Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 120.00201 * 2 1 4 4 C 1.38229 * 120.00082 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00262 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00066 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47531 * 359.97438 * 6 5 4 8 8 C 1.53010 * 109.46943 * 239.99483 * 6 5 4 9 9 C 1.53001 * 109.47152 * 119.99958 * 6 5 4 10 10 N 1.46903 * 109.47069 * 184.99916 * 9 6 5 11 11 C 1.47957 * 111.00079 * 169.99783 * 10 9 6 12 12 C 1.53937 * 86.18208 * 222.41605 * 11 10 9 13 13 O 1.42896 * 113.73148 * 269.25755 * 12 11 10 14 14 C 1.50694 * 113.73443 * 138.07827 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47958 * 111.00224 * 70.63461 * 10 9 6 23 23 C 1.38244 * 119.99655 * 0.24822 * 5 4 3 24 24 C 1.38230 * 119.99675 * 359.49568 * 23 5 4 25 25 H 1.09000 * 109.47491 * 90.00008 * 1 2 3 26 26 H 1.09003 * 109.46766 * 210.00031 * 1 2 3 27 27 H 1.09005 * 109.46668 * 329.99823 * 1 2 3 28 28 H 1.07998 * 119.99591 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00145 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.46860 * 300.00231 * 8 6 5 31 31 H 1.08997 * 109.46779 * 59.99849 * 8 6 5 32 32 H 1.09000 * 109.47138 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47366 * 64.99783 * 9 6 5 34 34 H 1.08999 * 109.46999 * 304.99072 * 9 6 5 35 35 H 1.08999 * 113.76060 * 108.09601 * 11 10 9 36 36 H 1.09001 * 113.85944 * 336.74419 * 11 10 9 37 37 H 0.96709 * 114.00030 * 178.09403 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.09003 * 113.76031 * 23.26533 * 22 10 9 40 40 H 1.08999 * 113.76380 * 251.90073 * 22 10 9 41 41 H 1.07998 * 119.99613 * 179.73478 * 23 5 4 42 42 H 1.08004 * 119.99950 * 180.22566 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1421 1.0276 -0.0031 8 6 6.2877 -0.7209 -1.2528 9 6 6.2897 -0.7218 1.2458 10 7 7.7538 -0.6182 1.3065 11 6 8.2652 -1.0919 2.6116 12 6 9.2061 0.1257 2.5686 13 8 10.4671 -0.1434 1.9526 14 6 9.3381 0.8371 3.8905 15 1 8.7973 0.4779 4.7535 16 6 10.1494 1.9468 3.9981 17 7 10.8084 2.3840 2.9473 18 14 10.3124 2.8291 5.6365 19 1 11.2368 3.9819 5.4881 20 1 8.9787 3.3163 6.0713 21 1 10.8519 1.8903 6.6528 22 6 8.1749 0.7649 1.6212 23 6 3.5805 -1.1972 -0.0073 24 6 2.1982 -1.1972 -0.0014 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1324 0.0004 29 1 4.1206 2.1324 -0.0010 30 1 5.9244 -1.7485 -1.2528 31 1 5.9237 -0.2067 -2.1422 32 1 7.3777 -0.7205 -1.2539 33 1 6.0013 -1.7720 1.2019 34 1 5.8559 -0.2626 2.1340 35 1 8.7834 -2.0494 2.5588 36 1 7.5296 -1.0503 3.4148 37 1 11.0501 0.6262 1.8974 38 1 11.3789 3.1649 3.0230 39 1 7.4116 1.3506 2.1335 40 1 8.6209 1.2910 0.7771 41 1 4.1205 -2.1325 -0.0125 42 1 1.6582 -2.1325 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335313020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = -23.400850 kcal Electronic energy + Delta-G solvation = -21170.504768 eV Core-core repulsion = 18115.016262 eV Total energy + Delta-G solvation = -3055.488506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08994 -40.21907 -36.99538 -35.43159 -34.10396 -32.39336 -31.77331 -29.70869 -27.62115 -27.34201 -26.88805 -24.46269 -23.72324 -22.43489 -20.80105 -20.38539 -19.19109 -17.48712 -17.06581 -16.62311 -16.55566 -15.93727 -15.82264 -15.71880 -15.12042 -14.77657 -14.49334 -14.31963 -14.14529 -13.85960 -13.65413 -13.39916 -13.23312 -12.99236 -12.97469 -12.68497 -12.65152 -12.61030 -12.27766 -12.18192 -11.97319 -11.87635 -11.63993 -11.39138 -11.14204 -10.62791 -10.11821 -9.80888 -9.55774 -9.34736 -8.25032 -6.43121 0.43791 0.51721 1.41567 1.42888 1.51105 2.36380 2.83349 2.95536 3.15067 3.70225 3.85003 4.00853 4.05976 4.11375 4.17550 4.27960 4.29580 4.38399 4.49030 4.50357 4.57338 4.60855 4.76310 4.81167 4.85992 4.87699 4.90637 4.99181 5.04530 5.13512 5.15711 5.24962 5.30273 5.35449 5.42371 5.52995 5.58329 5.72048 5.74680 5.79283 5.98760 6.15598 6.33197 6.61458 7.29726 7.54074 8.79403 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.003958 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.469497 B = 7072.357958 C = 7665.898795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.088 4.088 6 C -0.041 4.041 7 H 0.059 0.941 8 C -0.125 4.125 9 C 0.035 3.965 10 N -0.472 5.472 11 C 0.015 3.985 12 C 0.219 3.781 13 O -0.584 6.584 14 C -0.564 4.564 15 H 0.062 0.938 16 C 0.028 3.972 17 N -0.918 5.918 18 Si 0.966 3.034 19 H -0.279 1.279 20 H -0.271 1.271 21 H -0.272 1.272 22 C 0.001 3.999 23 C -0.118 4.118 24 C -0.125 4.125 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.382 0.618 38 H 0.274 0.726 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.128 0.872 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 -3.571 -6.081 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.088 4.088 6 C -0.060 4.060 7 H 0.077 0.923 8 C -0.182 4.182 9 C -0.094 4.094 10 N -0.195 5.195 11 C -0.114 4.114 12 C 0.178 3.822 13 O -0.395 6.395 14 C -0.602 4.602 15 H 0.080 0.920 16 C -0.172 4.172 17 N -0.559 5.559 18 Si 0.791 3.209 19 H -0.204 1.204 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.143 4.143 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.965 -4.352 -6.811 19.699 hybrid contribution 0.422 1.644 1.519 2.278 sum -17.542 -2.708 -5.292 18.522 Atomic orbital electron populations 1.20815 0.89259 1.03550 1.03061 1.20278 0.97568 0.92899 0.99372 1.21250 0.93630 0.98691 1.00901 1.21241 0.95036 0.97596 1.00924 1.19875 0.94606 0.94005 1.00327 1.19981 0.90817 0.99664 0.95544 0.92274 1.21633 1.00969 1.00085 0.95524 1.22660 0.89331 1.00821 0.96548 1.68458 1.10692 1.10691 1.29614 1.24062 0.96979 0.99371 0.90945 1.20102 0.81609 0.90952 0.89557 1.86020 1.29264 1.41545 1.82669 1.21912 1.28844 1.12557 0.96896 0.91966 1.25801 0.94069 0.96958 1.00364 1.69421 1.29867 1.25823 1.30747 0.85487 0.78223 0.77841 0.79346 1.20404 1.19562 1.19695 1.24372 0.98940 0.91008 0.98522 1.21151 0.94695 0.97597 1.00140 1.21301 0.93792 0.98572 1.00613 0.90283 0.90629 0.90931 0.84553 0.86351 0.91858 0.92595 0.93005 0.89973 0.95582 0.90529 0.90845 0.76390 0.91614 0.92920 0.92723 0.85393 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.10 -1.99 5.88 -19.86 -0.12 -2.11 16 3 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 4 C -0.13 -3.35 9.67 22.27 0.22 -3.14 16 5 C -0.09 -2.37 4.78 -19.86 -0.09 -2.47 16 6 C -0.04 -1.26 2.57 -11.54 -0.03 -1.29 16 7 H 0.06 2.01 7.15 -2.39 -0.02 1.99 16 8 C -0.12 -3.56 8.89 71.99 0.64 -2.92 16 9 C 0.03 1.20 3.95 86.30 0.34 1.54 16 10 N -0.47 -19.64 5.72 -910.87 -5.21 -24.84 16 11 C 0.02 0.67 7.36 86.41 0.64 1.30 16 12 C 0.22 11.32 1.44 -10.89 -0.02 11.31 16 13 O -0.58 -32.52 13.48 -148.98 -2.01 -34.53 16 14 C -0.56 -30.67 8.62 25.60 0.22 -30.45 16 15 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 16 C 0.03 1.49 5.40 84.66 0.46 1.94 16 17 N -0.92 -49.95 11.09 21.45 0.24 -49.71 16 18 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.00 0.05 6.43 86.41 0.56 0.61 16 23 C -0.12 -2.80 8.76 22.27 0.20 -2.61 16 24 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 28 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.12 2.98 7.95 -2.91 -0.02 2.96 16 30 H 0.06 1.61 7.37 -2.39 -0.02 1.59 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 33 H 0.08 2.53 7.59 -2.39 -0.02 2.52 16 34 H 0.03 0.94 7.69 -2.39 -0.02 0.92 16 35 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.07 3.06 7.75 -2.39 -0.02 3.04 16 37 H 0.38 21.77 6.46 -74.05 -0.48 21.29 16 38 H 0.27 14.09 8.31 -92.71 -0.77 13.31 16 39 H 0.05 2.50 7.73 -2.39 -0.02 2.48 16 40 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.13 2.77 7.16 -2.91 -0.02 2.75 16 42 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -59.23 339.89 -0.29 -59.52 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.52 Total: 39.47 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 4.15 Total: -33.89 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -4.97 Total: -74.56 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.01 Total: -34.53 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -59.23 -0.29 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335313020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.115 kcal (2) G-P(sol) polarization free energy of solvation -59.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds