Wall clock time and date at job start Mon Mar 30 2020 01:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 120.00025 * 2 1 4 4 H 1.48501 * 109.47306 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47487 * 30.00422 * 3 2 1 6 6 H 1.48506 * 109.47090 * 150.00294 * 3 2 1 7 7 C 1.37873 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00397 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47526 * 174.56980 * 9 7 2 11 11 C 1.46895 * 111.00203 * 161.42582 * 10 9 7 12 12 C 1.50699 * 109.47519 * 199.85334 * 11 10 9 13 13 C 1.38238 * 119.99501 * 85.63472 * 12 11 10 14 14 C 1.38238 * 119.99472 * 180.02562 * 13 12 11 15 15 C 1.38237 * 120.00057 * 359.95610 * 14 13 12 16 16 C 1.38237 * 120.00211 * 0.27962 * 15 14 13 17 17 C 1.38231 * 120.00107 * 265.61999 * 12 11 10 18 18 C 1.46896 * 110.99744 * 285.38345 * 10 9 7 19 19 C 1.53176 * 109.54732 * 65.34823 * 18 10 9 20 20 C 1.53090 * 109.16259 * 183.15295 * 19 18 10 21 21 O 1.42899 * 109.41503 * 57.60813 * 20 19 18 22 22 C 1.42897 * 114.09885 * 298.83682 * 21 20 19 23 23 C 1.53098 * 109.41371 * 61.16400 * 22 21 20 24 24 H 0.97004 * 119.99474 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47127 * 54.56533 * 9 7 2 26 26 H 1.09004 * 109.46596 * 294.57028 * 9 7 2 27 27 H 1.09005 * 109.47205 * 79.85077 * 11 10 9 28 28 H 1.09010 * 109.47079 * 319.85724 * 11 10 9 29 29 H 1.07991 * 120.00533 * 359.97438 * 13 12 11 30 30 H 1.07998 * 119.99872 * 179.97438 * 14 13 12 31 31 H 1.08004 * 120.00140 * 180.02562 * 15 14 13 32 32 H 1.07995 * 120.00549 * 179.72556 * 16 15 14 33 33 H 1.08005 * 119.99609 * 359.97438 * 17 12 11 34 34 H 1.09004 * 109.54208 * 185.61615 * 18 10 9 35 35 H 1.09001 * 109.51825 * 303.05652 * 19 18 10 36 36 H 1.08994 * 109.52353 * 63.24596 * 19 18 10 37 37 H 1.09000 * 109.47858 * 297.61965 * 20 19 18 38 38 H 1.09007 * 109.47708 * 177.58916 * 20 19 18 39 39 H 1.08998 * 109.48480 * 301.18086 * 22 21 20 40 40 H 1.09001 * 109.49336 * 181.14560 * 22 21 20 41 41 H 1.09001 * 109.52442 * 182.48654 * 23 22 21 42 42 H 1.09004 * 109.52228 * 62.29476 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2003 -3.6126 -0.1331 11 6 1.5897 -4.8783 0.2947 12 6 2.6729 -5.8760 0.6141 13 6 3.2460 -5.8950 1.8720 14 6 4.2400 -6.8099 2.1648 15 6 4.6604 -7.7064 1.2001 16 6 4.0907 -7.6841 -0.0592 17 6 3.0933 -6.7724 -0.3506 18 6 2.7086 -3.7114 -1.5078 19 6 3.5375 -2.4665 -1.8385 20 6 3.9968 -2.5413 -3.2969 21 8 2.8554 -2.6551 -4.1492 22 6 2.0686 -3.8252 -3.9176 23 6 1.5316 -3.8020 -2.4840 24 1 -0.4849 0.8401 0.0004 25 1 0.5538 -2.5154 -0.8393 26 1 0.6990 -2.6007 0.9327 27 1 0.9616 -5.2679 -0.5066 28 1 0.9809 -4.7062 1.1824 29 1 2.9177 -5.1946 2.6256 30 1 4.6880 -6.8245 3.1474 31 1 5.4367 -8.4214 1.4290 32 1 4.4222 -8.3815 -0.8143 33 1 2.6451 -6.7579 -1.3331 34 1 3.3308 -4.6013 -1.6034 35 1 2.9281 -1.5743 -1.6938 36 1 4.4081 -2.4241 -1.1841 37 1 4.6391 -3.4116 -3.4315 38 1 4.5510 -1.6375 -3.5503 39 1 2.6856 -4.7123 -4.0603 40 1 1.2337 -3.8466 -4.6180 41 1 0.9679 -4.7147 -2.2913 42 1 0.8818 -2.9367 -2.3524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255038727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:23 Heat of formation + Delta-G solvation = -27.535372 kcal Electronic energy + Delta-G solvation = -22194.065821 eV Core-core repulsion = 19138.398029 eV Total energy + Delta-G solvation = -3055.667792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98211 -39.81413 -37.87509 -34.78917 -33.40378 -31.98283 -31.79076 -31.59039 -29.06494 -26.51717 -25.32054 -24.41910 -23.32122 -23.05143 -21.83327 -20.31604 -18.57918 -17.50388 -17.28672 -16.72786 -16.69265 -16.42276 -16.05552 -15.89929 -15.51297 -15.15872 -14.82880 -14.45393 -14.23588 -14.02794 -13.80271 -13.41882 -13.18871 -13.06980 -12.79398 -12.73526 -12.56836 -12.45752 -12.03924 -11.96766 -11.76256 -11.67971 -11.41651 -11.20053 -10.92609 -10.51767 -10.31679 -9.72143 -9.56936 -8.88177 -8.14092 -6.15951 0.53008 0.59418 1.41074 1.41764 1.51829 2.42098 2.90005 3.04654 3.17303 3.46148 3.88592 3.94605 4.04857 4.06785 4.16670 4.24921 4.34126 4.37966 4.41884 4.44577 4.58625 4.59346 4.71732 4.76985 4.81734 4.82963 4.85671 4.99151 5.15787 5.19523 5.20546 5.24737 5.31300 5.51414 5.65034 5.69240 5.74631 5.82280 5.85831 6.13656 6.21433 6.35705 6.42461 6.68937 6.93298 7.46017 8.95785 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.006374 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.091415 B = 4391.941953 C = 5321.283502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.200 3.800 10 N -0.530 5.530 11 C 0.088 3.912 12 C -0.077 4.077 13 C -0.119 4.119 14 C -0.126 4.126 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.105 3.895 19 C -0.167 4.167 20 C 0.066 3.934 21 O -0.406 6.406 22 C 0.071 3.929 23 C -0.187 4.187 24 H 0.260 0.740 25 H -0.011 1.011 26 H -0.008 1.008 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.701 -14.844 -2.989 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.537 4.537 8 H 0.089 0.911 9 C 0.074 3.926 10 N -0.253 5.253 11 C -0.039 4.039 12 C -0.078 4.078 13 C -0.138 4.138 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.140 4.140 17 C -0.143 4.143 18 C -0.003 4.003 19 C -0.204 4.204 20 C -0.011 4.011 21 O -0.325 6.325 22 C -0.006 4.006 23 C -0.226 4.226 24 H 0.069 0.931 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.899 -14.484 -2.786 17.227 hybrid contribution -0.951 0.990 0.081 1.375 sum 7.948 -13.495 -2.706 15.893 Atomic orbital electron populations 1.70081 1.07533 1.27385 1.52604 1.25760 0.95556 1.02564 0.95695 0.85609 0.78822 0.79389 0.78273 1.20100 1.21228 1.18877 1.21518 0.93924 0.90540 1.47671 0.91052 1.19572 0.90266 0.88856 0.93936 1.62237 1.38016 1.02586 1.22421 1.21049 0.93878 0.89471 0.99549 1.19831 0.97703 0.95712 0.94561 1.21131 0.97408 0.98703 0.96550 1.21383 0.96884 0.95520 1.00593 1.21451 1.00441 0.99337 0.93330 1.21401 0.96209 0.98781 0.97643 1.21183 0.98378 0.95999 0.98752 1.21477 0.94716 0.97891 0.86240 1.22783 1.00565 1.01112 0.95962 1.22687 0.87178 1.02273 0.88976 1.87857 1.40406 1.45146 1.59093 1.22550 0.95114 0.87911 0.94987 1.22824 1.00298 1.01775 0.97745 0.93098 0.99309 0.99005 0.93986 0.92090 0.87224 0.84448 0.83589 0.83713 0.85831 0.90165 0.89124 0.91909 0.91855 0.88561 0.91222 0.88350 0.90769 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.50 -27.41 6.42 25.60 0.16 -27.24 16 8 H 0.07 3.86 6.02 -2.91 -0.02 3.84 16 9 C 0.20 10.35 4.51 85.56 0.39 10.74 16 10 N -0.53 -22.32 4.41 -879.35 -3.87 -26.19 16 11 C 0.09 3.18 5.03 85.56 0.43 3.61 16 12 C -0.08 -2.39 5.06 -19.87 -0.10 -2.50 16 13 C -0.12 -3.54 9.72 22.27 0.22 -3.33 16 14 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 15 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 16 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 17 C -0.12 -3.21 8.37 22.27 0.19 -3.02 16 18 C 0.11 3.90 2.19 45.04 0.10 4.00 16 19 C -0.17 -6.49 4.17 30.68 0.13 -6.36 16 20 C 0.07 2.10 6.84 72.01 0.49 2.60 16 21 O -0.41 -14.31 10.76 -148.98 -1.60 -15.91 16 22 C 0.07 2.13 6.84 72.01 0.49 2.63 16 23 C -0.19 -6.68 4.79 30.69 0.15 -6.53 16 24 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 25 H -0.01 -0.60 5.40 -2.39 -0.01 -0.61 16 26 H -0.01 -0.46 7.62 -2.38 -0.02 -0.48 16 27 H 0.04 1.44 6.13 -2.38 -0.01 1.42 16 28 H 0.06 2.33 7.58 -2.38 -0.02 2.31 16 29 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.12 2.89 7.93 -2.91 -0.02 2.86 16 34 H 0.08 2.67 6.26 -2.39 -0.01 2.65 16 35 H 0.09 4.35 4.70 -2.39 -0.01 4.33 16 36 H 0.06 2.42 7.98 -2.39 -0.02 2.40 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.07 2.37 6.57 -2.39 -0.02 2.35 16 42 H 0.05 2.21 5.87 -2.38 -0.01 2.19 16 Total: -1.00 -64.64 324.04 1.61 -63.04 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.00 Total: 20.73 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.78 Total: -32.38 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.59 Total: -82.12 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.60 Total: -15.91 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.64 1.61 -63.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255038727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.500 kcal (2) G-P(sol) polarization free energy of solvation -64.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds