 -1.48 9.70 -39.59 -0.38 -1.86 16 18 C 0.06 1.20 2.21 -67.58 -0.15 1.05 16 19 H 0.07 1.36 5.16 -51.93 -0.27 1.10 16 20 C -0.12 -2.25 4.70 -26.55 -0.12 -2.37 16 21 C -0.15 -2.43 6.14 -26.59 -0.16 -2.60 16 22 C 0.06 0.99 6.84 37.20 0.25 1.25 16 23 O -0.39 -7.12 10.77 -35.23 -0.38 -7.50 16 24 C 0.02 0.40 5.46 37.20 0.20 0.61 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.02 0.45 4.81 -51.93 -0.25 0.20 16 27 H 0.02 0.56 7.56 -51.93 -0.39 0.17 16 28 H 0.08 1.41 7.73 -51.93 -0.40 1.01 16 29 H 0.03 0.55 6.72 -51.93 -0.35 0.20 16 30 H 0.12 1.68 7.75 -52.49 -0.41 1.28 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.10 2.26 5.61 -51.93 -0.29 1.97 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.38 6.93 -51.93 -0.36 1.02 16 42 H 0.08 1.66 5.65 -51.93 -0.29 1.37 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -28.29 325.48 -9.85 -38.14 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.33 Total: 4.58 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.77 Total: -19.66 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.26 Total: -36.52 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.38 Total: -7.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.29 -9.85 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254374612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.133 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds