Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38172 * 119.83114 * 2 1 4 4 C 1.38123 * 119.99515 * 179.97438 * 3 2 1 5 5 C 1.38648 * 119.87341 * 0.02562 * 4 3 2 6 6 O 1.35899 * 119.95088 * 180.02562 * 5 4 3 7 7 C 1.38943 * 120.09609 * 359.97438 * 5 4 3 8 8 C 1.38163 * 119.81922 * 0.02562 * 7 5 4 9 9 C 1.51374 * 109.75263 * 179.97438 * 8 7 5 10 10 H 1.09001 * 110.38374 * 258.21192 * 9 8 7 11 11 C 1.53001 * 110.30301 * 136.10894 * 9 8 7 12 12 C 1.54342 * 105.17336 * 17.18194 * 9 8 7 13 13 C 1.51362 * 130.39813 * 179.97438 * 7 5 4 14 14 H 1.08996 * 110.30608 * 281.74249 * 13 7 5 15 15 N 1.46897 * 110.30377 * 43.90084 * 13 7 5 16 16 C 1.46903 * 110.99597 * 203.96071 * 15 13 7 17 17 C 1.53002 * 109.46993 * 175.23049 * 16 15 13 18 18 C 1.50704 * 109.47139 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00070 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99727 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00273 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46771 * 59.99791 * 22 20 18 24 24 H 1.48493 * 109.47130 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46781 * 300.00235 * 22 20 18 26 26 H 1.08992 * 109.47063 * 96.70546 * 1 2 3 27 27 H 1.09003 * 109.47067 * 216.70549 * 1 2 3 28 28 H 1.09000 * 109.46993 * 336.70413 * 1 2 3 29 29 H 1.08003 * 120.00455 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.06266 * 180.02562 * 4 3 2 31 31 H 0.96699 * 113.99924 * 269.97552 * 6 5 4 32 32 H 1.08999 * 109.47195 * 319.99163 * 11 9 8 33 33 H 1.09000 * 109.47437 * 79.99673 * 11 9 8 34 34 H 1.09004 * 109.46814 * 199.98889 * 11 9 8 35 35 H 1.09004 * 110.82443 * 91.88901 * 12 9 8 36 36 H 1.09004 * 110.82571 * 215.43339 * 12 9 8 37 37 H 1.00897 * 111.00171 * 327.91399 * 15 13 7 38 38 H 1.08998 * 109.47484 * 295.23160 * 16 15 13 39 39 H 1.09005 * 109.47169 * 55.23539 * 16 15 13 40 40 H 1.09003 * 109.47090 * 299.99863 * 17 16 15 41 41 H 1.08999 * 109.47336 * 59.99855 * 17 16 15 42 42 H 0.96997 * 120.00044 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1986 0.0000 4 6 3.5756 1.2026 0.0005 5 6 4.2696 0.0023 0.0005 6 8 5.6286 0.0044 0.0016 7 6 3.5777 -1.2026 0.0005 8 6 2.1961 -1.2014 0.0000 9 6 1.6833 -2.6257 -0.0005 10 1 1.3587 -2.9120 -1.0009 11 6 0.5301 -2.7751 0.9938 12 6 2.8853 -3.4880 0.4398 13 6 4.0888 -2.6273 0.0000 14 1 4.4120 -2.9129 -1.0010 15 7 5.1957 -2.7721 0.9549 16 6 6.0575 -3.9056 0.5937 17 6 7.2608 -3.9524 1.5376 18 6 8.1453 -5.1149 1.1667 19 1 7.8759 -5.7564 0.3407 20 6 9.2984 -5.3593 1.8819 21 7 9.6262 -4.5785 2.8881 22 14 10.3944 -6.8007 1.4227 23 1 10.8672 -6.6371 0.0245 24 1 11.5623 -6.8460 2.3387 25 1 9.6244 -8.0651 1.5401 26 1 -0.3633 -0.1200 -1.0206 27 1 -0.3633 -0.8239 0.6143 28 1 -0.3633 0.9439 0.4064 29 1 1.6516 2.1324 -0.0004 30 1 4.1139 2.1389 0.0010 31 1 6.0226 0.0050 -0.8815 32 1 0.7518 -2.2047 1.8958 33 1 -0.3890 -2.4002 0.5435 34 1 0.4058 -3.8272 1.2506 35 1 2.8848 -3.6304 1.5205 36 1 2.8848 -4.4469 -0.0784 37 1 5.7297 -1.9187 1.0215 38 1 5.4923 -4.8336 0.6794 39 1 6.4051 -3.7853 -0.4324 40 1 7.8261 -3.0244 1.4518 41 1 6.9133 -4.0727 2.5636 42 1 10.4376 -4.7503 3.3910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342410326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -32.655757 kcal Electronic energy + Delta-G solvation = -21257.413448 eV Core-core repulsion = 18201.523620 eV Total energy + Delta-G solvation = -3055.889828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72379 -37.58751 -36.57893 -34.60199 -33.00779 -32.05042 -30.14312 -29.13091 -27.56108 -26.37907 -24.47093 -23.12024 -22.03355 -20.90431 -20.35790 -19.78244 -17.88242 -16.31514 -16.08317 -15.57306 -15.44086 -15.14994 -14.49890 -14.34878 -14.00885 -13.79937 -13.55715 -13.41552 -12.68336 -12.55894 -12.46102 -12.30629 -12.00752 -11.89335 -11.57086 -11.41786 -11.23556 -10.96707 -10.91415 -10.73054 -10.55117 -10.46820 -10.25553 -9.93912 -9.29905 -9.12874 -8.67215 -8.37454 -8.30210 -7.68613 -5.94991 -3.97771 1.21192 1.29711 3.35801 3.40086 3.42359 3.53000 4.20277 4.42606 4.47955 4.51702 4.82572 4.84119 4.98386 5.03248 5.19988 5.23334 5.37470 5.39892 5.40519 5.49265 5.56548 5.60550 5.74566 5.77435 5.89335 5.93961 6.02637 6.13706 6.23909 6.29446 6.39238 6.42326 6.46753 6.54071 6.60322 6.82623 7.04499 7.57533 7.71511 7.80995 7.90968 8.08891 8.18154 8.49049 9.09441 9.65515 11.16373 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.003857 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.091244 B = 7257.464325 C = 7988.227739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.145 4.145 5 C 0.117 3.883 6 O -0.493 6.493 7 C -0.111 4.111 8 C -0.071 4.071 9 C -0.052 4.052 10 H 0.083 0.917 11 C -0.147 4.147 12 C -0.105 4.105 13 C 0.128 3.872 14 H 0.053 0.947 15 N -0.684 5.684 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.388 0.612 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.351 0.649 38 H 0.057 0.943 39 H 0.013 0.987 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.060 10.238 -8.373 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.163 4.163 5 C 0.072 3.928 6 O -0.302 6.302 7 C -0.112 4.112 8 C -0.071 4.071 9 C -0.070 4.070 10 H 0.101 0.899 11 C -0.204 4.204 12 C -0.143 4.143 13 C 0.018 3.982 14 H 0.071 0.929 15 N -0.318 5.318 16 C -0.062 4.062 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.071 0.929 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.243 0.757 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.333 9.902 -7.165 22.872 hybrid contribution 1.411 -0.273 -1.510 2.084 sum -17.922 9.629 -8.675 22.117 Atomic orbital electron populations 1.21082 0.91475 1.03265 1.02442 1.19394 0.95939 0.91682 1.01344 1.20767 0.93479 0.97246 1.01231 1.21265 0.94510 0.97400 1.03134 1.18101 0.82859 0.91030 1.00825 1.84857 1.15857 1.96211 1.33304 1.21060 0.94596 0.94833 1.00747 1.20281 0.93127 0.94549 0.99191 1.20678 0.96152 0.90451 0.99740 0.89890 1.21973 0.97262 1.02050 0.99128 1.22519 0.91582 0.97230 1.02988 1.20988 0.93434 0.89038 0.94783 0.92940 1.60802 1.13458 1.09544 1.47976 1.22202 0.94590 0.91948 0.97457 1.19074 0.90476 0.96811 0.94919 1.21139 1.06746 1.12694 1.15439 0.92855 1.25005 0.97788 0.96508 0.95055 1.69969 1.25026 1.38180 1.20017 0.86656 0.80058 0.83030 0.78216 1.20328 1.21288 1.20238 0.91546 0.90043 0.91977 0.85743 0.85379 0.75663 0.92143 0.92089 0.92076 0.89392 0.90961 0.82787 0.92493 0.96876 0.96761 0.95710 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.66 36.01 0.35 -0.70 16 2 C -0.08 -0.94 5.86 -104.55 -0.61 -1.55 16 3 C -0.11 -1.19 9.66 -39.65 -0.38 -1.57 16 4 C -0.14 -1.75 9.98 -39.47 -0.39 -2.14 16 5 C 0.12 1.65 6.58 -39.17 -0.26 1.39 16 6 O -0.49 -6.99 11.57 -19.42 -0.22 -7.21 16 7 C -0.11 -1.64 5.74 -104.06 -0.60 -2.24 16 8 C -0.07 -0.91 5.45 -104.22 -0.57 -1.48 16 9 C -0.05 -0.59 3.34 -90.74 -0.30 -0.89 16 10 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.15 -1.41 7.79 37.16 0.29 -1.12 16 12 C -0.11 -1.46 6.20 -25.32 -0.16 -1.61 16 13 C 0.13 2.03 3.16 -67.83 -0.21 1.82 16 14 H 0.05 0.83 7.76 -51.93 -0.40 0.43 16 15 N -0.68 -13.32 6.35 -106.85 -0.68 -14.00 16 16 C 0.07 1.46 5.54 -3.82 -0.02 1.44 16 17 C 0.02 0.67 5.18 -27.88 -0.14 0.52 16 18 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 22 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.64 4.31 -51.93 -0.22 0.42 16 28 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 29 H 0.12 1.03 8.05 -52.48 -0.42 0.61 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.39 3.82 9.06 45.56 0.41 4.24 16 32 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 33 H 0.06 0.47 6.09 -51.93 -0.32 0.15 16 34 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.09 1.35 7.86 -51.93 -0.41 0.94 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.35 7.08 6.26 -39.29 -0.25 6.83 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.01 0.28 7.96 -51.93 -0.41 -0.13 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -32.62 335.19 -9.34 -41.96 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.77 Total: 6.00 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.43 Total: -22.00 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.06 Total: -40.78 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.22 Total: -7.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.62 -9.34 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.300 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds