Wall clock time and date at job start Mon Mar 30 2020 01:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47107 * 239.99793 * 3 2 1 5 5 H 1.48495 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47025 * 120.00118 * 3 2 1 7 7 C 1.37881 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47135 * 174.25820 * 9 7 2 11 11 C 1.46905 * 110.99662 * 149.78063 * 10 9 7 12 12 C 1.50705 * 109.46562 * 190.00297 * 11 10 9 13 13 C 1.38230 * 119.99681 * 269.72303 * 12 11 10 14 14 C 1.38238 * 119.99609 * 179.76905 * 13 12 11 15 15 C 1.38231 * 120.00238 * 0.50887 * 14 13 12 16 16 C 1.38245 * 119.99772 * 359.75024 * 15 14 13 17 17 C 1.38229 * 120.00071 * 90.00486 * 12 11 10 18 18 C 1.46894 * 111.00109 * 273.73578 * 10 9 7 19 19 H 1.09001 * 109.52116 * 191.90141 * 18 10 9 20 20 C 1.53177 * 109.57626 * 71.74711 * 18 10 9 21 21 C 1.53177 * 109.03998 * 183.08083 * 20 18 10 22 22 C 1.53090 * 109.15970 * 56.97868 * 21 20 18 23 23 O 1.42901 * 109.41768 * 302.39032 * 22 21 20 24 24 C 1.42902 * 114.09345 * 61.16077 * 23 22 21 25 25 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47139 * 54.26210 * 9 7 2 27 27 H 1.08998 * 109.47222 * 294.26565 * 9 7 2 28 28 H 1.09000 * 109.47232 * 309.99952 * 11 10 9 29 29 H 1.08996 * 109.46860 * 70.00299 * 11 10 9 30 30 H 1.07998 * 120.00098 * 0.02562 * 13 12 11 31 31 H 1.08002 * 119.99956 * 180.23469 * 14 13 12 32 32 H 1.07997 * 120.00583 * 179.72368 * 15 14 13 33 33 H 1.07996 * 119.99652 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.00186 * 359.97438 * 17 12 11 35 35 H 1.09007 * 109.54365 * 302.94876 * 20 18 10 36 36 H 1.09004 * 109.54648 * 63.21029 * 20 18 10 37 37 H 1.08999 * 109.52031 * 176.88638 * 21 20 18 38 38 H 1.09003 * 109.52159 * 297.07415 * 21 20 18 39 39 H 1.09003 * 109.48042 * 62.38096 * 22 21 20 40 40 H 1.08998 * 109.47800 * 182.40542 * 22 21 20 41 41 H 1.09003 * 109.47836 * 178.85437 * 24 23 22 42 42 H 1.09003 * 109.48476 * 58.82667 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1996 -3.6122 -0.1397 11 6 1.7005 -4.8169 0.5369 12 6 2.7929 -5.8539 0.5869 13 6 2.9224 -6.7712 -0.4390 14 6 3.9274 -7.7194 -0.3954 15 6 4.7963 -7.7568 0.6790 16 6 4.6634 -6.8427 1.7075 17 6 3.6617 -5.8913 1.6614 18 6 2.4882 -3.8842 -1.5541 19 1 3.0176 -4.8330 -1.6419 20 6 3.3558 -2.7591 -2.1265 21 6 3.5850 -3.0149 -3.6192 22 6 2.2304 -3.1202 -4.3247 23 8 1.4619 -4.1645 -3.7240 24 6 1.1761 -3.9560 -2.3395 25 1 -0.4850 0.8401 0.0004 26 1 0.5492 -2.5135 -0.8344 27 1 0.7040 -2.6029 0.9365 28 1 1.3938 -4.5630 1.5516 29 1 0.8468 -5.2145 -0.0119 30 1 2.2410 -6.7446 -1.2765 31 1 4.0310 -8.4338 -1.1988 32 1 5.5787 -8.5004 0.7152 33 1 5.3420 -6.8722 2.5472 34 1 3.5579 -5.1771 2.4650 35 1 2.8480 -1.8037 -1.9940 36 1 4.3148 -2.7386 -1.6086 37 1 4.1553 -2.1902 -4.0467 38 1 4.1366 -3.9461 -3.7487 39 1 1.6964 -2.1748 -4.2294 40 1 2.3867 -3.3447 -5.3798 41 1 0.5726 -4.7826 -1.9644 42 1 0.6282 -3.0215 -2.2180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254374612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:53 Heat of formation + Delta-G solvation = -30.168524 kcal Electronic energy + Delta-G solvation = -22211.489093 eV Core-core repulsion = 19155.707119 eV Total energy + Delta-G solvation = -3055.781974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08172 -39.81909 -37.70997 -34.75971 -34.03003 -32.54663 -31.75130 -30.60422 -28.94379 -26.12254 -26.02680 -24.78462 -23.35016 -22.83312 -21.71161 -20.37516 -18.50975 -17.62925 -17.41355 -17.06129 -16.65453 -16.30819 -16.02956 -15.97788 -15.58753 -15.21898 -14.61945 -14.31751 -14.21660 -13.91845 -13.77229 -13.50101 -13.44150 -13.14911 -13.00955 -12.77785 -12.53470 -12.39460 -12.06522 -11.99403 -11.76209 -11.71090 -11.51060 -11.27805 -10.93744 -10.60389 -10.51017 -9.71774 -9.59662 -8.84798 -8.13231 -6.19661 0.50947 0.58203 1.41258 1.42680 1.50403 2.41570 2.80417 2.95326 3.17066 3.47743 3.87821 3.94661 3.96258 4.04188 4.09854 4.21259 4.23471 4.34024 4.36803 4.42674 4.49319 4.61280 4.71117 4.74840 4.78905 4.84660 4.93330 5.03703 5.11856 5.17953 5.19281 5.24812 5.26459 5.40095 5.63994 5.66039 5.68256 5.73382 5.82826 6.09409 6.15954 6.20406 6.46456 6.62145 6.92302 7.45940 8.94908 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.006391 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.698008 B = 4380.266497 C = 5306.162109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.498 4.498 8 H 0.061 0.939 9 C 0.191 3.809 10 N -0.525 5.525 11 C 0.089 3.911 12 C -0.081 4.081 13 C -0.126 4.126 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.117 4.117 18 C 0.069 3.931 19 H 0.089 0.911 20 C -0.117 4.117 21 C -0.145 4.145 22 C 0.056 3.944 23 O -0.394 6.394 24 C 0.033 3.967 25 H 0.261 0.739 26 H 0.001 0.999 27 H -0.006 1.006 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 -13.065 -3.613 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.065 3.935 10 N -0.249 5.249 11 C -0.038 4.038 12 C -0.081 4.081 13 C -0.144 4.144 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.142 4.142 17 C -0.135 4.135 18 C -0.040 4.040 19 H 0.107 0.893 20 C -0.155 4.155 21 C -0.183 4.183 22 C -0.021 4.021 23 O -0.312 6.312 24 C -0.045 4.045 25 H 0.070 0.930 26 H 0.019 0.981 27 H 0.013 0.987 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.717 -12.958 -3.484 16.001 hybrid contribution -0.895 1.326 0.125 1.605 sum 7.822 -11.632 -3.359 14.414 Atomic orbital electron populations 1.70059 1.07447 1.27551 1.52484 1.25748 0.95548 1.02479 0.95562 0.85651 0.78312 0.78988 0.79003 1.19275 1.21244 1.19768 1.21358 0.93454 0.90550 1.48306 0.92098 1.19728 0.90288 0.88787 0.94651 1.62265 1.45976 1.04679 1.11995 1.21092 0.93912 0.89626 0.99202 1.19800 0.97229 0.95592 0.95487 1.21163 0.99569 0.95823 0.97872 1.21382 0.94939 0.98579 0.99219 1.21458 0.99691 0.99404 0.93783 1.21406 0.97904 0.95113 0.99806 1.21157 0.95502 0.98708 0.98172 1.22148 0.95255 0.99446 0.87131 0.89339 1.21730 0.99530 0.99390 0.94860 1.22165 0.97851 1.03147 0.95099 1.22750 0.91023 0.90181 0.98114 1.87793 1.73607 1.46594 1.23223 1.23270 0.98358 1.00772 0.82083 0.92987 0.98110 0.98746 0.91239 0.94811 0.86493 0.83967 0.83471 0.84119 0.86626 0.91544 0.92511 0.89518 0.90503 0.94649 0.86251 0.89736 0.94018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.23 5.46 84.66 0.46 0.70 16 3 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.50 -27.25 6.90 25.60 0.18 -27.07 16 8 H 0.06 3.33 7.20 -2.91 -0.02 3.31 16 9 C 0.19 9.77 4.56 85.56 0.39 10.16 16 10 N -0.52 -22.23 4.34 -879.54 -3.82 -26.05 16 11 C 0.09 3.27 4.97 85.56 0.42 3.69 16 12 C -0.08 -2.54 4.93 -19.87 -0.10 -2.64 16 13 C -0.13 -3.49 7.86 22.27 0.17 -3.31 16 14 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 15 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 16 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 17 C -0.12 -3.41 9.70 22.27 0.22 -3.20 16 18 C 0.07 2.64 2.21 45.01 0.10 2.74 16 19 H 0.09 3.16 5.16 -2.39 -0.01 3.15 16 20 C -0.12 -4.47 4.70 30.71 0.14 -4.33 16 21 C -0.14 -4.30 6.14 30.68 0.19 -4.11 16 22 C 0.06 1.70 6.84 72.01 0.49 2.19 16 23 O -0.39 -13.99 10.77 -148.98 -1.60 -15.60 16 24 C 0.03 1.28 5.46 72.01 0.39 1.68 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.00 0.07 4.81 -2.38 -0.01 0.06 16 27 H -0.01 -0.31 7.56 -2.39 -0.02 -0.33 16 28 H 0.07 2.62 7.73 -2.39 -0.02 2.60 16 29 H 0.03 1.20 6.72 -2.39 -0.02 1.19 16 30 H 0.12 3.19 7.75 -2.91 -0.02 3.17 16 31 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.07 3.02 5.61 -2.38 -0.01 3.01 16 36 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.08 3.08 6.93 -2.39 -0.02 3.07 16 42 H 0.04 1.92 5.65 -2.39 -0.01 1.90 16 Total: -1.00 -62.41 325.48 1.62 -60.79 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.00 Total: 20.96 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.74 Total: -31.17 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.53 Total: -80.91 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.60 Total: -15.60 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.41 1.62 -60.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254374612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.625 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds