Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 120.00201 * 2 1 4 4 C 1.38229 * 120.00082 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00262 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00066 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47531 * 359.97438 * 6 5 4 8 8 C 1.53010 * 109.46943 * 239.99483 * 6 5 4 9 9 C 1.53001 * 109.47152 * 119.99958 * 6 5 4 10 10 N 1.46903 * 109.47069 * 184.99916 * 9 6 5 11 11 C 1.47957 * 111.00079 * 169.99783 * 10 9 6 12 12 C 1.53937 * 86.18208 * 222.41605 * 11 10 9 13 13 O 1.42896 * 113.73148 * 269.25755 * 12 11 10 14 14 C 1.50694 * 113.73443 * 138.07827 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47958 * 111.00224 * 70.63461 * 10 9 6 23 23 C 1.38244 * 119.99655 * 0.24822 * 5 4 3 24 24 C 1.38230 * 119.99675 * 359.49568 * 23 5 4 25 25 H 1.09000 * 109.47491 * 90.00008 * 1 2 3 26 26 H 1.09003 * 109.46766 * 210.00031 * 1 2 3 27 27 H 1.09005 * 109.46668 * 329.99823 * 1 2 3 28 28 H 1.07998 * 119.99591 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00145 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.46860 * 300.00231 * 8 6 5 31 31 H 1.08997 * 109.46779 * 59.99849 * 8 6 5 32 32 H 1.09000 * 109.47138 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47366 * 64.99783 * 9 6 5 34 34 H 1.08999 * 109.46999 * 304.99072 * 9 6 5 35 35 H 1.08999 * 113.76060 * 108.09601 * 11 10 9 36 36 H 1.09001 * 113.85944 * 336.74419 * 11 10 9 37 37 H 0.96709 * 114.00030 * 178.09403 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.09003 * 113.76031 * 23.26533 * 22 10 9 40 40 H 1.08999 * 113.76380 * 251.90073 * 22 10 9 41 41 H 1.07998 * 119.99613 * 179.73478 * 23 5 4 42 42 H 1.08004 * 119.99950 * 180.22566 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1421 1.0276 -0.0031 8 6 6.2877 -0.7209 -1.2528 9 6 6.2897 -0.7218 1.2458 10 7 7.7538 -0.6182 1.3065 11 6 8.2652 -1.0919 2.6116 12 6 9.2061 0.1257 2.5686 13 8 10.4671 -0.1434 1.9526 14 6 9.3381 0.8371 3.8905 15 1 8.7973 0.4779 4.7535 16 6 10.1494 1.9468 3.9981 17 7 10.8084 2.3840 2.9473 18 14 10.3124 2.8291 5.6365 19 1 11.2368 3.9819 5.4881 20 1 8.9787 3.3163 6.0713 21 1 10.8519 1.8903 6.6528 22 6 8.1749 0.7649 1.6212 23 6 3.5805 -1.1972 -0.0073 24 6 2.1982 -1.1972 -0.0014 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1324 0.0004 29 1 4.1206 2.1324 -0.0010 30 1 5.9244 -1.7485 -1.2528 31 1 5.9237 -0.2067 -2.1422 32 1 7.3777 -0.7205 -1.2539 33 1 6.0013 -1.7720 1.2019 34 1 5.8559 -0.2626 2.1340 35 1 8.7834 -2.0494 2.5588 36 1 7.5296 -1.0503 3.4148 37 1 11.0501 0.6262 1.8974 38 1 11.3789 3.1649 3.0230 39 1 7.4116 1.3506 2.1335 40 1 8.6209 1.2910 0.7771 41 1 4.1205 -2.1325 -0.0125 42 1 1.6582 -2.1325 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335313020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = -6.322634 kcal Electronic energy + Delta-G solvation = -21169.764201 eV Core-core repulsion = 18115.016262 eV Total energy + Delta-G solvation = -3054.747939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.76481 -38.81438 -35.56520 -33.77441 -32.04203 -31.36510 -30.85252 -28.03494 -26.64409 -25.64449 -25.06513 -23.06900 -22.70139 -21.24546 -19.56075 -18.52902 -17.20913 -16.30529 -15.47399 -15.17327 -15.05270 -14.73574 -14.35693 -14.04102 -13.87220 -13.63098 -13.40640 -13.14246 -12.89840 -12.37641 -12.23413 -12.03256 -11.86509 -11.72768 -11.52553 -11.25559 -11.16195 -10.93605 -10.87371 -10.70781 -10.48811 -10.38050 -10.09251 -9.95733 -9.26142 -8.88296 -8.62085 -8.40749 -8.16792 -7.75647 -6.24395 -4.34095 1.37703 1.44401 3.21753 3.27037 3.29696 3.77939 4.26667 4.67936 4.78319 4.84724 4.98456 5.04321 5.10370 5.16160 5.34556 5.42711 5.50194 5.53670 5.62551 5.69278 5.75940 5.93134 5.96330 6.02606 6.07727 6.15063 6.21801 6.28351 6.30991 6.41743 6.45227 6.52841 6.59088 6.62820 6.74511 6.82800 7.05817 7.06551 7.24354 7.39418 7.78271 8.01637 8.05287 8.67192 9.35759 9.68124 10.81248 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.003958 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.469497 B = 7072.357958 C = 7665.898795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.070 4.070 6 C -0.049 4.049 7 H 0.078 0.922 8 C -0.131 4.131 9 C 0.031 3.969 10 N -0.476 5.476 11 C 0.008 3.992 12 C 0.245 3.755 13 O -0.572 6.572 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.013 4.013 23 C -0.110 4.110 24 C -0.121 4.121 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.388 0.612 38 H 0.271 0.729 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 -3.182 -6.368 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.070 4.070 6 C -0.067 4.067 7 H 0.096 0.904 8 C -0.189 4.189 9 C -0.098 4.098 10 N -0.198 5.198 11 C -0.121 4.121 12 C 0.204 3.796 13 O -0.384 6.384 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.730 3.270 19 H -0.210 1.210 20 H -0.201 1.201 21 H -0.200 1.200 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.139 4.139 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.243 0.757 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.139 0.861 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.758 -3.952 -7.089 17.725 hybrid contribution -0.202 1.543 1.643 2.263 sum -15.960 -2.408 -5.446 17.034 Atomic orbital electron populations 1.20756 0.91552 1.02513 1.01994 1.19863 0.95812 0.93330 1.01009 1.20982 0.94160 0.97345 1.01309 1.21115 0.94056 0.97797 1.00212 1.20005 0.95799 0.93026 0.98217 1.20122 0.89348 1.01052 0.96219 0.90391 1.21703 1.02533 0.99203 0.95413 1.22627 0.91841 0.99544 0.95791 1.68529 1.08078 1.12659 1.30540 1.24124 0.97527 1.00537 0.89906 1.19725 0.81695 0.88756 0.89453 1.86037 1.28368 1.41641 1.82337 1.21641 1.28043 1.11709 0.96253 0.91814 1.25045 0.94515 0.96402 0.97079 1.69341 1.29754 1.25597 1.29184 0.86486 0.78123 0.78972 0.83453 1.21007 1.20104 1.19965 1.24671 0.99678 0.90059 0.99833 1.21011 0.93860 0.97893 1.00072 1.20982 0.94190 0.97296 1.01421 0.91490 0.91776 0.91772 0.86394 0.86101 0.93189 0.93692 0.90790 0.91694 0.94771 0.90790 0.91913 0.75684 0.91872 0.92445 0.91108 0.86087 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.10 -1.12 5.88 -104.62 -0.62 -1.73 16 3 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 4 C -0.11 -1.50 9.67 -39.58 -0.38 -1.88 16 5 C -0.07 -0.98 4.78 -104.62 -0.50 -1.48 16 6 C -0.05 -0.75 2.57 -91.77 -0.24 -0.98 16 7 H 0.08 1.29 7.15 -51.93 -0.37 0.91 16 8 C -0.13 -1.90 8.89 37.16 0.33 -1.57 16 9 C 0.03 0.54 3.95 -3.82 -0.02 0.52 16 10 N -0.48 -9.84 5.72 -238.24 -1.36 -11.21 16 11 C 0.01 0.17 7.36 -2.77 -0.02 0.15 16 12 C 0.25 6.24 1.44 -90.84 -0.13 6.11 16 13 O -0.57 -15.56 13.48 -35.23 -0.47 -16.04 16 14 C -0.54 -14.49 8.62 -34.44 -0.30 -14.79 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.07 1.89 5.40 -17.82 -0.10 1.80 16 17 N -0.90 -24.15 11.09 55.43 0.61 -23.53 16 18 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.01 -0.31 6.43 -2.77 -0.02 -0.32 16 23 C -0.11 -1.41 8.76 -39.58 -0.35 -1.76 16 24 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.50 7.95 -52.49 -0.42 1.08 16 30 H 0.05 0.67 7.37 -51.93 -0.38 0.29 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.20 7.75 -51.93 -0.40 0.80 16 33 H 0.06 1.05 7.59 -51.93 -0.39 0.66 16 34 H 0.03 0.62 7.69 -51.93 -0.40 0.22 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 37 H 0.39 10.72 6.46 45.56 0.29 11.01 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.06 1.33 7.73 -51.93 -0.40 0.92 16 40 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 41 H 0.12 1.44 7.16 -52.49 -0.38 1.06 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -27.86 339.89 -10.03 -37.90 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.17 Total: 12.32 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.74 Total: -20.05 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.75 Total: -34.74 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.47 Total: -16.04 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.86 -10.03 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335313020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.573 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds