Wall clock time and date at job start Mon Mar 30 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48494 * 109.47245 * 240.00088 * 3 2 1 5 5 H 1.48505 * 109.46577 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47302 * 119.99781 * 3 2 1 7 7 C 1.38820 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99804 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47193 * 154.99650 * 10 9 7 12 12 C 1.52997 * 109.47315 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46839 * 300.00305 * 12 11 10 14 14 O 1.42903 * 109.47232 * 179.97438 * 13 12 11 15 15 C 1.42899 * 114.00342 * 149.99933 * 14 13 12 16 16 C 1.50701 * 109.47103 * 180.02562 * 15 14 13 17 17 C 1.38235 * 119.99808 * 89.99842 * 16 15 14 18 18 C 1.38243 * 119.99602 * 179.97438 * 17 16 15 19 19 C 1.38231 * 120.00070 * 0.07188 * 18 17 16 20 20 C 1.38234 * 119.99892 * 359.90902 * 19 18 17 21 21 C 1.38230 * 119.99865 * 269.97588 * 16 15 14 22 22 C 1.52996 * 109.47416 * 59.99757 * 13 12 11 23 23 C 1.52997 * 109.47315 * 299.99952 * 22 13 12 24 24 H 0.96998 * 119.99739 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00922 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46690 * 34.99511 * 10 9 7 27 27 H 1.08994 * 109.47035 * 59.99915 * 11 10 9 28 28 H 1.09008 * 109.47248 * 300.00219 * 11 10 9 29 29 H 1.09000 * 109.47720 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.46783 * 59.99729 * 12 11 10 31 31 H 1.09004 * 109.46963 * 299.99314 * 13 12 11 32 32 H 1.08993 * 109.47528 * 59.99500 * 15 14 13 33 33 H 1.09001 * 109.46686 * 299.99411 * 15 14 13 34 34 H 1.08000 * 120.00616 * 359.70324 * 17 16 15 35 35 H 1.08001 * 119.99556 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.99633 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.99751 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.00371 * 0.02562 * 21 16 15 39 39 H 1.08994 * 109.47035 * 60.00226 * 22 13 12 40 40 H 1.09008 * 109.47248 * 179.97438 * 22 13 12 41 41 H 1.09004 * 109.46783 * 300.00270 * 23 22 13 42 42 H 1.09002 * 109.47205 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.1807 -4.7522 0.6102 12 6 1.9458 -6.0771 0.6108 13 6 2.3102 -6.4562 -0.8260 14 8 3.0253 -7.6934 -0.8255 15 6 2.8388 -8.4731 -2.0084 16 6 3.6337 -9.7488 -1.8996 17 6 3.0585 -10.8763 -1.3439 18 6 3.7875 -12.0467 -1.2447 19 6 5.0921 -12.0890 -1.6997 20 6 5.6671 -10.9616 -2.2558 21 6 4.9378 -9.7916 -2.3559 22 6 3.1874 -5.3609 -1.4357 23 6 2.4223 -4.0360 -1.4363 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.9687 -3.5506 0.5899 27 1 0.2701 -4.8584 0.0209 28 1 0.9215 -4.4822 1.6340 29 1 1.3208 -6.8575 1.0448 30 1 2.8564 -5.9705 1.2005 31 1 1.3996 -6.5628 -1.4156 32 1 3.1783 -7.9058 -2.8748 33 1 1.7816 -8.7129 -2.1225 34 1 2.0410 -10.8417 -0.9833 35 1 3.3382 -12.9275 -0.8102 36 1 5.6617 -13.0033 -1.6218 37 1 6.6862 -10.9948 -2.6116 38 1 5.3872 -8.9107 -2.7900 39 1 4.0979 -5.2544 -0.8461 40 1 3.4473 -5.6313 -2.4592 41 1 1.5117 -4.1426 -2.0259 42 1 3.0474 -3.2556 -1.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257817081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:46 Heat of formation + Delta-G solvation = -29.173415 kcal Electronic energy + Delta-G solvation = -20539.150255 eV Core-core repulsion = 17483.411433 eV Total energy + Delta-G solvation = -3055.738823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65120 -38.75074 -36.56521 -33.64708 -32.06255 -31.11682 -30.63297 -30.37254 -27.48184 -25.90490 -23.51240 -22.80327 -22.22935 -21.45956 -20.96985 -19.43955 -17.19758 -16.95703 -16.62193 -15.76796 -15.67563 -15.13172 -14.53266 -14.39074 -13.77275 -13.62775 -13.53477 -13.45036 -13.10937 -12.79077 -12.61207 -12.43279 -11.84538 -11.73261 -11.47363 -11.29116 -11.00550 -10.93277 -10.72865 -10.68831 -10.57549 -10.23337 -10.09364 -9.82911 -9.58879 -9.21339 -9.12971 -9.03752 -8.83560 -6.92730 -5.74081 -3.02409 1.05961 1.18887 3.39325 3.45478 3.49820 3.50794 3.97426 4.60708 4.61152 4.65933 4.78689 4.89692 5.02912 5.07498 5.15019 5.22225 5.33700 5.37488 5.44385 5.55569 5.60250 5.73322 5.75923 5.80499 5.82592 5.86488 5.93978 6.09679 6.22248 6.27478 6.33007 6.37196 6.39090 6.41386 6.52843 6.60770 6.73965 6.76421 7.01110 7.15327 7.32312 7.72404 8.45012 9.55756 10.14506 10.49347 11.48716 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047048 B = 0.002816 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.989581 B = 9940.551831 C =10278.429449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.176 3.824 11 C -0.121 4.121 12 C -0.107 4.107 13 C 0.091 3.909 14 O -0.378 6.378 15 C 0.101 3.899 16 C -0.085 4.085 17 C -0.100 4.100 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.099 4.099 22 C -0.136 4.136 23 C -0.132 4.132 24 H 0.255 0.745 25 H 0.383 0.617 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -23.596 -4.314 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.066 3.934 11 C -0.160 4.160 12 C -0.146 4.146 13 C 0.034 3.966 14 O -0.298 6.298 15 C 0.025 3.975 16 C -0.085 4.085 17 C -0.118 4.118 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.174 4.174 23 C -0.173 4.173 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.221 -23.478 -4.143 24.910 hybrid contribution 0.043 1.031 -0.333 1.084 sum 7.264 -22.447 -4.477 24.014 Atomic orbital electron populations 1.69652 1.05091 1.25692 1.57873 1.24740 0.95512 0.97651 1.03188 0.86280 0.78520 0.83645 0.77834 1.21331 1.21732 1.21286 1.19212 0.90960 0.84180 1.42455 0.91271 1.42432 1.05764 0.99815 1.88584 1.20242 0.94432 0.85959 0.92727 1.21779 0.98739 0.93680 1.01759 1.21525 1.00840 0.97380 0.94825 1.22231 0.93773 0.82899 0.97693 1.87973 1.71235 1.32096 1.38492 1.21308 0.97855 0.89391 0.88976 1.19693 0.94840 0.94440 0.99551 1.21095 1.00205 0.92570 0.97928 1.21146 0.94735 0.98008 1.00408 1.21181 0.95406 0.98431 0.98640 1.21154 0.99929 0.93128 1.00040 1.21110 0.93515 0.98040 0.99042 1.22021 0.99591 0.95773 1.00025 1.22222 0.99490 0.94612 1.00976 0.93519 0.78341 0.93487 0.92223 0.91297 0.91948 0.91278 0.92376 0.92521 0.92640 0.85923 0.86004 0.86144 0.85981 0.85869 0.91541 0.92926 0.92752 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.31 5.12 -53.42 -0.27 -18.59 16 10 C 0.18 3.53 2.77 -67.93 -0.19 3.34 16 11 C -0.12 -2.03 5.39 -26.73 -0.14 -2.17 16 12 C -0.11 -1.54 5.57 -26.73 -0.15 -1.69 16 13 C 0.09 1.27 2.61 -26.73 -0.07 1.20 16 14 O -0.38 -5.22 9.97 -35.23 -0.35 -5.57 16 15 C 0.10 1.14 5.87 36.01 0.21 1.35 16 16 C -0.09 -0.93 5.51 -104.63 -0.58 -1.51 16 17 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 18 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 19 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 21 C -0.10 -1.01 9.70 -39.59 -0.38 -1.39 16 22 C -0.14 -2.01 5.54 -26.73 -0.15 -2.16 16 23 C -0.13 -2.39 5.50 -26.73 -0.15 -2.53 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 26 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.77 7.79 -51.93 -0.40 0.37 16 32 H 0.06 0.60 7.81 -51.93 -0.41 0.19 16 33 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.71 7.87 -51.92 -0.41 0.31 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -30.87 343.56 -10.16 -41.03 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.99 Total: 6.72 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.42 Total: -18.63 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.45 Total: -46.26 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.35 Total: -5.57 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.87 -10.16 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257817081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.853 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds