Wall clock time and date at job start Mon Mar 30 2020 02:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00279 * 2 1 4 4 C 1.38218 * 120.00156 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99610 * 0.04745 * 4 3 2 6 6 C 1.38217 * 120.00325 * 359.90497 * 5 4 3 7 7 C 1.50700 * 119.99769 * 180.34399 * 6 5 4 8 8 H 1.09005 * 110.62492 * 180.42260 * 7 6 5 9 9 C 1.55136 * 110.71010 * 303.53133 * 7 6 5 10 10 C 1.55114 * 101.55969 * 153.90905 * 9 7 6 11 11 N 1.47848 * 104.90156 * 323.15908 * 10 9 7 12 12 C 1.46899 * 110.99614 * 146.24225 * 11 10 9 13 13 C 1.53002 * 109.46851 * 173.32062 * 12 11 10 14 14 H 1.09006 * 109.46878 * 58.42162 * 13 12 11 15 15 O 1.42895 * 109.47788 * 298.42043 * 13 12 11 16 16 C 1.50707 * 109.46901 * 178.41709 * 13 12 11 17 17 H 1.07999 * 120.00053 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99747 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00018 * 180.02562 * 18 16 13 20 20 Si 1.86800 * 120.00162 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.46970 * 90.00559 * 20 18 16 22 22 H 1.48504 * 109.47486 * 210.00269 * 20 18 16 23 23 H 1.48497 * 109.47229 * 330.00688 * 20 18 16 24 24 C 1.47439 * 108.57103 * 23.97506 * 11 10 9 25 25 C 1.38213 * 119.99544 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47383 * 270.02716 * 1 2 3 27 27 H 1.09002 * 109.46719 * 30.01867 * 1 2 3 28 28 H 1.08996 * 109.47511 * 150.02324 * 1 2 3 29 29 H 1.07994 * 120.00106 * 359.97438 * 3 2 1 30 30 H 1.07992 * 120.00114 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.99937 * 179.97438 * 5 4 3 32 32 H 1.09001 * 110.99312 * 272.13124 * 9 7 6 33 33 H 1.09002 * 110.98975 * 35.94221 * 9 7 6 34 34 H 1.08994 * 110.42391 * 204.24169 * 10 9 7 35 35 H 1.08996 * 110.21694 * 81.97185 * 10 9 7 36 36 H 1.08999 * 109.47322 * 293.32299 * 12 11 10 37 37 H 1.08999 * 109.47314 * 53.32806 * 12 11 10 38 38 H 0.96705 * 113.99208 * 300.00156 * 15 13 12 39 39 H 0.97005 * 120.00530 * 179.97438 * 19 18 16 40 40 H 1.09007 * 109.88852 * 239.60501 * 24 11 10 41 41 H 1.08993 * 110.02471 * 118.48988 * 24 11 10 42 42 H 1.08002 * 120.00512 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0001 6 6 3.5805 -1.1971 0.0011 7 6 4.3340 -2.5022 0.0084 8 1 3.6426 -3.3448 0.0007 9 6 5.3075 -2.5804 -1.1969 10 6 6.3893 -3.5539 -0.6601 11 7 6.5268 -3.2168 0.7728 12 6 6.8285 -4.4141 1.5686 13 6 7.1272 -4.0049 3.0124 14 1 6.2692 -3.4733 3.4242 15 8 8.2733 -3.1520 3.0384 16 6 7.3985 -5.2364 3.8376 17 1 7.3612 -6.2132 3.3784 18 6 7.6934 -5.1160 5.1791 19 7 7.9307 -6.1906 5.8992 20 14 7.7572 -3.4266 5.9735 21 1 6.4115 -3.0723 6.4920 22 1 8.7309 -3.4431 7.0946 23 1 8.1798 -2.4213 4.9656 24 6 5.2767 -2.5811 1.2277 25 6 2.1979 -1.1970 0.0005 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5134 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 5.3517 -0.0002 0.0001 32 1 4.8095 -2.9915 -2.0751 33 1 5.7375 -1.6029 -1.4157 34 1 7.3344 -3.3961 -1.1795 35 1 6.0587 -4.5859 -0.7772 36 1 5.9713 -5.0871 1.5517 37 1 7.6968 -4.9209 1.1477 38 1 9.0757 -3.5607 2.6858 39 1 8.1385 -6.1060 6.8429 40 1 5.4850 -1.5783 1.6009 41 1 4.8174 -3.1810 2.0133 42 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333314356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:37 Heat of formation + Delta-G solvation = -48.849263 kcal Electronic energy + Delta-G solvation = -21193.329784 eV Core-core repulsion = 18136.737752 eV Total energy + Delta-G solvation = -3056.592032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97729 -39.51093 -37.64340 -34.50699 -34.39029 -33.03347 -31.67948 -29.64174 -29.31661 -27.65015 -26.33770 -23.78325 -23.00786 -22.39276 -21.64926 -20.32604 -19.38953 -17.76569 -17.07632 -16.87748 -16.41548 -16.33088 -15.98265 -15.64314 -15.16351 -14.93096 -14.62682 -14.33841 -14.02469 -13.95423 -13.82292 -13.69458 -13.25407 -13.20833 -12.98319 -12.91112 -12.64861 -12.45546 -12.18010 -12.04343 -12.03372 -11.76346 -11.59428 -11.51278 -11.06385 -10.82458 -10.11764 -9.68104 -9.42588 -9.14236 -8.37472 -6.51839 0.45216 0.50912 1.37336 1.42848 1.74252 2.42640 2.82545 3.00560 3.08167 3.59289 3.74424 3.82993 4.03351 4.07823 4.12279 4.24466 4.30617 4.33399 4.38667 4.46030 4.51312 4.59038 4.61821 4.70786 4.83928 4.86591 4.92694 4.96429 5.01871 5.03454 5.09166 5.18821 5.27891 5.33354 5.43419 5.48073 5.61016 5.71430 5.76556 6.05318 6.12278 6.15185 6.19466 6.60662 7.21742 7.37408 8.76764 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.004305 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.485839 B = 6502.208301 C = 7036.976774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.121 4.121 5 C -0.130 4.130 6 C -0.072 4.072 7 C -0.066 4.066 8 H 0.083 0.917 9 C -0.106 4.106 10 C 0.037 3.963 11 N -0.528 5.528 12 C 0.049 3.951 13 C 0.210 3.790 14 H 0.042 0.958 15 O -0.573 6.573 16 C -0.567 4.567 17 H 0.037 0.963 18 C 0.031 3.969 19 N -0.939 5.939 20 Si 0.935 3.065 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.207 1.207 24 C 0.053 3.947 25 C -0.132 4.132 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.366 0.634 39 H 0.267 0.733 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 14.311 -16.586 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.139 4.139 5 C -0.148 4.148 6 C -0.073 4.073 7 C -0.085 4.085 8 H 0.102 0.898 9 C -0.144 4.144 10 C -0.090 4.090 11 N -0.252 5.252 12 C -0.079 4.079 13 C 0.152 3.848 14 H 0.060 0.940 15 O -0.379 6.379 16 C -0.605 4.605 17 H 0.056 0.944 18 C -0.169 4.169 19 N -0.578 5.578 20 Si 0.760 3.240 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.129 1.129 24 C -0.075 4.075 25 C -0.150 4.150 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.213 0.787 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.245 14.992 -16.117 25.188 hybrid contribution -0.041 -1.168 0.731 1.379 sum -12.286 13.824 -15.386 24.057 Atomic orbital electron populations 1.20823 0.89544 1.03634 1.02866 1.20226 0.97396 0.92908 0.98949 1.21319 0.94309 0.98272 1.01261 1.21388 0.94782 0.98287 0.99407 1.21134 1.00247 0.92337 1.01128 1.19720 0.93738 0.94248 0.99566 1.21356 0.96358 0.95213 0.95594 0.89847 1.22791 0.94646 1.00248 0.96727 1.23188 0.99939 0.97922 0.87931 1.63584 1.32886 1.25697 1.02984 1.22657 0.99634 0.90608 0.95018 1.19492 0.86046 0.88065 0.91205 0.93999 1.86593 1.20648 1.44601 1.86092 1.21859 1.49804 0.93841 0.95039 0.94426 1.25805 0.92614 1.00622 0.97829 1.70074 1.48186 1.31316 1.08211 0.86032 0.77386 0.82516 0.78097 1.21387 1.22095 1.12854 1.22881 0.88612 0.99663 0.96382 1.21145 0.93391 0.98488 1.02018 0.90804 0.90258 0.91001 0.84193 0.84411 0.86127 0.88959 0.90166 0.89450 0.93719 0.95704 0.91103 0.78724 0.92394 0.91419 0.94401 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.79 16 2 C -0.09 -1.83 5.88 -19.87 -0.12 -1.94 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 4 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 5 C -0.13 -3.04 8.11 22.27 0.18 -2.86 16 6 C -0.07 -1.73 4.93 -19.86 -0.10 -1.83 16 7 C -0.07 -1.64 3.15 -10.36 -0.03 -1.68 16 8 H 0.08 2.01 7.95 -2.38 -0.02 1.99 16 9 C -0.11 -2.32 6.48 32.05 0.21 -2.11 16 10 C 0.04 0.98 6.72 86.85 0.58 1.56 16 11 N -0.53 -17.73 5.08 -885.12 -4.50 -22.23 16 12 C 0.05 1.95 4.12 86.30 0.36 2.31 16 13 C 0.21 9.95 2.24 29.85 0.07 10.01 16 14 H 0.04 2.08 6.26 -2.38 -0.01 2.07 16 15 O -0.57 -26.13 10.04 -148.98 -1.50 -27.63 16 16 C -0.57 -32.37 9.34 25.60 0.24 -32.13 16 17 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 18 C 0.03 1.83 5.47 84.66 0.46 2.29 16 19 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 20 Si 0.94 46.32 26.99 68.60 1.85 48.17 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.21 -9.88 5.31 99.48 0.53 -9.36 16 24 C 0.05 1.70 5.64 86.65 0.49 2.18 16 25 C -0.13 -2.90 9.34 22.27 0.21 -2.69 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.12 2.85 7.31 -2.91 -0.02 2.83 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.72 6.94 -2.39 -0.02 1.70 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.15 7.81 -2.39 -0.02 1.13 16 36 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.07 2.76 8.12 -2.39 -0.02 2.74 16 38 H 0.37 14.89 9.04 -74.05 -0.67 14.22 16 39 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 40 H 0.07 2.30 6.92 -2.38 -0.02 2.28 16 41 H 0.04 1.36 6.73 -2.39 -0.02 1.34 16 42 H 0.13 2.45 7.98 -2.91 -0.02 2.43 16 Total: -1.00 -67.57 332.91 0.00 -67.56 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.15 Total: 24.91 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.70 Total: -32.13 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -4.20 Total: -80.88 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.50 Total: -27.63 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.85 Total: 48.17 kcal Total: -67.57 0.00 -67.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333314356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.713 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds