Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 120.00138 * 2 1 4 4 C 1.38219 * 120.00154 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99566 * 359.70340 * 4 3 2 6 6 C 1.38209 * 120.00089 * 0.55105 * 5 4 3 7 7 C 1.50712 * 120.00008 * 179.74724 * 6 5 4 8 8 H 1.08995 * 110.28406 * 180.40093 * 7 6 5 9 9 C 1.54257 * 110.32186 * 58.27049 * 7 6 5 10 10 C 1.54381 * 105.14978 * 241.05248 * 9 7 6 11 11 N 1.48720 * 104.51692 * 336.27274 * 10 9 7 12 12 C 1.46900 * 111.01831 * 158.96284 * 11 10 9 13 13 C 1.53001 * 109.46857 * 54.49058 * 12 11 10 14 14 H 1.09000 * 109.46892 * 60.00179 * 13 12 11 15 15 O 1.42900 * 109.47349 * 300.00465 * 13 12 11 16 16 C 1.50697 * 109.47186 * 180.02562 * 13 12 11 17 17 H 1.08003 * 120.00260 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99836 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00317 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99849 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47040 * 60.00253 * 20 18 16 22 22 H 1.48498 * 109.47159 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47294 * 300.00424 * 20 18 16 24 24 C 1.48567 * 104.28820 * 39.36098 * 11 10 9 25 25 C 1.38214 * 120.00231 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46618 * 270.02320 * 1 2 3 27 27 H 1.08995 * 109.46822 * 30.02150 * 1 2 3 28 28 H 1.08999 * 109.47335 * 150.02232 * 1 2 3 29 29 H 1.07998 * 120.00067 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.00097 * 179.97438 * 4 3 2 31 31 H 1.08002 * 119.99918 * 180.30013 * 5 4 3 32 32 H 1.09002 * 110.32715 * 0.02562 * 9 7 6 33 33 H 1.08998 * 110.32251 * 122.10830 * 9 7 6 34 34 H 1.09004 * 110.40867 * 94.98012 * 10 9 7 35 35 H 1.08996 * 110.41187 * 217.42234 * 10 9 7 36 36 H 1.09003 * 109.47294 * 174.49077 * 12 11 10 37 37 H 1.09000 * 109.47223 * 294.49440 * 12 11 10 38 38 H 0.96701 * 113.99579 * 299.99886 * 15 13 12 39 39 H 0.96998 * 120.00087 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.41133 * 201.79165 * 24 11 10 41 41 H 1.09004 * 110.50861 * 79.40616 * 24 11 10 42 42 H 1.08003 * 119.99687 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0051 6 6 3.5806 -1.1970 -0.0002 7 6 4.3341 -2.5022 0.0002 8 1 3.6377 -3.3406 -0.0115 9 6 5.2558 -2.5883 1.2342 10 6 6.6851 -2.7061 0.6628 11 7 6.4958 -3.2628 -0.7032 12 6 7.6602 -2.9804 -1.5532 13 6 8.9283 -3.4931 -0.8677 14 1 8.8463 -4.5684 -0.7093 15 8 9.0875 -2.8369 0.3917 16 6 10.1229 -3.2029 -1.7393 17 1 9.9909 -2.7025 -2.6873 18 6 11.3844 -3.5753 -1.3261 19 7 11.5453 -4.1842 -0.1716 20 14 12.8652 -3.2163 -2.4070 21 1 12.9764 -1.7513 -2.6234 22 1 14.0960 -3.7137 -1.7415 23 1 12.7001 -3.8987 -3.7154 24 6 5.2833 -2.5736 -1.2152 25 6 2.1981 -1.1969 0.0005 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 5.3517 -0.0001 0.0096 32 1 5.1628 -1.6868 1.8399 33 1 5.0118 -3.4691 1.8282 34 1 7.1558 -1.7243 0.6110 35 1 7.2833 -3.3838 1.2719 36 1 7.5387 -3.4810 -2.5139 37 1 7.7422 -1.9051 -1.7116 38 1 9.1670 -1.8753 0.3269 39 1 12.4328 -4.4466 0.1188 40 1 4.8284 -3.1519 -2.0194 41 1 5.5321 -1.5709 -1.5628 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333314355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = -48.622033 kcal Electronic energy + Delta-G solvation = -21183.429511 eV Core-core repulsion = 18126.847332 eV Total energy + Delta-G solvation = -3056.582178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01288 -39.51842 -37.40949 -34.45314 -34.15086 -33.05472 -31.59917 -29.66019 -28.97925 -27.65442 -26.30552 -23.35025 -23.04568 -22.83459 -21.68948 -20.24901 -19.05679 -17.66283 -17.05114 -16.69093 -16.46424 -16.25788 -15.91740 -15.60085 -15.22324 -14.84051 -14.61868 -14.43739 -13.98283 -13.88113 -13.54076 -13.40204 -13.09537 -13.01293 -12.91027 -12.84374 -12.73562 -12.42582 -12.19519 -12.15282 -12.03175 -11.89175 -11.46482 -11.38379 -11.02804 -10.71630 -9.99586 -9.65570 -9.48348 -9.26420 -8.14209 -6.40417 0.44768 0.50710 1.39861 1.41605 1.49780 2.37726 2.82861 3.11291 3.16884 3.73043 3.81443 3.90857 4.04041 4.10732 4.20284 4.24762 4.31753 4.43397 4.44875 4.51496 4.55740 4.61621 4.68931 4.82373 4.86913 4.87404 4.92401 5.01870 5.04747 5.15164 5.18903 5.25840 5.33928 5.37241 5.60119 5.61496 5.70735 5.71833 5.77575 5.97105 6.08992 6.16371 6.23237 6.71517 7.30937 7.50102 8.89913 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038864 B = 0.003450 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.286497 B = 8113.791104 C = 8323.107660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.122 4.122 5 C -0.136 4.136 6 C -0.073 4.073 7 C -0.045 4.045 8 H 0.094 0.906 9 C -0.114 4.114 10 C 0.057 3.943 11 N -0.522 5.522 12 C 0.039 3.961 13 C 0.236 3.764 14 H 0.021 0.979 15 O -0.567 6.567 16 C -0.589 4.589 17 H 0.058 0.942 18 C 0.027 3.973 19 N -0.898 5.898 20 Si 0.960 3.040 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.041 3.959 25 C -0.127 4.127 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.349 0.651 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.923 9.909 0.707 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.140 4.140 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.064 4.064 8 H 0.113 0.887 9 C -0.152 4.152 10 C -0.071 4.071 11 N -0.246 5.246 12 C -0.090 4.090 13 C 0.178 3.822 14 H 0.039 0.961 15 O -0.371 6.371 16 C -0.627 4.627 17 H 0.076 0.924 18 C -0.176 4.176 19 N -0.534 5.534 20 Si 0.785 3.215 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.087 4.087 25 C -0.144 4.144 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.899 8.607 1.045 22.626 hybrid contribution 1.568 1.286 -0.793 2.177 sum -19.330 9.893 0.252 21.716 Atomic orbital electron populations 1.20826 0.89301 1.03614 1.03070 1.20255 0.97501 0.92812 0.98673 1.21305 0.94038 0.98465 1.01284 1.21350 0.94976 0.98041 0.99621 1.21058 0.99694 0.92799 1.01849 1.19851 0.94026 0.94131 0.99336 1.20829 0.96069 0.95080 0.94389 0.88744 1.22492 0.93525 1.02324 0.96850 1.23035 0.95816 0.97953 0.90266 1.65417 1.03121 1.53132 1.02939 1.22789 0.91575 0.97824 0.96802 1.19116 0.89633 0.91830 0.81574 0.96104 1.86614 1.95734 1.21910 1.32801 1.21973 0.93443 1.41350 1.05967 0.92393 1.25887 1.02074 0.93665 0.95928 1.70207 1.23329 1.38790 1.21121 0.85607 0.78126 0.78905 0.78888 1.19209 1.20942 1.19386 1.23250 0.91004 0.96990 0.97434 1.21158 0.93025 0.98681 1.01579 0.90358 0.90517 0.90894 0.84177 0.84821 0.87384 0.90846 0.90744 0.94763 0.91256 0.91466 0.95550 0.80627 0.92955 0.90081 0.94260 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 2 C -0.09 -1.67 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 4 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 5 C -0.14 -3.31 8.10 22.27 0.18 -3.13 16 6 C -0.07 -1.74 4.75 -19.86 -0.09 -1.83 16 7 C -0.04 -1.15 3.28 -10.64 -0.03 -1.19 16 8 H 0.09 2.21 7.93 -2.39 -0.02 2.19 16 9 C -0.11 -3.20 6.41 31.49 0.20 -3.00 16 10 C 0.06 2.05 4.65 86.42 0.40 2.45 16 11 N -0.52 -19.62 5.49 -881.02 -4.83 -24.46 16 12 C 0.04 1.65 4.86 86.30 0.42 2.07 16 13 C 0.24 12.32 2.95 29.85 0.09 12.41 16 14 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 15 O -0.57 -28.97 9.06 -148.98 -1.35 -30.32 16 16 C -0.59 -32.79 8.76 25.60 0.22 -32.56 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.03 1.53 5.40 84.66 0.46 1.99 16 19 N -0.90 -54.14 12.84 21.45 0.28 -53.87 16 20 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.04 1.24 5.94 86.45 0.51 1.75 16 25 C -0.13 -2.59 9.34 22.27 0.21 -2.38 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 28 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 29 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.11 2.83 7.75 -2.91 -0.02 2.81 16 32 H 0.07 1.94 7.31 -2.39 -0.02 1.92 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.03 1.24 6.87 -2.38 -0.02 1.23 16 35 H 0.07 2.93 6.81 -2.39 -0.02 2.91 16 36 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.03 1.10 7.88 -2.39 -0.02 1.08 16 38 H 0.35 16.11 8.33 -74.06 -0.62 15.50 16 39 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.21 6.59 -2.39 -0.02 1.20 16 42 H 0.13 2.27 7.97 -2.91 -0.02 2.25 16 Total: -1.00 -64.46 334.79 0.10 -64.36 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.38 Total: 28.92 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 3.60 Total: -30.31 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -4.56 Total: -78.33 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.35 Total: -30.32 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.46 0.10 -64.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333314355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.738 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds