Wall clock time and date at job start Mon Mar 30 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 120.00138 * 2 1 4 4 C 1.38219 * 120.00154 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99566 * 359.70340 * 4 3 2 6 6 C 1.38209 * 120.00089 * 0.55105 * 5 4 3 7 7 C 1.50712 * 120.00008 * 179.74724 * 6 5 4 8 8 H 1.08995 * 110.28406 * 180.40093 * 7 6 5 9 9 C 1.54257 * 110.32186 * 58.27049 * 7 6 5 10 10 C 1.54381 * 105.14978 * 241.05248 * 9 7 6 11 11 N 1.48720 * 104.51692 * 336.27274 * 10 9 7 12 12 C 1.46900 * 111.01831 * 158.96284 * 11 10 9 13 13 C 1.53001 * 109.46857 * 54.49058 * 12 11 10 14 14 H 1.09000 * 109.46892 * 60.00179 * 13 12 11 15 15 O 1.42900 * 109.47349 * 300.00465 * 13 12 11 16 16 C 1.50697 * 109.47186 * 180.02562 * 13 12 11 17 17 H 1.08003 * 120.00260 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99836 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00317 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99849 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47040 * 60.00253 * 20 18 16 22 22 H 1.48498 * 109.47159 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47294 * 300.00424 * 20 18 16 24 24 C 1.48567 * 104.28820 * 39.36098 * 11 10 9 25 25 C 1.38214 * 120.00231 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46618 * 270.02320 * 1 2 3 27 27 H 1.08995 * 109.46822 * 30.02150 * 1 2 3 28 28 H 1.08999 * 109.47335 * 150.02232 * 1 2 3 29 29 H 1.07998 * 120.00067 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.00097 * 179.97438 * 4 3 2 31 31 H 1.08002 * 119.99918 * 180.30013 * 5 4 3 32 32 H 1.09002 * 110.32715 * 0.02562 * 9 7 6 33 33 H 1.08998 * 110.32251 * 122.10830 * 9 7 6 34 34 H 1.09004 * 110.40867 * 94.98012 * 10 9 7 35 35 H 1.08996 * 110.41187 * 217.42234 * 10 9 7 36 36 H 1.09003 * 109.47294 * 174.49077 * 12 11 10 37 37 H 1.09000 * 109.47223 * 294.49440 * 12 11 10 38 38 H 0.96701 * 113.99579 * 299.99886 * 15 13 12 39 39 H 0.96998 * 120.00087 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.41133 * 201.79165 * 24 11 10 41 41 H 1.09004 * 110.50861 * 79.40616 * 24 11 10 42 42 H 1.08003 * 119.99687 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0051 6 6 3.5806 -1.1970 -0.0002 7 6 4.3341 -2.5022 0.0002 8 1 3.6377 -3.3406 -0.0115 9 6 5.2558 -2.5883 1.2342 10 6 6.6851 -2.7061 0.6628 11 7 6.4958 -3.2628 -0.7032 12 6 7.6602 -2.9804 -1.5532 13 6 8.9283 -3.4931 -0.8677 14 1 8.8463 -4.5684 -0.7093 15 8 9.0875 -2.8369 0.3917 16 6 10.1229 -3.2029 -1.7393 17 1 9.9909 -2.7025 -2.6873 18 6 11.3844 -3.5753 -1.3261 19 7 11.5453 -4.1842 -0.1716 20 14 12.8652 -3.2163 -2.4070 21 1 12.9764 -1.7513 -2.6234 22 1 14.0960 -3.7137 -1.7415 23 1 12.7001 -3.8987 -3.7154 24 6 5.2833 -2.5736 -1.2152 25 6 2.1981 -1.1969 0.0005 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 5.3517 -0.0001 0.0096 32 1 5.1628 -1.6868 1.8399 33 1 5.0118 -3.4691 1.8282 34 1 7.1558 -1.7243 0.6110 35 1 7.2833 -3.3838 1.2719 36 1 7.5387 -3.4810 -2.5139 37 1 7.7422 -1.9051 -1.7116 38 1 9.1670 -1.8753 0.3269 39 1 12.4328 -4.4466 0.1188 40 1 4.8284 -3.1519 -2.0194 41 1 5.5321 -1.5709 -1.5628 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333314355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:35 Heat of formation + Delta-G solvation = -29.907524 kcal Electronic energy + Delta-G solvation = -21182.617989 eV Core-core repulsion = 18126.847332 eV Total energy + Delta-G solvation = -3055.770656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.96869 -38.24185 -35.66486 -33.19357 -32.18842 -32.03877 -30.31056 -28.11242 -27.56365 -26.89544 -24.47829 -22.36184 -21.95202 -21.27158 -20.11387 -19.18318 -17.01498 -16.70174 -15.90443 -15.17476 -14.94994 -14.61359 -14.40450 -14.12925 -14.00304 -13.83631 -13.38657 -13.15766 -12.83146 -12.62295 -12.40017 -12.35924 -11.99582 -11.60232 -11.37173 -11.18783 -11.14264 -11.03490 -10.91807 -10.78788 -10.55123 -10.39813 -10.23835 -9.91637 -8.98895 -8.82462 -8.61077 -8.56092 -7.99129 -7.80409 -6.00291 -4.18527 1.30617 1.34922 3.28916 3.34337 3.36055 3.68887 4.35140 4.48986 4.70317 4.79371 4.95312 5.04362 5.10746 5.15267 5.17622 5.26472 5.38526 5.43132 5.47198 5.57957 5.63764 5.71313 5.86556 5.98436 6.03361 6.06217 6.12946 6.16221 6.21086 6.34282 6.39967 6.43945 6.50572 6.57173 6.68785 6.78781 6.96486 6.99788 7.50113 7.57165 7.76781 7.93703 8.20600 8.84158 9.35338 9.57705 11.03810 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038864 B = 0.003450 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.286497 B = 8113.791104 C = 8323.107660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.061 4.061 7 C -0.056 4.056 8 H 0.082 0.918 9 C -0.124 4.124 10 C 0.052 3.948 11 N -0.509 5.509 12 C 0.021 3.979 13 C 0.233 3.767 14 H 0.063 0.937 15 O -0.560 6.560 16 C -0.573 4.573 17 H 0.054 0.946 18 C 0.080 3.920 19 N -0.858 5.858 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.039 3.961 25 C -0.119 4.119 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.340 0.660 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 8.501 1.401 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.136 4.136 6 C -0.061 4.061 7 C -0.075 4.075 8 H 0.100 0.900 9 C -0.162 4.162 10 C -0.075 4.075 11 N -0.233 5.233 12 C -0.107 4.107 13 C 0.175 3.825 14 H 0.081 0.919 15 O -0.363 6.363 16 C -0.612 4.612 17 H 0.072 0.928 18 C -0.126 4.126 19 N -0.494 5.494 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.090 4.090 25 C -0.137 4.137 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.184 0.816 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.097 7.188 1.747 20.480 hybrid contribution 1.088 1.700 -1.039 2.270 sum -18.009 8.888 0.707 20.096 Atomic orbital electron populations 1.20772 0.91423 1.02592 1.02156 1.19879 0.95870 0.93216 0.99949 1.20968 0.94264 0.97305 1.02324 1.21121 0.94252 0.97966 0.99928 1.21045 1.00129 0.91937 1.00484 1.19933 0.93405 0.94904 0.97871 1.20930 0.96522 0.93742 0.96257 0.89968 1.22590 0.95668 1.01594 0.96316 1.23222 0.94016 0.99326 0.90953 1.65486 1.02974 1.52097 1.02746 1.23169 0.92341 0.98058 0.97132 1.19365 0.87875 0.93814 0.81441 0.91902 1.86648 1.95489 1.21159 1.32993 1.21578 0.92395 1.41606 1.05585 0.92800 1.25019 0.98923 0.93999 0.94654 1.70064 1.22641 1.37473 1.19185 0.86735 0.82116 0.78705 0.80784 1.20227 1.21191 1.20149 1.23216 0.92106 0.97380 0.96262 1.20942 0.93508 0.97470 1.01817 0.91336 0.91741 0.91624 0.86482 0.86218 0.86110 0.91770 0.91331 0.94275 0.88040 0.91313 0.95939 0.81648 0.92938 0.90886 0.94113 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.13 -1.36 9.70 -39.58 -0.38 -1.74 16 4 C -0.11 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.12 -1.49 8.10 -39.59 -0.32 -1.81 16 6 C -0.06 -0.77 4.75 -104.62 -0.50 -1.26 16 7 C -0.06 -0.75 3.28 -90.39 -0.30 -1.05 16 8 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 9 C -0.12 -1.77 6.41 -25.35 -0.16 -1.93 16 10 C 0.05 0.92 4.65 -2.09 -0.01 0.91 16 11 N -0.51 -9.45 5.49 -229.82 -1.26 -10.71 16 12 C 0.02 0.44 4.86 -3.82 -0.02 0.42 16 13 C 0.23 5.86 2.95 -27.88 -0.08 5.78 16 14 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 15 O -0.56 -13.79 9.06 -35.23 -0.32 -14.11 16 16 C -0.57 -15.72 8.76 -34.44 -0.30 -16.02 16 17 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 18 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 19 N -0.86 -25.31 12.84 55.43 0.71 -24.60 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.04 0.60 5.94 -2.18 -0.01 0.58 16 25 C -0.12 -1.36 9.34 -39.59 -0.37 -1.73 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.58 7.75 -52.49 -0.41 1.17 16 32 H 0.06 0.87 7.31 -51.93 -0.38 0.49 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.69 6.87 -51.93 -0.36 0.33 16 35 H 0.10 2.05 6.81 -51.93 -0.35 1.69 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.02 0.46 7.88 -51.93 -0.41 0.05 16 38 H 0.34 7.60 8.33 45.56 0.38 7.98 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.64 6.59 -51.93 -0.34 0.30 16 42 H 0.12 1.18 7.97 -52.48 -0.42 0.76 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -29.77 334.79 -10.09 -39.86 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.04 Total: 7.76 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.20 Total: -19.40 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.55 Total: -35.31 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.32 Total: -14.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.77 -10.09 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333314355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.950 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds