Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99892 * 2 1 4 4 C 1.38231 * 119.99954 * 179.97438 * 3 2 1 5 5 C 1.38238 * 120.00029 * 359.97231 * 4 3 2 6 6 C 1.50703 * 120.00029 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46766 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.46953 * 120.00205 * 6 5 4 9 9 C 1.53001 * 109.47094 * 240.00396 * 6 5 4 10 10 N 1.46895 * 109.46962 * 175.00016 * 9 6 5 11 11 C 1.47961 * 111.00270 * 189.99915 * 10 9 6 12 12 C 1.53934 * 86.18427 * 222.41862 * 11 10 9 13 13 O 1.42895 * 113.73076 * 269.25870 * 12 11 10 14 14 C 1.50696 * 113.73266 * 138.07361 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47958 * 110.99863 * 90.64036 * 10 9 6 23 23 C 1.38234 * 119.99985 * 0.28188 * 5 4 3 24 24 C 1.38231 * 120.00083 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.47395 * 90.00071 * 1 2 3 26 26 H 1.08999 * 109.47374 * 209.99974 * 1 2 3 27 27 H 1.09000 * 109.47332 * 330.00044 * 1 2 3 28 28 H 1.08003 * 119.99665 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00103 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47231 * 299.99924 * 8 6 5 31 31 H 1.08995 * 109.46784 * 60.00202 * 8 6 5 32 32 H 1.09001 * 109.46882 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.46867 * 54.99878 * 9 6 5 34 34 H 1.08996 * 109.46976 * 295.00105 * 9 6 5 35 35 H 1.08996 * 113.76309 * 108.09300 * 11 10 9 36 36 H 1.09009 * 113.75512 * 336.73575 * 11 10 9 37 37 H 0.96697 * 114.00066 * 178.10080 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.08993 * 113.76569 * 23.26601 * 22 10 9 40 40 H 1.09005 * 113.75789 * 251.89882 * 22 10 9 41 41 H 1.07998 * 120.00520 * 179.72402 * 23 5 4 42 42 H 1.07998 * 120.00138 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1419 1.0277 0.0031 8 6 6.2877 -0.7206 1.2528 9 6 6.2897 -0.7217 -1.2457 10 7 7.7537 -0.6180 -1.3065 11 6 8.2652 -1.0918 -2.6115 12 6 9.3736 -1.7936 -1.8062 13 8 10.5411 -0.9921 -1.6154 14 6 9.6889 -3.1845 -2.2930 15 1 9.1526 -3.5965 -3.1351 16 6 10.6629 -3.9307 -1.6640 17 7 10.9385 -5.1444 -2.0891 18 14 11.5910 -3.2178 -0.2081 19 1 12.8004 -2.5052 -0.6927 20 1 10.7140 -2.2658 0.5200 21 1 11.9964 -4.3156 0.7061 22 6 8.3951 -1.7600 -0.6182 23 6 3.5805 -1.1971 -0.0037 24 6 2.1981 -1.1971 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1325 0.0010 30 1 5.9237 -0.2064 2.1423 31 1 5.9244 -1.7483 1.2529 32 1 7.3777 -0.7210 1.2534 33 1 5.8557 -0.2626 -2.1339 34 1 6.0013 -1.7719 -1.2019 35 1 8.6300 -0.2926 -3.2567 36 1 7.5919 -1.7794 -3.1236 37 1 11.2284 -1.4183 -1.0853 38 1 11.6240 -5.6692 -1.6468 39 1 7.7601 -2.6430 -0.5473 40 1 8.8639 -1.4946 0.3294 41 1 4.1205 -2.1324 -0.0073 42 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335313021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = -8.320816 kcal Electronic energy + Delta-G solvation = -21266.682204 eV Core-core repulsion = 18211.847618 eV Total energy + Delta-G solvation = -3054.834586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30281 -40.31000 -37.30350 -35.63982 -34.54254 -32.41370 -31.77013 -30.02545 -27.97469 -27.44110 -26.83378 -24.35218 -23.74336 -22.43548 -20.96317 -20.67582 -19.31166 -18.13710 -17.52509 -16.69872 -16.43079 -16.18392 -15.94548 -15.48360 -15.11077 -14.92482 -14.71647 -14.45776 -14.25572 -14.06214 -14.00932 -13.66554 -13.41529 -13.04743 -12.96002 -12.89811 -12.62089 -12.53795 -12.36226 -12.07947 -11.91864 -11.75598 -11.55671 -11.47696 -11.14531 -10.90666 -10.41001 -9.80517 -9.65430 -9.33616 -8.45332 -6.55171 0.44471 0.52645 1.21442 1.27148 1.36609 2.15852 2.77949 2.82770 3.00285 3.51427 3.80444 3.88340 3.93436 4.07585 4.10479 4.14852 4.18325 4.24490 4.47964 4.50206 4.53763 4.61775 4.69459 4.75976 4.78251 4.85643 4.86861 4.89255 4.99602 5.03126 5.13186 5.17258 5.25584 5.28961 5.33360 5.37356 5.42203 5.57628 5.73144 5.80610 6.02218 6.16361 6.20819 6.49418 6.76725 7.12592 8.70783 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.003823 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.671331 B = 7322.141740 C = 7466.367486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.087 4.087 6 C -0.034 4.034 7 H 0.082 0.918 8 C -0.142 4.142 9 C 0.031 3.969 10 N -0.471 5.471 11 C 0.027 3.973 12 C 0.182 3.818 13 O -0.557 6.557 14 C -0.548 4.548 15 H 0.047 0.953 16 C 0.023 3.977 17 N -0.930 5.930 18 Si 0.922 3.078 19 H -0.254 1.254 20 H -0.234 1.234 21 H -0.283 1.283 22 C -0.012 4.012 23 C -0.124 4.124 24 C -0.129 4.129 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.350 0.650 38 H 0.272 0.728 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 11.243 7.578 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.088 4.088 6 C -0.053 4.053 7 H 0.100 0.900 8 C -0.200 4.200 9 C -0.098 4.098 10 N -0.193 5.193 11 C -0.102 4.102 12 C 0.142 3.858 13 O -0.368 6.368 14 C -0.586 4.586 15 H 0.065 0.935 16 C -0.177 4.177 17 N -0.568 5.568 18 Si 0.746 3.254 19 H -0.180 1.180 20 H -0.158 1.158 21 H -0.209 1.209 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.202 0.798 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.030 12.170 7.455 22.995 hybrid contribution 0.867 -1.656 0.271 1.889 sum -17.163 10.514 7.726 21.559 Atomic orbital electron populations 1.20817 0.89427 1.03579 1.02947 1.20261 0.97484 0.92952 0.99413 1.21294 0.93900 0.98462 1.00677 1.21274 0.94757 0.97636 1.00248 1.19883 0.94820 0.93754 1.00298 1.19940 0.90346 1.00643 0.94383 0.89968 1.21890 1.01217 0.99963 0.96890 1.22710 0.89334 0.99050 0.98689 1.68414 1.06856 1.37633 1.06402 1.23943 0.94920 0.97946 0.93378 1.20658 0.83463 0.88236 0.93474 1.86457 1.28461 1.46200 1.75674 1.21605 1.21540 0.98694 1.16725 0.93497 1.25869 0.97180 0.94918 0.99779 1.70019 1.32889 1.11279 1.42610 0.86281 0.80347 0.78941 0.79783 1.18012 1.15758 1.20910 1.24875 0.97794 0.92375 0.99107 1.21124 0.94737 0.97754 1.00551 1.21254 0.93847 0.98585 1.01039 0.90575 0.90938 0.90494 0.84117 0.85055 0.91908 0.93069 0.92644 0.91038 0.94266 0.89588 0.90767 0.79823 0.91864 0.91307 0.90318 0.86632 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.67 16 2 C -0.10 -1.89 5.88 -19.87 -0.12 -2.00 16 3 C -0.13 -2.36 9.70 22.27 0.22 -2.15 16 4 C -0.12 -2.62 9.67 22.27 0.22 -2.40 16 5 C -0.09 -2.13 4.78 -19.86 -0.09 -2.23 16 6 C -0.03 -0.93 2.77 -11.54 -0.03 -0.96 16 7 H 0.08 2.22 7.88 -2.39 -0.02 2.20 16 8 C -0.14 -3.84 8.33 71.98 0.60 -3.24 16 9 C 0.03 0.97 4.14 86.30 0.36 1.32 16 10 N -0.47 -17.70 6.04 -910.82 -5.50 -23.20 16 11 C 0.03 1.11 7.34 86.41 0.63 1.74 16 12 C 0.18 8.68 1.05 -10.89 -0.01 8.67 16 13 O -0.56 -26.91 13.32 -148.98 -1.98 -28.89 16 14 C -0.55 -30.71 9.20 25.60 0.24 -30.47 16 15 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 16 C 0.02 1.27 5.47 84.66 0.46 1.73 16 17 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 18 Si 0.92 41.01 24.34 68.60 1.67 42.68 16 19 H -0.25 -10.75 7.06 99.48 0.70 -10.05 16 20 H -0.23 -9.57 5.28 99.48 0.52 -9.04 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 C -0.01 -0.51 4.76 86.41 0.41 -0.09 16 23 C -0.12 -2.98 8.76 22.27 0.20 -2.79 16 24 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.07 0.79 8.09 -2.39 -0.02 0.78 16 27 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 28 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.13 2.46 7.95 -2.91 -0.02 2.43 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.37 7.40 -2.39 -0.02 1.35 16 32 H 0.05 1.66 5.64 -2.39 -0.01 1.65 16 33 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.04 1.27 6.79 -2.39 -0.02 1.26 16 35 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.07 3.01 7.87 -2.38 -0.02 2.99 16 37 H 0.35 15.98 3.31 -74.06 -0.25 15.73 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.07 2.87 7.43 -2.39 -0.02 2.86 16 40 H 0.08 3.18 5.92 -2.38 -0.01 3.17 16 41 H 0.12 2.83 7.16 -2.91 -0.02 2.81 16 42 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -63.49 327.19 -0.94 -64.43 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.57 Total: 36.56 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 4.00 Total: -36.03 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -5.20 Total: -78.75 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.98 Total: -28.89 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.67 Total: 42.68 kcal Total: -63.49 -0.94 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335313021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.107 kcal (2) G-P(sol) polarization free energy of solvation -63.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds