Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99892 * 2 1 4 4 C 1.38231 * 119.99954 * 179.97438 * 3 2 1 5 5 C 1.38238 * 120.00029 * 359.97231 * 4 3 2 6 6 C 1.50703 * 120.00029 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46766 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.46953 * 120.00205 * 6 5 4 9 9 C 1.53001 * 109.47094 * 240.00396 * 6 5 4 10 10 N 1.46895 * 109.46962 * 175.00016 * 9 6 5 11 11 C 1.47961 * 111.00270 * 189.99915 * 10 9 6 12 12 C 1.53934 * 86.18427 * 222.41862 * 11 10 9 13 13 O 1.42895 * 113.73076 * 269.25870 * 12 11 10 14 14 C 1.50696 * 113.73266 * 138.07361 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47958 * 110.99863 * 90.64036 * 10 9 6 23 23 C 1.38234 * 119.99985 * 0.28188 * 5 4 3 24 24 C 1.38231 * 120.00083 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47395 * 90.00071 * 1 2 3 26 26 H 1.08999 * 109.47374 * 209.99974 * 1 2 3 27 27 H 1.09000 * 109.47332 * 330.00044 * 1 2 3 28 28 H 1.08003 * 119.99665 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00103 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47231 * 299.99924 * 8 6 5 31 31 H 1.08995 * 109.46784 * 60.00202 * 8 6 5 32 32 H 1.09001 * 109.46882 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.46867 * 54.99878 * 9 6 5 34 34 H 1.08996 * 109.46976 * 295.00105 * 9 6 5 35 35 H 1.08996 * 113.76309 * 108.09300 * 11 10 9 36 36 H 1.09009 * 113.75512 * 336.73575 * 11 10 9 37 37 H 0.96697 * 114.00066 * 178.10080 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.08993 * 113.76569 * 23.26601 * 22 10 9 40 40 H 1.09005 * 113.75789 * 251.89882 * 22 10 9 41 41 H 1.07998 * 120.00520 * 179.72402 * 23 5 4 42 42 H 1.07998 * 120.00138 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1419 1.0277 0.0031 8 6 6.2877 -0.7206 1.2528 9 6 6.2897 -0.7217 -1.2457 10 7 7.7537 -0.6180 -1.3065 11 6 8.2652 -1.0918 -2.6115 12 6 9.3736 -1.7936 -1.8062 13 8 10.5411 -0.9921 -1.6154 14 6 9.6889 -3.1845 -2.2930 15 1 9.1526 -3.5965 -3.1351 16 6 10.6629 -3.9307 -1.6640 17 7 10.9385 -5.1444 -2.0891 18 14 11.5910 -3.2178 -0.2081 19 1 12.8004 -2.5052 -0.6927 20 1 10.7140 -2.2658 0.5200 21 1 11.9964 -4.3156 0.7061 22 6 8.3951 -1.7600 -0.6182 23 6 3.5805 -1.1971 -0.0037 24 6 2.1981 -1.1971 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1325 0.0010 30 1 5.9237 -0.2064 2.1423 31 1 5.9244 -1.7483 1.2529 32 1 7.3777 -0.7210 1.2534 33 1 5.8557 -0.2626 -2.1339 34 1 6.0013 -1.7719 -1.2019 35 1 8.6300 -0.2926 -3.2567 36 1 7.5919 -1.7794 -3.1236 37 1 11.2284 -1.4183 -1.0853 38 1 11.6240 -5.6692 -1.6468 39 1 7.7601 -2.6430 -0.5473 40 1 8.8639 -1.4946 0.3294 41 1 4.1205 -2.1324 -0.0073 42 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335313021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = 11.846679 kcal Electronic energy + Delta-G solvation = -21265.807676 eV Core-core repulsion = 18211.847618 eV Total energy + Delta-G solvation = -3053.960058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91563 -39.11897 -35.85551 -34.20539 -32.42222 -31.45632 -30.90770 -28.40298 -26.85679 -25.85962 -25.24505 -23.02662 -22.74283 -21.31114 -19.71343 -19.02873 -17.28131 -16.40421 -16.20144 -15.59036 -15.16811 -14.95710 -14.58234 -14.15427 -13.85781 -13.58764 -13.37021 -13.30770 -12.81788 -12.67652 -12.62398 -12.35803 -12.15588 -12.00467 -11.80436 -11.54503 -11.29451 -11.08449 -10.92366 -10.63216 -10.46861 -10.36185 -10.22795 -9.93889 -9.27125 -8.93715 -8.88127 -8.55217 -8.47297 -7.97250 -6.32606 -4.36345 1.32065 1.39157 3.07367 3.13592 3.21876 3.72336 4.13323 4.49689 4.73793 4.76849 4.84392 4.98494 5.00351 5.08851 5.27870 5.30392 5.39990 5.45916 5.50650 5.56270 5.63100 5.70316 5.78259 5.81392 5.96431 5.99015 6.06970 6.10113 6.16555 6.24810 6.33472 6.38903 6.42866 6.54031 6.55710 6.66174 6.75054 6.92248 7.00136 7.03376 7.35638 7.78487 8.15392 8.69500 8.70178 9.27090 10.80124 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.003823 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.671331 B = 7322.141740 C = 7466.367486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.072 4.072 6 C -0.043 4.043 7 H 0.082 0.918 8 C -0.146 4.146 9 C 0.028 3.972 10 N -0.477 5.477 11 C 0.024 3.976 12 C 0.199 3.801 13 O -0.551 6.551 14 C -0.536 4.536 15 H 0.085 0.915 16 C 0.077 3.923 17 N -0.884 5.884 18 Si 0.861 3.139 19 H -0.268 1.268 20 H -0.253 1.253 21 H -0.287 1.287 22 C -0.026 4.026 23 C -0.110 4.110 24 C -0.120 4.120 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.268 0.732 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.423 9.364 6.097 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.072 4.072 6 C -0.062 4.062 7 H 0.101 0.899 8 C -0.203 4.203 9 C -0.101 4.101 10 N -0.199 5.199 11 C -0.105 4.105 12 C 0.159 3.841 13 O -0.362 6.362 14 C -0.574 4.574 15 H 0.103 0.897 16 C -0.127 4.127 17 N -0.520 5.520 18 Si 0.690 3.310 19 H -0.195 1.195 20 H -0.179 1.179 21 H -0.213 1.213 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.198 0.802 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.538 10.274 5.980 20.367 hybrid contribution 0.515 -1.048 0.827 1.431 sum -16.023 9.227 6.807 19.703 Atomic orbital electron populations 1.20762 0.91522 1.02474 1.02115 1.19872 0.95846 0.93320 1.00853 1.20976 0.94166 0.97313 1.01479 1.21074 0.94005 0.97653 1.00468 1.19989 0.95737 0.93018 0.98498 1.20071 0.89253 1.01216 0.95683 0.89942 1.21934 1.02405 0.99743 0.96182 1.22674 0.91535 0.98788 0.97056 1.68442 1.04724 1.38867 1.07914 1.23978 0.95835 0.97993 0.92672 1.20490 0.82857 0.89773 0.91024 1.86466 1.28049 1.46268 1.75380 1.21415 1.21634 0.96741 1.17624 0.89726 1.25016 0.96248 0.94754 0.96714 1.69880 1.31776 1.09638 1.40711 0.87294 0.81206 0.79129 0.83414 1.19469 1.17860 1.21344 1.25101 0.98686 0.91734 1.00037 1.21057 0.93942 0.98014 0.99762 1.21010 0.94204 0.97383 1.01162 0.91394 0.91745 0.91803 0.86416 0.86145 0.93273 0.92938 0.91038 0.91665 0.93858 0.90186 0.90983 0.80154 0.92137 0.90994 0.90866 0.86034 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.10 -1.05 5.88 -104.63 -0.62 -1.66 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 4 C -0.11 -1.35 9.67 -39.58 -0.38 -1.73 16 5 C -0.07 -0.93 4.78 -104.62 -0.50 -1.43 16 6 C -0.04 -0.62 2.77 -91.77 -0.25 -0.87 16 7 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 8 C -0.15 -2.06 8.33 37.16 0.31 -1.75 16 9 C 0.03 0.46 4.14 -3.83 -0.02 0.44 16 10 N -0.48 -9.24 6.04 -238.23 -1.44 -10.68 16 11 C 0.02 0.50 7.34 -2.77 -0.02 0.48 16 12 C 0.20 4.78 1.05 -90.84 -0.10 4.68 16 13 O -0.55 -13.68 13.32 -35.23 -0.47 -14.15 16 14 C -0.54 -14.68 9.20 -34.44 -0.32 -14.99 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.88 -25.87 13.96 55.43 0.77 -25.09 16 18 Si 0.86 20.06 24.34 -169.99 -4.14 15.92 16 19 H -0.27 -6.08 7.06 56.52 0.40 -5.68 16 20 H -0.25 -5.60 5.28 56.52 0.30 -5.30 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.03 -0.56 4.76 -2.76 -0.01 -0.57 16 23 C -0.11 -1.38 8.76 -39.58 -0.35 -1.73 16 24 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.12 1.26 7.95 -52.49 -0.42 0.85 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.72 7.40 -51.93 -0.38 0.34 16 32 H 0.07 1.13 5.64 -51.93 -0.29 0.83 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.04 0.71 6.79 -51.93 -0.35 0.36 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.07 1.45 7.87 -51.92 -0.41 1.04 16 37 H 0.35 8.26 3.31 45.56 0.15 8.41 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.07 1.51 7.43 -51.93 -0.39 1.12 16 40 H 0.07 1.55 5.92 -51.93 -0.31 1.24 16 41 H 0.12 1.50 7.16 -52.49 -0.38 1.13 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -29.47 327.19 -9.32 -38.79 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.22 Total: 11.31 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.76 Total: -21.04 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.66 Total: -35.77 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.47 Total: -14.15 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.14 Total: 15.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.47 -9.32 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335313021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.638 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds