Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00279 * 2 1 4 4 C 1.38218 * 120.00156 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99610 * 0.04745 * 4 3 2 6 6 C 1.38217 * 120.00325 * 359.90497 * 5 4 3 7 7 C 1.50700 * 119.99769 * 180.34399 * 6 5 4 8 8 H 1.09005 * 110.62492 * 180.42260 * 7 6 5 9 9 C 1.55136 * 110.71010 * 303.53133 * 7 6 5 10 10 C 1.55114 * 101.55969 * 153.90905 * 9 7 6 11 11 N 1.47848 * 104.90156 * 323.15908 * 10 9 7 12 12 C 1.46899 * 110.99614 * 146.24225 * 11 10 9 13 13 C 1.53002 * 109.46851 * 173.32062 * 12 11 10 14 14 H 1.09006 * 109.46878 * 58.42162 * 13 12 11 15 15 O 1.42895 * 109.47788 * 298.42043 * 13 12 11 16 16 C 1.50707 * 109.46901 * 178.41709 * 13 12 11 17 17 H 1.07999 * 120.00053 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99747 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00018 * 180.02562 * 18 16 13 20 20 Si 1.86800 * 120.00162 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.46970 * 90.00559 * 20 18 16 22 22 H 1.48504 * 109.47486 * 210.00269 * 20 18 16 23 23 H 1.48497 * 109.47229 * 330.00688 * 20 18 16 24 24 C 1.47439 * 108.57103 * 23.97506 * 11 10 9 25 25 C 1.38213 * 119.99544 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47383 * 270.02716 * 1 2 3 27 27 H 1.09002 * 109.46719 * 30.01867 * 1 2 3 28 28 H 1.08996 * 109.47511 * 150.02324 * 1 2 3 29 29 H 1.07994 * 120.00106 * 359.97438 * 3 2 1 30 30 H 1.07992 * 120.00114 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.99937 * 179.97438 * 5 4 3 32 32 H 1.09001 * 110.99312 * 272.13124 * 9 7 6 33 33 H 1.09002 * 110.98975 * 35.94221 * 9 7 6 34 34 H 1.08994 * 110.42391 * 204.24169 * 10 9 7 35 35 H 1.08996 * 110.21694 * 81.97185 * 10 9 7 36 36 H 1.08999 * 109.47322 * 293.32299 * 12 11 10 37 37 H 1.08999 * 109.47314 * 53.32806 * 12 11 10 38 38 H 0.96705 * 113.99208 * 300.00156 * 15 13 12 39 39 H 0.97005 * 120.00530 * 179.97438 * 19 18 16 40 40 H 1.09007 * 109.88852 * 239.60501 * 24 11 10 41 41 H 1.08993 * 110.02471 * 118.48988 * 24 11 10 42 42 H 1.08002 * 120.00512 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0001 6 6 3.5805 -1.1971 0.0011 7 6 4.3340 -2.5022 0.0084 8 1 3.6426 -3.3448 0.0007 9 6 5.3075 -2.5804 -1.1969 10 6 6.3893 -3.5539 -0.6601 11 7 6.5268 -3.2168 0.7728 12 6 6.8285 -4.4141 1.5686 13 6 7.1272 -4.0049 3.0124 14 1 6.2692 -3.4733 3.4242 15 8 8.2733 -3.1520 3.0384 16 6 7.3985 -5.2364 3.8376 17 1 7.3612 -6.2132 3.3784 18 6 7.6934 -5.1160 5.1791 19 7 7.9307 -6.1906 5.8992 20 14 7.7572 -3.4266 5.9735 21 1 6.4115 -3.0723 6.4920 22 1 8.7309 -3.4431 7.0946 23 1 8.1798 -2.4213 4.9656 24 6 5.2767 -2.5811 1.2277 25 6 2.1979 -1.1970 0.0005 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5134 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 5.3517 -0.0002 0.0001 32 1 4.8095 -2.9915 -2.0751 33 1 5.7375 -1.6029 -1.4157 34 1 7.3344 -3.3961 -1.1795 35 1 6.0587 -4.5859 -0.7772 36 1 5.9713 -5.0871 1.5517 37 1 7.6968 -4.9209 1.1477 38 1 9.0757 -3.5607 2.6858 39 1 8.1385 -6.1060 6.8429 40 1 5.4850 -1.5783 1.6009 41 1 4.8174 -3.1810 2.0133 42 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333314356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -27.933076 kcal Electronic energy + Delta-G solvation = -21192.422790 eV Core-core repulsion = 18136.737752 eV Total energy + Delta-G solvation = -3055.685038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98094 -38.34787 -35.89492 -33.40842 -32.19853 -32.12445 -30.45246 -28.25500 -27.86367 -26.89171 -24.59706 -22.59454 -22.15067 -21.01886 -20.22211 -19.20432 -17.32210 -16.82944 -15.96609 -15.33862 -14.96536 -14.76532 -14.43718 -14.39315 -13.92815 -13.84891 -13.25252 -13.16649 -12.93776 -12.53449 -12.51559 -12.38851 -12.32507 -12.19918 -11.62556 -11.34550 -11.20250 -11.10502 -10.90716 -10.82551 -10.58731 -10.51522 -10.30624 -9.85018 -8.98040 -8.82738 -8.59231 -8.56667 -8.19748 -7.75497 -6.10689 -4.21804 1.30608 1.35054 3.41932 3.51355 3.68048 3.79958 4.37601 4.56758 4.57381 4.70741 4.80868 4.91482 5.00963 5.11220 5.14499 5.25137 5.27267 5.41005 5.43343 5.48021 5.55638 5.64876 5.70274 5.82130 5.90318 5.92900 5.97854 6.03355 6.08142 6.14001 6.20036 6.33646 6.39493 6.45676 6.52315 6.64073 6.66643 6.98019 7.28737 7.42710 7.52678 7.73555 8.32078 8.86107 9.15724 9.54873 10.99985 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004305 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.485839 B = 6502.208301 C = 7036.976774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.059 4.059 7 C -0.075 4.075 8 H 0.080 0.920 9 C -0.118 4.118 10 C 0.040 3.960 11 N -0.519 5.519 12 C 0.035 3.965 13 C 0.202 3.798 14 H 0.051 0.949 15 O -0.570 6.570 16 C -0.566 4.566 17 H 0.070 0.930 18 C 0.084 3.916 19 N -0.895 5.895 20 Si 0.870 3.130 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.215 1.215 24 C 0.053 3.947 25 C -0.119 4.119 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.354 0.646 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 12.186 -15.156 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.134 4.134 6 C -0.059 4.059 7 C -0.094 4.094 8 H 0.098 0.902 9 C -0.156 4.156 10 C -0.088 4.088 11 N -0.243 5.243 12 C -0.093 4.093 13 C 0.144 3.856 14 H 0.069 0.931 15 O -0.375 6.375 16 C -0.604 4.604 17 H 0.089 0.911 18 C -0.120 4.120 19 N -0.532 5.532 20 Si 0.696 3.304 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.137 1.137 24 C -0.075 4.075 25 C -0.137 4.137 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.199 0.801 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.225 12.865 -14.661 22.504 hybrid contribution -0.341 -0.485 0.330 0.679 sum -11.565 12.380 -14.330 22.189 Atomic orbital electron populations 1.20777 0.91416 1.02511 1.02284 1.19868 0.95888 0.93189 0.99925 1.20979 0.94323 0.97291 1.02162 1.21118 0.94216 0.97990 0.99970 1.21072 1.00337 0.91772 1.00199 1.19728 0.93265 0.94579 0.98359 1.21471 0.96706 0.94477 0.96777 0.90177 1.22828 0.95636 1.00512 0.96581 1.23089 0.98537 0.97144 0.90046 1.63658 1.32003 1.27199 1.01446 1.23006 0.99823 0.89709 0.96765 1.19724 0.86276 0.90131 0.89497 0.93114 1.86662 1.20206 1.44882 1.85787 1.21535 1.50864 0.93424 0.94562 0.91148 1.24978 0.92716 0.97263 0.97072 1.69960 1.46330 1.29190 1.07698 0.87042 0.77520 0.86769 0.79056 1.21519 1.22260 1.13690 1.22933 0.88277 1.00908 0.95373 1.20946 0.93556 0.97505 1.01722 0.91232 0.91743 0.91671 0.86465 0.86173 0.85609 0.91201 0.90512 0.90520 0.94020 0.94923 0.91288 0.80068 0.92617 0.90460 0.92275 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.13 -1.36 9.70 -39.58 -0.38 -1.74 16 4 C -0.11 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.12 -1.42 8.11 -39.58 -0.32 -1.74 16 6 C -0.06 -0.74 4.93 -104.62 -0.52 -1.26 16 7 C -0.07 -0.98 3.15 -89.95 -0.28 -1.26 16 8 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 9 C -0.12 -1.41 6.48 -24.48 -0.16 -1.56 16 10 C 0.04 0.55 6.72 -2.18 -0.01 0.54 16 11 N -0.52 -8.95 5.08 -231.12 -1.18 -10.12 16 12 C 0.03 0.69 4.12 -3.82 -0.02 0.68 16 13 C 0.20 4.78 2.24 -27.88 -0.06 4.71 16 14 H 0.05 1.26 6.26 -51.93 -0.33 0.93 16 15 O -0.57 -13.34 10.04 -35.23 -0.35 -13.69 16 16 C -0.57 -15.86 9.34 -34.44 -0.32 -16.18 16 17 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 18 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 19 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 20 Si 0.87 22.23 26.99 -169.99 -4.59 17.65 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 23 H -0.21 -5.40 5.31 56.52 0.30 -5.10 16 24 C 0.05 0.86 5.64 -2.84 -0.02 0.85 16 25 C -0.12 -1.39 9.34 -39.58 -0.37 -1.76 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.54 7.31 -52.49 -0.38 1.15 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.91 6.94 -51.93 -0.36 0.54 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 36 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.07 1.36 8.12 -51.93 -0.42 0.93 16 38 H 0.35 7.42 9.04 45.56 0.41 7.83 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.08 1.32 6.92 -51.93 -0.36 0.96 16 41 H 0.06 1.05 6.73 -51.93 -0.35 0.70 16 42 H 0.12 1.23 7.98 -52.49 -0.42 0.81 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -31.58 332.91 -9.59 -41.17 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.05 Total: 6.92 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -3.21 Total: -20.15 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.40 Total: -36.91 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.35 Total: -13.69 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.59 Total: 17.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.58 -9.59 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333314356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.236 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds