Wall clock time and date at job start Mon Mar 30 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48494 * 109.47245 * 240.00088 * 3 2 1 5 5 H 1.48505 * 109.46577 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47302 * 119.99781 * 3 2 1 7 7 C 1.38820 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99804 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47193 * 154.99650 * 10 9 7 12 12 C 1.52997 * 109.47315 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46839 * 300.00305 * 12 11 10 14 14 O 1.42903 * 109.47232 * 179.97438 * 13 12 11 15 15 C 1.42899 * 114.00342 * 149.99933 * 14 13 12 16 16 C 1.50701 * 109.47103 * 180.02562 * 15 14 13 17 17 C 1.38235 * 119.99808 * 89.99842 * 16 15 14 18 18 C 1.38243 * 119.99602 * 179.97438 * 17 16 15 19 19 C 1.38231 * 120.00070 * 0.07188 * 18 17 16 20 20 C 1.38234 * 119.99892 * 359.90902 * 19 18 17 21 21 C 1.38230 * 119.99865 * 269.97588 * 16 15 14 22 22 C 1.52996 * 109.47416 * 59.99757 * 13 12 11 23 23 C 1.52997 * 109.47315 * 299.99952 * 22 13 12 24 24 H 0.96998 * 119.99739 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00922 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46690 * 34.99511 * 10 9 7 27 27 H 1.08994 * 109.47035 * 59.99915 * 11 10 9 28 28 H 1.09008 * 109.47248 * 300.00219 * 11 10 9 29 29 H 1.09000 * 109.47720 * 180.02562 * 12 11 10 30 30 H 1.09004 * 109.46783 * 59.99729 * 12 11 10 31 31 H 1.09004 * 109.46963 * 299.99314 * 13 12 11 32 32 H 1.08993 * 109.47528 * 59.99500 * 15 14 13 33 33 H 1.09001 * 109.46686 * 299.99411 * 15 14 13 34 34 H 1.08000 * 120.00616 * 359.70324 * 17 16 15 35 35 H 1.08001 * 119.99556 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.99633 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.99751 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.00371 * 0.02562 * 21 16 15 39 39 H 1.08994 * 109.47035 * 60.00226 * 22 13 12 40 40 H 1.09008 * 109.47248 * 179.97438 * 22 13 12 41 41 H 1.09004 * 109.46783 * 300.00270 * 23 22 13 42 42 H 1.09002 * 109.47205 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.1807 -4.7522 0.6102 12 6 1.9458 -6.0771 0.6108 13 6 2.3102 -6.4562 -0.8260 14 8 3.0253 -7.6934 -0.8255 15 6 2.8388 -8.4731 -2.0084 16 6 3.6337 -9.7488 -1.8996 17 6 3.0585 -10.8763 -1.3439 18 6 3.7875 -12.0467 -1.2447 19 6 5.0921 -12.0890 -1.6997 20 6 5.6671 -10.9616 -2.2558 21 6 4.9378 -9.7916 -2.3559 22 6 3.1874 -5.3609 -1.4357 23 6 2.4223 -4.0360 -1.4363 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.9687 -3.5506 0.5899 27 1 0.2701 -4.8584 0.0209 28 1 0.9215 -4.4822 1.6340 29 1 1.3208 -6.8575 1.0448 30 1 2.8564 -5.9705 1.2005 31 1 1.3996 -6.5628 -1.4156 32 1 3.1783 -7.9058 -2.8748 33 1 1.7816 -8.7129 -2.1225 34 1 2.0410 -10.8417 -0.9833 35 1 3.3382 -12.9275 -0.8102 36 1 5.6617 -13.0033 -1.6218 37 1 6.6862 -10.9948 -2.6116 38 1 5.3872 -8.9107 -2.7900 39 1 4.0979 -5.2544 -0.8461 40 1 3.4473 -5.6313 -2.4592 41 1 1.5117 -4.1426 -2.0259 42 1 3.0474 -3.2556 -1.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257817081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:46 Heat of formation + Delta-G solvation = -45.793243 kcal Electronic energy + Delta-G solvation = -20539.870945 eV Core-core repulsion = 17483.411433 eV Total energy + Delta-G solvation = -3056.459513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53158 -39.80013 -37.86285 -35.43094 -33.16002 -32.25856 -31.78253 -31.69545 -29.01890 -26.85324 -25.44735 -23.59101 -23.41548 -22.39524 -22.20813 -20.87244 -19.10838 -17.83598 -17.66398 -16.92600 -16.60371 -16.43334 -15.86895 -15.43475 -15.34681 -15.17338 -14.71574 -14.30087 -14.22173 -14.04373 -13.73098 -13.44726 -13.25461 -13.08044 -12.88752 -12.76001 -12.41852 -12.22704 -12.17271 -12.02254 -11.87813 -11.82765 -11.56206 -11.39523 -11.24843 -10.87716 -10.33259 -9.81071 -9.74268 -8.99731 -7.93698 -5.21816 0.35605 0.51137 1.46544 1.49395 1.55462 2.54554 2.59514 3.11542 3.38857 3.75804 3.83937 3.87300 3.94116 4.02319 4.16881 4.27863 4.30658 4.32608 4.39086 4.40423 4.48144 4.51513 4.59775 4.66370 4.70109 4.78486 4.93938 4.97128 5.08440 5.11283 5.14635 5.17224 5.26125 5.29712 5.48191 5.54478 5.56583 5.62027 5.63342 5.69363 6.11070 6.28582 6.31247 7.34639 8.11628 8.35222 9.29693 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047048 B = 0.002816 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.989581 B = 9940.551831 C =10278.429449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.738 5.738 10 C 0.170 3.830 11 C -0.111 4.111 12 C -0.100 4.100 13 C 0.097 3.903 14 O -0.389 6.389 15 C 0.098 3.902 16 C -0.106 4.106 17 C -0.113 4.113 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.251 0.749 25 H 0.373 0.627 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 -25.460 -4.555 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.062 3.938 11 C -0.149 4.149 12 C -0.138 4.138 13 C 0.039 3.961 14 O -0.309 6.309 15 C 0.022 3.978 16 C -0.106 4.106 17 C -0.131 4.131 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.149 4.149 21 C -0.134 4.134 22 C -0.165 4.165 23 C -0.162 4.162 24 H 0.059 0.941 25 H 0.204 0.796 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.342 -25.387 -4.390 27.081 hybrid contribution -0.239 1.484 -0.266 1.527 sum 8.102 -23.903 -4.655 25.665 Atomic orbital electron populations 1.69807 1.06525 1.26039 1.59718 1.25540 0.96392 1.00985 1.04002 0.85248 0.77232 0.79389 0.78141 1.20507 1.22124 1.20468 1.19570 0.91301 0.85382 1.40813 0.90987 1.42636 1.05443 1.00998 1.88715 1.20482 0.94192 0.85071 0.94081 1.21638 0.98499 0.93800 1.00996 1.21437 1.00645 0.96274 0.95476 1.22088 0.93886 0.82877 0.97216 1.87956 1.71283 1.31824 1.39851 1.21456 0.98769 0.89421 0.88155 1.19798 0.95366 0.94612 1.00846 1.21311 1.00863 0.92861 0.98109 1.21473 0.94965 0.98364 1.00030 1.21548 0.95524 0.99208 0.97662 1.21457 1.00824 0.92881 0.99789 1.21299 0.93643 0.98876 0.99562 1.21913 0.99066 0.94275 1.01205 1.22000 0.99367 0.95846 0.98983 0.94062 0.79569 0.94527 0.91878 0.91976 0.90062 0.91612 0.91356 0.92033 0.91523 0.85157 0.83870 0.83710 0.84092 0.85589 0.91940 0.91275 0.92996 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.48 9.93 84.04 0.83 -12.65 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -37.85 5.12 -322.92 -1.65 -39.51 16 10 C 0.17 6.81 2.77 44.99 0.12 6.93 16 11 C -0.11 -3.64 5.39 30.59 0.16 -3.47 16 12 C -0.10 -2.71 5.57 30.59 0.17 -2.54 16 13 C 0.10 2.51 2.61 30.59 0.08 2.59 16 14 O -0.39 -10.01 9.97 -148.98 -1.49 -11.50 16 15 C 0.10 2.04 5.87 71.24 0.42 2.46 16 16 C -0.11 -2.18 5.51 -19.87 -0.11 -2.29 16 17 C -0.11 -2.07 9.70 22.27 0.22 -1.85 16 18 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 19 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 20 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 21 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 22 C -0.13 -3.58 5.54 30.59 0.17 -3.41 16 23 C -0.12 -4.35 5.50 30.59 0.17 -4.18 16 24 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 25 H 0.37 20.38 7.80 -92.71 -0.72 19.65 16 26 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 1.65 7.79 -2.38 -0.02 1.64 16 32 H 0.06 1.20 7.81 -2.39 -0.02 1.18 16 33 H 0.07 1.22 8.03 -2.39 -0.02 1.20 16 34 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.75 7.87 -2.38 -0.02 1.73 16 41 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.83 343.56 3.02 -62.81 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.26 Total: 28.69 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.59 Total: -29.56 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -1.37 Total: -99.21 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -1.49 Total: -11.50 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -65.83 3.02 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257817081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.017 kcal (2) G-P(sol) polarization free energy of solvation -65.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds